Guide to the Human Genome
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Name: TBC1D23 Sequence: fasta or formatted (684aa) NCBI GI: 217035118
Description:

TBC1 domain family, member 23

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         43           2
 C cysteine            2.0         14           1
 D aspartate           6.6         45           3
 E glutamate           7.2         49           3
 F phenylalanine       3.7         25           2
 G glycine             5.7         39           2
 H histidine           2.9         20           2
 I isoleucine          6.9         47           2
 K lysine              6.4         44           3
 L leucine            10.4         71           3
 M methionine          2.2         15           1
 N asparagine          4.1         28           1
 P proline             4.1         28           2
 Q glutamine           4.2         29           2
 R arginine            3.4         23           1
 S serine             10.1         69           3
 T threonine           3.8         26           1
 V valine              5.6         38           2
 W tryptophan          1.2          8           1
 Y tyrosine            3.4         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 23 
TBC1D4                0.022   TBC1 domain family, member 4 
TBC1D2B               0.018   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.018   TBC1 domain family, member 2B isoform b 
TBC1D12               0.016   TBC1 domain family, member 12 
TBC1D14               0.014   TBC1 domain family, member 14 isoform b 
TBC1D14               0.014   TBC1 domain family, member 14 isoform a 
TBC1D14               0.014   TBC1 domain family, member 14 isoform a 
TBCKL                 0.013   TBC domain-containing protein kinase-like 
EVI5                  0.010   ecotropic viral integration site 5 
TBC1D22A              0.009   TBC1 domain family, member 22A 
EVI5L                 0.007   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.007   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D17               0.007   TBC1 domain family, member 17 
TBC1D7                0.007   TBC1 domain family, member 7 isoform a 
TBC1D7                0.007   TBC1 domain family, member 7 isoform a 
TBC1D7                0.007   TBC1 domain family, member 7 isoform a 
USP6NL                0.007   USP6 N-terminal like isoform 1 
USP6NL                0.007   USP6 N-terminal like isoform 2 
DUSP6                 0.007   dual specificity phosphatase 6 isoform a 
TBC1D19               0.006   TBC1 domain family, member 19 
TBC1D10A              0.006   TBC1 domain family, member 10A 
SDK1                  0.006   sidekick 1 
GREB1                 0.006   GREB1 protein isoform a 
SGSM3                 0.006   small G protein signaling modulator 3 
TBC1D10B              0.006   TBC1 domain family, member 10B 
CDC25C                0.005   cell division cycle 25C isoform a 
CDC25C                0.005   cell division cycle 25C isoform b 
CTTNBP2               0.005   cortactin binding protein 2 
TBC1D5                0.004   TBC1 domain family, member 5 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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