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Search of human proteins with 219842317
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219842317 glutathione S-transferase kappa 1 isoform b [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219842317 glutathione S-transferase kappa 1 isoform b [Homo s... 574 e-164
gi|7705704 glutathione S-transferase kappa 1 isoform a [Homo sap... 416 e-117
gi|219842335 glutathione S-transferase kappa 1 isoform d [Homo s... 313 1e-85
gi|219842333 glutathione S-transferase kappa 1 isoform c [Homo s... 268 5e-72
gi|40548328 nascent-polypeptide-associated complex alpha polypep... 31 1.1
gi|163965362 nascent polypeptide-associated complex alpha subuni... 31 1.4
gi|163965366 nascent polypeptide-associated complex alpha subuni... 31 1.4
gi|5031931 nascent polypeptide-associated complex alpha subunit ... 31 1.4
gi|163965364 nascent polypeptide-associated complex alpha subuni... 31 1.4
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 30 1.8
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 30 1.8
gi|10863935 reticulon 1 isoform A [Homo sapiens] 30 2.4
gi|31581524 cordon-bleu homolog [Homo sapiens] 29 4.1
gi|18201913 forkhead box N1 [Homo sapiens] 29 4.1
gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens] 29 5.3
gi|91208420 bassoon protein [Homo sapiens] 29 5.3
gi|54860079 nadrin isoform 1 [Homo sapiens] 29 5.3
gi|122937428 phospholipase A2, group 4E [Homo sapiens] 28 6.9
gi|5730031 secretory carrier membrane protein 2 [Homo sapiens] 28 9.0
gi|239757729 PREDICTED: hypothetical protein [Homo sapiens] 28 9.0
gi|239752222 PREDICTED: hypothetical protein [Homo sapiens] 28 9.0
gi|239746743 PREDICTED: hypothetical protein [Homo sapiens] 28 9.0
>gi|219842317 glutathione S-transferase kappa 1 isoform b [Homo
sapiens]
Length = 282
Score = 574 bits (1479), Expect = e-164
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 121 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF 180
LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF
Sbjct: 121 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF 180
Query: 181 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 240
SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP
Sbjct: 181 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 240
Query: 241 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 282
ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
Sbjct: 241 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 282
>gi|7705704 glutathione S-transferase kappa 1 isoform a [Homo
sapiens]
Length = 226
Score = 416 bits (1070), Expect = e-117
Identities = 218/282 (77%), Positives = 223/282 (79%), Gaps = 56/282 (19%)
Query: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 121 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF 180
LWMRVWSR ++ +T P+ +
Sbjct: 121 LWMRVWSR-------------NEDITEPQSI----------------------------- 138
Query: 181 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 240
LAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP
Sbjct: 139 --------------LAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 184
Query: 241 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 282
ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
Sbjct: 185 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 226
>gi|219842335 glutathione S-transferase kappa 1 isoform d [Homo
sapiens]
Length = 183
Score = 313 bits (801), Expect = 1e-85
Identities = 181/282 (64%), Positives = 182/282 (64%), Gaps = 99/282 (35%)
Query: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDS
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDS--------- 51
Query: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
GSLSAMRFLTAVNLEHPEMLEKASRE
Sbjct: 52 ----------------------------------GSLSAMRFLTAVNLEHPEMLEKASRE 77
Query: 121 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF 180
L W RV W
Sbjct: 78 L----WMRV----W---------------------------------------------- 83
Query: 181 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 240
S+NEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP
Sbjct: 84 --SRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP 141
Query: 241 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 282
ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
Sbjct: 142 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL 183
>gi|219842333 glutathione S-transferase kappa 1 isoform c [Homo
sapiens]
Length = 214
Score = 268 bits (684), Expect = 5e-72
Identities = 128/130 (98%), Positives = 129/130 (99%)
Query: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
Sbjct: 1 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP 60
Query: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
Sbjct: 61 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE 120
Query: 121 LWMRVWSRVS 130
LWMRVWSR +
Sbjct: 121 LWMRVWSRAA 130
Score = 175 bits (443), Expect = 5e-44
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 197 AAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGS 256
AAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGS
Sbjct: 129 AAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGS 188
Query: 257 DRMELLAHLLGEKWMGPIPPAVNARL 282
DRMELLAHLLGEKWMGPIPPAVNARL
Sbjct: 189 DRMELLAHLLGEKWMGPIPPAVNARL 214
>gi|40548328 nascent-polypeptide-associated complex alpha
polypeptide-like [Homo sapiens]
Length = 215
Score = 31.2 bits (69), Expect = 1.1
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 168 VTPLSPHRLPA-----VFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKN 222
+T L ++ PA VF ++ +D+++ Q+ LAAAEK + E + E TP V+
Sbjct: 106 ITKLDVYKSPASDAYIVFGEAKIQDLSQ-QAQLAAAEKFRVQGEAVGNIQENTQTPTVQE 164
Query: 223 QLKE 226
+ +E
Sbjct: 165 ESEE 168
>gi|163965362 nascent polypeptide-associated complex alpha subunit
isoform b [Homo sapiens]
Length = 215
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 179 VFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKE 226
VF ++ ED+++ Q+ LAAAEK + E + E TP V+ + +E
Sbjct: 122 VFGEAKIEDLSQ-QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEE 168
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 179 VFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKE 226
VF ++ ED+++ Q+ LAAAEK + E + E TP V+ + +E
Sbjct: 1985 VFGEAKIEDLSQ-QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEE 2031
>gi|5031931 nascent polypeptide-associated complex alpha subunit
isoform b [Homo sapiens]
Length = 215
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 179 VFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKE 226
VF ++ ED+++ Q+ LAAAEK + E + E TP V+ + +E
Sbjct: 122 VFGEAKIEDLSQ-QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEE 168
>gi|163965364 nascent polypeptide-associated complex alpha subunit
isoform b [Homo sapiens]
Length = 215
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 179 VFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKE 226
VF ++ ED+++ Q+ LAAAEK + E + E TP V+ + +E
Sbjct: 122 VFGEAKIEDLSQ-QAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEE 168
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 30.4 bits (67), Expect = 1.8
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 159 PPGGSTVLPVTPLSPHRLPAVFSSSQNEDITEPQSILAAAE-------KAGMSAEQAQGL 211
P G S V+P T LP + ++ + +I S+ AE +AG+ G
Sbjct: 100 PKGPSAVVPSTSTGGVALP-ITTAIETVNIHGDHSLKNKAELADSMKNEAGIDEGHVIGE 158
Query: 212 LEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFG-SDRMELLAHLLGEK 269
E + + K+ +++ TE A + G+P+ + G+ L G +DR AH + E+
Sbjct: 159 SESVHSGASKHSVEKVTELAKGHLLPGVPVEDQSLPGEARALEGYADRGNFPAHPVNEE 217
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 30.4 bits (67), Expect = 1.8
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 159 PPGGSTVLPVTPLSPHRLPAVFSSSQNEDITEPQSILAAAE-------KAGMSAEQAQGL 211
P G S V+P T LP + ++ + +I S+ AE +AG+ G
Sbjct: 100 PKGPSAVVPSTSTGGVALP-ITTAIETVNIHGDHSLKNKAELADSMKNEAGIDEGHVIGE 158
Query: 212 LEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFG-SDRMELLAHLLGEK 269
E + + K+ +++ TE A + G+P+ + G+ L G +DR AH + E+
Sbjct: 159 SESVHSGASKHSVEKVTELAKGHLLPGVPVEDQSLPGEARALEGYADRGNFPAHPVNEE 217
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 168 VTPLSPHRLPAVFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKET 227
+TP S P+ S I+E + I A E G+S E A+ P+ QL +
Sbjct: 331 ITPPSSGTEPSAAESQGKGSISEDELITAIKEAKGLSYETAE-------NPRPVGQLADR 383
Query: 228 TEAACRYGAFGLPITVAH 245
E R G +P + H
Sbjct: 384 PEVKARSGPPTIPSPLDH 401
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 29.3 bits (64), Expect = 4.1
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 159 PPGGSTVLPVTPLSPHRLPAVFSSSQNE-DITEPQSILAAAEKAGMSAEQA--------Q 209
PPGGS L P+VFS+ NE D P SI +K ++
Sbjct: 1052 PPGGSGTESHILLEREEKPSVFSTDGNETDSIWPPSIFGPKKKFKPVVQRPVPKDTSLHS 1111
Query: 210 GLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLG 267
L+E I + K++L++T E + G P +++ + + +R LLA + G
Sbjct: 1112 ALMEAIHSAGGKDRLRKTAE----HTGEGRPAKLSYTEAE------GERSALLAAIRG 1159
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 29.3 bits (64), Expect = 4.1
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 73 LRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSR---V 129
+RH+L + K F V + GS S L A+N P ++K EL + W R +
Sbjct: 319 VRHNLSLN----KCFEKVENKSGSSSRKGCLWALN---PAKIDKMQEEL--QKWKRKDPI 369
Query: 130 SVGLWESSGRTLDDFLTFPRHVFRVMIL--PPPGGSTVLPVTPLSP 173
+V + LD + R +L PPPG S P+ PL+P
Sbjct: 370 AVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAP 415
>gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]
Length = 519
Score = 28.9 bits (63), Expect = 5.3
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 153 RVMILPPPGGSTVLPVTPLSPHRLPAVFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLL 212
R L PP S P +P + P+V S + PQ +L E+A AE+
Sbjct: 110 RKSFLYPPQESEPCPQSPSASATFPSVSDSLLQ--VAMPQKLLVTEEEANRLAEELVAEE 167
Query: 213 EKIATPKVKNQLKE 226
E++ K +LK+
Sbjct: 168 ERMKQKAEKKRLKK 181
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 28.9 bits (63), Expect = 5.3
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 148 PRHVFRVMILPPPGGSTVL--PVTPLSPHR-LPAVFSSSQ--NEDITEPQSILAA 197
P + +++ PP VL PV+PLSPHR L F+SS+ N+ PQ A
Sbjct: 2776 PESLSQLVSRQPPKSPQVLYSPVSPLSPHRLLDTSFASSERLNKAHVSPQKHFTA 2830
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 28.9 bits (63), Expect = 5.3
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 17/62 (27%)
Query: 157 LPPPGGSTVLPVTPLSPHRLPAVFSSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIA 216
LPP GSTV+P P P PQS A + G + + G+LE+
Sbjct: 527 LPPTDGSTVVPAGPEPP-----------------PQSSRAESSSGGGTVPSSAGILEQGP 569
Query: 217 TP 218
+P
Sbjct: 570 SP 571
>gi|122937428 phospholipase A2, group 4E [Homo sapiens]
Length = 839
Score = 28.5 bits (62), Expect = 6.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 78 QIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRVSVGLWESS 137
Q+P+ F+S+ L S +R T N +PE E + ++ RV + + + + +
Sbjct: 54 QVPVSQTDCFVSLWLPTASQKKLRTRTISNCPNPEWNESFNFQIQSRVKNVLELSVCDED 113
Query: 138 GRTLDDFL 145
T DD L
Sbjct: 114 TVTPDDHL 121
>gi|5730031 secretory carrier membrane protein 2 [Homo sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 9.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 163 STVLPVTPLSPHRLPAVFSSSQNEDITEPQSILAAAEKAGMSAEQAQ 209
+T +PVT L PAV S PQ++++AA+ AG+ +Q +
Sbjct: 46 ATTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQ-AGLLRQQEE 91
>gi|239757729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 9.0
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 153 RVMILPP--PGGSTVLPVTPLSPHRLPAVFS--SSQNEDITEPQSILAAAEKAGMSAEQA 208
R +PP PG +TP PA F+ +S+++ +T+ +I
Sbjct: 158 RARPVPPGLPGAPKQAALTPGRRPLTPAAFAPKASRDQQVTDSTTICQ------------ 205
Query: 209 QGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTH 251
+GL+E+ + + L E ++ + A G P ++A QTH
Sbjct: 206 RGLIEETGPARQISDLCEVSQGVGAFRAGGCPSSLASSREQTH 248
>gi|239752222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 9.0
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 153 RVMILPP--PGGSTVLPVTPLSPHRLPAVFS--SSQNEDITEPQSILAAAEKAGMSAEQA 208
R +PP PG +TP PA F+ +S+++ +T+ +I
Sbjct: 158 RARPVPPGLPGAPKQAALTPGRRPLTPAAFAPKASRDQQVTDSTTICQ------------ 205
Query: 209 QGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTH 251
+GL+E+ + + L E ++ + A G P ++A QTH
Sbjct: 206 RGLIEETGPARQISDLCEVSQGVGAFRAGGCPSSLASSREQTH 248
>gi|239746743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 9.0
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 153 RVMILPP--PGGSTVLPVTPLSPHRLPAVFS--SSQNEDITEPQSILAAAEKAGMSAEQA 208
R +PP PG +TP PA F+ +S+++ +T+ +I
Sbjct: 158 RARPVPPGLPGAPKQAALTPGRRPLTPAAFAPKASRDQQVTDSTTICQ------------ 205
Query: 209 QGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTH 251
+GL+E+ + + L E ++ + A G P ++A QTH
Sbjct: 206 RGLIEETGPARQISDLCEVSQGVGAFRAGGCPSSLASSREQTH 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,026,739
Number of Sequences: 37866
Number of extensions: 536336
Number of successful extensions: 1583
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1566
Number of HSP's gapped (non-prelim): 34
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.