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Search of human proteins with 21687175
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21687175 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 1 [Homo sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21687175 leucine rich transmembrane and 0-methyltransferase d... 390 e-109
gi|223718151 leucine rich transmembrane and 0-methyltransferase ... 296 9e-81
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 57 1e-08
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 57 1e-08
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 51 5e-07
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 51 5e-07
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s... 49 3e-06
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s... 49 3e-06
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s... 49 3e-06
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s... 49 3e-06
gi|4826651 hypothetical protein LOC755 [Homo sapiens] 49 3e-06
gi|21389483 leucine-rich repeats and guanylate kinase domain con... 46 2e-05
gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo... 45 3e-05
gi|239735605 leucine rich repeat containing 36 isoform 1 [Homo s... 45 5e-05
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 44 8e-05
gi|66472382 nischarin [Homo sapiens] 44 1e-04
gi|157674358 leucine rich repeat containing 50 [Homo sapiens] 43 1e-04
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 40 0.001
gi|31621309 leucine rich repeat containing 6 [Homo sapiens] 40 0.001
gi|157785649 leucine-rich repeats and IQ motif containing 3 [Hom... 40 0.001
gi|109150416 peroxidasin [Homo sapiens] 40 0.002
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 39 0.004
gi|41350214 asporin [Homo sapiens] 37 0.008
gi|19718734 toll-like receptor 2 [Homo sapiens] 37 0.010
gi|239752702 PREDICTED: leucine rich repeat containing 38, parti... 37 0.013
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 37 0.013
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 37 0.013
gi|63003903 leucine rich repeat containing 10 [Homo sapiens] 37 0.013
gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo sa... 37 0.013
gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo sa... 36 0.018
>gi|21687175 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 1 [Homo sapiens]
Length = 192
Score = 390 bits (1001), Expect = e-109
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV
Sbjct: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
Query: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV
Sbjct: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
Query: 121 NKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNI 180
NKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNI
Sbjct: 121 NKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNI 180
Query: 181 KPKKAWTKQNTL 192
KPKKAWTKQNTL
Sbjct: 181 KPKKAWTKQNTL 192
>gi|223718151 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 2 [Homo sapiens]
Length = 158
Score = 296 bits (757), Expect = 9e-81
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV
Sbjct: 1 MNKRDYMNTSVQEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNV 60
Query: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV
Sbjct: 61 LNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEV 120
Query: 121 NKLAVLPRLRSLTLHGNPMEEEKGYR 146
NKLAVLPRLRSLTLHGNPMEEEKGYR
Sbjct: 121 NKLAVLPRLRSLTLHGNPMEEEKGYR 146
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 57.0 bits (136), Expect = 1e-08
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 16 LDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQL- 74
L+ SIH++ L +P + G L +L +N L +L + ++
Sbjct: 160 LNLKGNSIHMVTGL---DPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
Query: 75 -LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
LE NL + L N + ++ +L L L GN + LGE+ KL LP+LR+L
Sbjct: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
Query: 134 LHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
L NP +E YRQ L + + D + +R A+V R +K +K
Sbjct: 277 LLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADV-IRQRLKEEK 326
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 57.0 bits (136), Expect = 1e-08
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 16 LDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQL- 74
L+ SIH++ L +P + G L +L +N L +L + ++
Sbjct: 160 LNLKGNSIHMVTGL---DPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
Query: 75 -LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
LE NL + L N + ++ +L L L GN + LGE+ KL LP+LR+L
Sbjct: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
Query: 134 LHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
L NP +E YRQ L + + D + +R A+V R +K +K
Sbjct: 277 LLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADV-IRQRLKEEK 326
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 51.2 bits (121), Expect = 5e-07
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWID------LSFNDLTSIDPVLTTFFNLSVLYLH 110
N N L +LR N +A L H +NL +D L N +T + V L L+L
Sbjct: 20 NINHLCELRVLN-LARNFLSHVDNLNGLDSLTELNLRHNQITFVRDV-DNLPCLQHLFLS 77
Query: 111 GNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRT 170
N+I V+ LA L +T GNP+ +E Y+ VL + ++ D +T+ +R
Sbjct: 78 FNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERR 137
Query: 171 TAEVWKRMNIKPKKAWTKQNTL 192
A V + + K+ KQ+ L
Sbjct: 138 MASVLAKKEEEKKRESHKQSLL 159
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 51.2 bits (121), Expect = 5e-07
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWID------LSFNDLTSIDPVLTTFFNLSVLYLH 110
N N L +LR N +A L H +NL +D L N +T + V L L+L
Sbjct: 195 NINHLCELRVLN-LARNFLSHVDNLNGLDSLTELNLRHNQITFVRDV-DNLPCLQHLFLS 252
Query: 111 GNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRT 170
N+I V+ LA L +T GNP+ +E Y+ VL + ++ D +T+ +R
Sbjct: 253 FNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERR 312
Query: 171 TAEVWKRMNIKPKKAWTKQNTL 192
A V + + K+ KQ+ L
Sbjct: 313 MASVLAKKEEEKKRESHKQSLL 334
>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVN---KLAVLPR-------------------LRSLTLHGNPMEEEKGYRQYV 149
N I ++ ++ KL VL LR+L+L NP+ E + Y+ ++
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFI 178
Query: 150 LCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
L + D+ + + AE + +I K
Sbjct: 179 CAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELK 213
>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVN---KLAVLPR-------------------LRSLTLHGNPMEEEKGYRQYV 149
N I ++ ++ KL VL LR+L+L NP+ E + Y+ ++
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFI 178
Query: 150 LCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
L + D+ + + AE + +I K
Sbjct: 179 CAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELK 213
>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVN---KLAVLPR-------------------LRSLTLHGNPMEEEKGYRQYV 149
N I ++ ++ KL VL LR+L+L NP+ E + Y+ ++
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFI 178
Query: 150 LCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
L + D+ + + AE + +I K
Sbjct: 179 CAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELK 213
>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 48.5 bits (114), Expect = 3e-06
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
+ L L+NN++ + LE+ +L W+DLSFN++ +I+ L T NL L L
Sbjct: 68 RKLQLDNNIIEKIEG--------LENLAHLVWLDLSFNNIETIEG-LDTLVNLEDLSLFN 118
Query: 112 NSIQRLGEVN---KLAVLPR-------------------LRSLTLHGNPMEEEKGYRQYV 149
N I ++ ++ KL VL LR+L+L NP+ E + Y+ ++
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISEAEDYKMFI 178
Query: 150 LCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
L + D+ + + AE + +I K
Sbjct: 179 CAYLPDLMYLDYRRIDDHTKKLAEAKHQYSIDELK 213
>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
Length = 256
Score = 48.5 bits (114), Expect = 3e-06
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 61 LNDLRDFNQVASQLLE-----HPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQ 115
L+ +R N S+L + +L I LS N +++++PV + LS LYL N I
Sbjct: 17 LHSVRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPV-SRCQRLSELYLRRNRIP 75
Query: 116 RLGEVNKLAVLPRLRSLTLHGNPM--EEEKGYRQYVLCTLSRITTFDFSGVTKADRTTA 172
L E+ L LPRLR L L NP YR VL TL R+ D VT+ + + A
Sbjct: 76 SLAELFYLKGLPRLRVLWLAENPCCGTSPHRYRMTVLRTLPRLQKLDNQAVTEEELSRA 134
>gi|21389483 leucine-rich repeats and guanylate kinase domain
containing [Homo sapiens]
Length = 825
Score = 46.2 bits (108), Expect = 2e-05
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 75 LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTL 134
LE + L +DLS N ++S+ L L V+ L N I L E+ + LP LR L L
Sbjct: 276 LEDLKALQNLDLSHNQISSLQG-LENHDLLEVINLEDNKIAELREIEYIKNLPILRVLNL 334
Query: 135 HGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTA 172
NP++E+ Y +V+ L R+T D + ++ +A
Sbjct: 335 LENPIQEKSEYWFFVIFMLLRLTELDQKKIKVEEKVSA 372
Score = 27.3 bits (59), Expect = 8.2
Identities = 38/134 (28%), Positives = 52/134 (38%), Gaps = 25/134 (18%)
Query: 29 LVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSF 88
L E L L RS SG T+ ++LN L N + +L +L +DLS
Sbjct: 106 LREEAVAKALHHLGRSGSG---TEQVYLNLT----LSGCNLIDVSILCGYVHLQKLDLSA 158
Query: 89 NDLTSIDPV---------------LTTFFNLSV---LYLHGNSIQRLGEVNKLAVLPRLR 130
N + + V LTTFFN L S ++ E+ L+ L
Sbjct: 159 NKIEDLSCVSCMPYLLELNASQNNLTTFFNFKPPKNLKKADFSHNQISEICDLSAYHALT 218
Query: 131 SLTLHGNPMEEEKG 144
L L GN +EE G
Sbjct: 219 KLILDGNEIEEISG 232
>gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo
sapiens]
Length = 255
Score = 45.4 bits (106), Expect = 3e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 104 LSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSG 163
L+ L L NS+ LG+++ LA L L L++ NP+ +K YR YV+ + ++ DF
Sbjct: 90 LTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149
Query: 164 VTKADRTTAE 173
V +R AE
Sbjct: 150 VKLKERQEAE 159
>gi|239735605 leucine rich repeat containing 36 isoform 1 [Homo
sapiens]
Length = 754
Score = 44.7 bits (104), Expect = 5e-05
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 79 ENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNP 138
+NL +DLS N +TS+ + +L L L+ N+I L EV++L LP L+ L L NP
Sbjct: 50 KNLRSLDLSRNLITSLKGI-QYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKELDLRLNP 108
Query: 139 -MEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEV 174
+ ++ YR + + TL + D V + +R A++
Sbjct: 109 VVRKDTDYRLFAVYTLQTLEKLDDRTVREGERKAAKL 145
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 43.9 bits (102), Expect = 8e-05
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
Q LWL L DL + + L + S+N+++ + P L L VL L G
Sbjct: 119 QVLWLARCGLADLDGIASLPA--------LKELYASYNNISDLSP-LCLLEQLEVLDLEG 169
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGN 137
NS++ LG+V L + PRL LTL GN
Sbjct: 170 NSVEDLGQVRYLQLCPRLAMLTLEGN 195
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 75 LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG----------------------N 112
L+H NL +DLS+N L+S++ + T N+ L L G N
Sbjct: 328 LQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDN 387
Query: 113 SIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITT---FDFSGVTKADR 169
I+++ EV + LP L ++L NP+ YR VL + D + T+ +
Sbjct: 388 RIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVCLDDTVTTEKEL 447
Query: 170 TTAEVWKRMNIKPKKAWTK 188
T EV K + K K+ +K
Sbjct: 448 DTVEVLKAIQ-KAKEVKSK 465
>gi|157674358 leucine rich repeat containing 50 [Homo sapiens]
Length = 725
Score = 43.1 bits (100), Expect = 1e-04
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 26/185 (14%)
Query: 31 NEEPRTGLRPLKRSKSG---------KSLTQSLWLNNNVLNDLRDFN--------QVASQ 73
N E TGLR L +G ++ + L+L N+L + + +++
Sbjct: 124 NLEEYTGLRCLWLQSNGIQKIENLEAQTELRCLFLQMNLLRKIENLEPLQKLDALNLSNN 183
Query: 74 LLEHPENLAWI------DLSFNDLTSIDPV--LTTFFNLSVLYLHGNSIQRLGEVNKLAV 125
++ ENL+ + ++ N L +++ + L L VL L N + ++ L
Sbjct: 184 YIKTIENLSCLPVLNTLQMAHNHLETVEDIQHLQECLRLCVLDLSHNKLSDPEILSILES 243
Query: 126 LPRLRSLTLHGNPMEEE-KGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
+P LR L L GNP+ + YR+ V L +T D V DR AE W R +K
Sbjct: 244 MPDLRVLNLMGNPVIRQIPNYRRTVTVRLKHLTYLDDRPVFPKDRACAEAWARGGYAAEK 303
Query: 185 AWTKQ 189
+Q
Sbjct: 304 EERQQ 308
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 40.4 bits (93), Expect = 0.001
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 75 LEHPENLAWIDLSFNDLTSIDPVL-TTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
+E+ NL ++L+ N++ I L +L VL L GN I L +++KL L L SL
Sbjct: 165 IENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLI 224
Query: 134 LHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTA 172
L NP+ Y Q+ + L + + + VT DR A
Sbjct: 225 LVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEA 263
>gi|31621309 leucine rich repeat containing 6 [Homo sapiens]
Length = 466
Score = 40.4 bits (93), Expect = 0.001
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 54 LWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNS 113
L+L NN++ + + +++ + L +++L+ N++ I+ L L+ L L N
Sbjct: 49 LYLQNNLIGKIENVSKL--------KKLEYLNLALNNIEKIEN-LEGCEELAKLDLTVNF 99
Query: 114 IQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTA 172
I L + L L+ L L GNP YR++V+ TL ++ D + ++R A
Sbjct: 100 IGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVATLPQLKWLDGKEIEPSERIKA 158
>gi|157785649 leucine-rich repeats and IQ motif containing 3 [Homo
sapiens]
Length = 624
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 57 NNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFN----LSVLYLHGN 112
+NN + D+ L+ L +DL N + S+ T F+N L +LYLH N
Sbjct: 58 SNNFITDIHP--------LQSCIKLIKLDLHGNQIKSLPN--TKFWNGLKNLKLLYLHDN 107
Query: 113 SIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFD 160
+L + L+ P L +LT+ P+ +KGYR ++ ++ + D
Sbjct: 108 GFAKLKNICVLSACPTLIALTMFDCPVSLKKGYRHVLVNSIWPLKALD 155
>gi|109150416 peroxidasin [Homo sapiens]
Length = 1479
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 53 SLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSID-PVLTTFFNLSVLYLHG 111
+L LNNN + ++ S E ENL ++ L N++ SID +L LYLH
Sbjct: 90 TLLLNNNQIK------RIPSGAFEDLENLKYLYLYKNEIQSIDRQAFKGLASLEQLYLHF 143
Query: 112 NSIQRLGEVNKLAVLPRLRSLTLHGN 137
N I+ L + + LP+L L LH N
Sbjct: 144 NQIETL-DPDSFQHLPKLERLFLHNN 168
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 38.5 bits (88), Expect = 0.004
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 12/161 (7%)
Query: 12 QEPPLDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVA 71
Q PP++ S+ ++ + T + +G + L L N + +L V
Sbjct: 33 QIPPIEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVG 92
Query: 72 SQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRS 131
L E WI +F + ++ L +LY+ N ++ E KLA LP L
Sbjct: 93 DTLEE-----LWISYNFIEKLKGIHIMK---KLKILYMSNNLVKDWAEFVKLAELPCLED 144
Query: 132 LTLHGNPMEE----EKGYRQYVLCTLSRITTFDFSGVTKAD 168
L GNP+EE E + + + ++ D + V K D
Sbjct: 145 LVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGD 185
>gi|41350214 asporin [Homo sapiens]
Length = 380
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHG 111
Q L L NN + D+ + + L + + I L N L I L L +++LH
Sbjct: 268 QRLGLGNNKITDIENGS------LANIPRVREIHLENNKLKKIPSGLPELKYLQIIFLHS 321
Query: 112 NSIQRLGEVNKLAVLPRLR-----SLTLHGNPMEEEKGYRQYVLCTLSRIT 157
NSI R+G + +P+++ +++L NP++ + C LSR++
Sbjct: 322 NSIARVGVNDFCPTVPKMKKSLYSAISLFNNPVKYWEMQPATFRCVLSRMS 372
>gi|19718734 toll-like receptor 2 [Homo sapiens]
Length = 784
Score = 37.0 bits (84), Expect = 0.010
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 52 QSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPV-LTTFFNLSVLYLH 110
Q+L L +N +N + + + + LEH +DLS+N L+++ +L+ L L
Sbjct: 79 QALVLTSNGINTIEEDSFSSLGSLEH------LDLSYNYLSNLSSSWFKPLSSLTFLNLL 132
Query: 111 GNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRT 170
GN + LGE + + L +L+ L + GN + T ++I DF+G+T +
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRV-GN------------MDTFTKIQRKDFAGLTFLEEL 179
Query: 171 TAEVWKRMNIKPKKAWTKQN 190
+ + +PK + QN
Sbjct: 180 EIDASDLQSYEPKSLKSIQN 199
>gi|239752702 PREDICTED: leucine rich repeat containing 38, partial
[Homo sapiens]
Length = 254
Score = 36.6 bits (83), Expect = 0.013
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 66 DFNQVASQLLEHPENLAWIDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLA 124
+ Q+ + L + L+ N+L + + T +L VL L+ N+++ L V LA
Sbjct: 75 NLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLS-VAALA 133
Query: 125 VLPRLRSLTLHGNP 138
LP LRSL L GNP
Sbjct: 134 ALPALRSLRLDGNP 147
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 36.6 bits (83), Expect = 0.013
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 66 DFNQVASQLLEHPENLAWIDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLA 124
+ Q+ + L + L+ N+L + + T +L VL L+ N+++ L V LA
Sbjct: 229 NLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLS-VAALA 287
Query: 125 VLPRLRSLTLHGNP 138
LP LRSL L GNP
Sbjct: 288 ALPALRSLRLDGNP 301
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 36.6 bits (83), Expect = 0.013
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 66 DFNQVASQLLEHPENLAWIDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLA 124
+ Q+ + L + L+ N+L + + T +L VL L+ N+++ L V LA
Sbjct: 229 NLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLS-VAALA 287
Query: 125 VLPRLRSLTLHGNP 138
LP LRSL L GNP
Sbjct: 288 ALPALRSLRLDGNP 301
>gi|63003903 leucine rich repeat containing 10 [Homo sapiens]
Length = 277
Score = 36.6 bits (83), Expect = 0.013
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 54 LWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNS 113
L+L++N LN L L +NL + L FN+ ++ V+ T L +LYL N
Sbjct: 57 LYLSDNHLNSL-------PPELGQLQNLQILALDFNNFKALPQVVCTLKQLCILYLGNNK 109
Query: 114 IQRLGEVNKLAVLPRLRSLTLHGNPMEEEKGYRQYVLCTLSRITT 158
+ L ++L++L LR+L + N + + V+C LS + T
Sbjct: 110 LCDL--PSELSLLQNLRTLWIEANCLTQLPD----VVCELSLLKT 148
>gi|46397373 leucine rich repeat containing 20 isoform 2 [Homo
sapiens]
Length = 134
Score = 36.6 bits (83), Expect = 0.013
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 39 RPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQLLEHPENLAWIDLSFNDLTSIDPVL 98
R + + S T L L N L+ L ++V++ L+H L IDLS N L
Sbjct: 14 RKVNETVESGSDTLELHLEGNFLHRLP--SEVSA--LQH---LKAIDLSRNQFQDFPEQL 66
Query: 99 TTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEEE 142
T L + L N I + V KLA +P LRS+ L NP+ E
Sbjct: 67 TALPALETINLEENEIVDV-PVEKLAAMPALRSINLRFNPLNAE 109
>gi|46397369 leucine rich repeat containing 20 isoform 1 [Homo
sapiens]
Length = 184
Score = 36.2 bits (82), Expect = 0.018
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 79 ENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNP 138
++L IDLS N LT L + L N I + V KLA +P LRS+ L NP
Sbjct: 97 QHLKAIDLSRNQFQDFPEQLTALPALETINLEENEIVDV-PVEKLAAMPALRSINLRFNP 155
Query: 139 MEEE 142
+ E
Sbjct: 156 LNAE 159
Score = 30.0 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 84 IDLSFNDLTSI-DPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLTLHGNPMEE 141
I L+ N+L S+ +TTF L L+L GN + RL ++++ L L+++ L N ++
Sbjct: 55 ITLANNELKSLTSKFMTTFSQLRELHLEGNFLHRL--PSEVSALQHLKAIDLSRNQFQD 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,944,247
Number of Sequences: 37866
Number of extensions: 264119
Number of successful extensions: 1446
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 212
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.