Search of human proteins with 215490089

Search of human proteins with 215490089

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|215490089 Sin3A-associated protein, 18kDa [Homo sapiens]
         (172 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|215490089 Sin3A-associated protein, 18kDa [Homo sapiens]           350   3e-97
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H...    30   1.3  
gi|14589862 aspartate beta-hydroxylase isoform d [Homo sapiens]        29   1.8  
gi|9910364 aspartate beta-hydroxylase isoform e [Homo sapiens]         29   1.8  
gi|21704283 junctophilin 3 [Homo sapiens]                              28   3.0  
gi|237757326 synaptojanin 1 isoform d [Homo sapiens]                   28   3.9  
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]      28   5.1  
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]      28   5.1  
gi|190194374 hypothetical protein LOC144811 [Homo sapiens]             27   6.7  
gi|190194372 hypothetical protein LOC144811 [Homo sapiens]             27   6.7  
gi|209862789 microtubule associated monoxygenase, calponin and L...    27   8.7  
gi|116805342 human immunodeficiency virus type I enhancer bindin...    27   8.7  
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi...    27   8.7  

>gi|215490089 Sin3A-associated protein, 18kDa [Homo sapiens]
          Length = 172

 Score =  350 bits (898), Expect = 3e-97
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 60
           MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH
Sbjct: 1   MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 60

Query: 61  RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY 120
           RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY
Sbjct: 61  RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY 120

Query: 121 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 172
           RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY
Sbjct: 121 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 172


>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
           sapiens]
          Length = 1512

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 119 GYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 172
           G R    G++ SGR    +S  ++ ++     +    ITPP RAP P G   PY
Sbjct: 247 GRRSPSPGNSPSGRTVKSESPGVRRKRVSPVPFQSGRITPPRRAPSPDG-FSPY 299


>gi|14589862 aspartate beta-hydroxylase isoform d [Homo sapiens]
          Length = 210

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 9   QGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKT 44
           +G     +R+  A    +T+EE+KKE EKP  R+++
Sbjct: 79  EGPSGVAKRKTKAKVKELTKEELKKEKEKPESRKES 114


>gi|9910364 aspartate beta-hydroxylase isoform e [Homo sapiens]
          Length = 225

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 9   QGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKT 44
           +G     +R+  A    +T+EE+KKE EKP  R+++
Sbjct: 94  EGPSGVAKRKTKAKVKELTKEELKKEKEKPESRKES 129


>gi|21704283 junctophilin 3 [Homo sapiens]
          Length = 748

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 7   GGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFS 66
           G +G R    R  + V+   T+   +K+P  P  RE+       VFT  +  HHR    S
Sbjct: 538 GSRGVRSGALRGGLLVDDFRTRGSGRKQPGNPKPRERRTE-SPPVFTWTS--HHRASNHS 594

Query: 67  RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARK 101
            G     ELQ     +  ++    L  E +P+ R+
Sbjct: 595 PGGSRLLELQEEKLSNYRMEMKPLLRMETHPQKRR 629


>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
          Length = 1526

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 158  PPNRAPPPSGRMRP 171
            PP R PPPSGR +P
Sbjct: 1117 PPQRPPPPSGRSQP 1130


>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
          Length = 4363

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 61  RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFA---IVFTD--- 114
           R+ E +R      ++Q    +  TL  L  LV +   E+++     + +   ++F D   
Sbjct: 668 RVAEAARRQYNKLKMQTKAEIRQTLDRL--LVGDFIEESKRWTVRLDISAPQVIFPDDFK 725

Query: 115 VKRPGYRVKEIGSTM-------SGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPS 166
            K P   V ++G  +       S RK  D S + ++Q F   +Y     TPPN  PP S
Sbjct: 726 FKNPVLVVVDLGRMLLTNTQDNSRRKSRDGSASEETQ-FSDDEYKTPLATPPNTPPPES 783


>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
          Length = 4388

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 61  RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFA---IVFTD--- 114
           R+ E +R      ++Q    +  TL  L  LV +   E+++     + +   ++F D   
Sbjct: 668 RVAEAARRQYNKLKMQTKAEIRQTLDRL--LVGDFIEESKRWTVRLDISAPQVIFPDDFK 725

Query: 115 VKRPGYRVKEIGSTM-------SGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPS 166
            K P   V ++G  +       S RK  D S + ++Q F   +Y     TPPN  PP S
Sbjct: 726 FKNPVLVVVDLGRMLLTNTQDNSRRKSRDGSASEETQ-FSDDEYKTPLATPPNTPPPES 783


>gi|190194374 hypothetical protein LOC144811 [Homo sapiens]
          Length = 430

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 54  TNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFT 113
           T+NG    ++EF   + PS    +YT      ++  S +K + P  RK         +FT
Sbjct: 65  TSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFIDQLFT 124

Query: 114 DV 115
           DV
Sbjct: 125 DV 126


>gi|190194372 hypothetical protein LOC144811 [Homo sapiens]
          Length = 430

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 54  TNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFT 113
           T+NG    ++EF   + PS    +YT      ++  S +K + P  RK         +FT
Sbjct: 65  TSNGLSALLEEFEIVSCPSMAATLYTIKQKIDEKNLSSIKVIVPRHRKTLMKAFIDQLFT 124

Query: 114 DV 115
           DV
Sbjct: 125 DV 126


>gi|209862789 microtubule associated monoxygenase, calponin and LIM
            domain containing 3 isoform 1 [Homo sapiens]
          Length = 2002

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 123  KEIGSTMS-GRKGTDDSM-TLQSQKFQIGDYLDIAITPPNRAPPP 165
            +E+ S+   G  G+  +M TL SQ F   D     +TPP+  PPP
Sbjct: 1420 RELSSSSGLGLHGSSSNMKTLGSQSFNTSD--SAMLTPPSSPPPP 1462


>gi|116805342 human immunodeficiency virus type I enhancer binding
          protein 1 [Homo sapiens]
          Length = 2718

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 1  MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPI 39
          +L AGV G  E L G +RK      V +  +KK P+ P+
Sbjct: 33 ILQAGVKGTSESLKGVKRKKI----VAENHLKKIPKSPL 67


>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
           sapiens]
          Length = 783

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 16  RRRKMAVESRVTQEEIKK-----EP-EKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGN 69
           R++K  +E +V   + KK     EP E+ ID  K  P  ++     NG         +  
Sbjct: 96  RKKKEPIEKKVVSSKTKKVTKNEEPSEEEIDAPK--PKKMKKEKEMNGETREKSPKLKNG 153

Query: 70  VPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVK 116
            P  E       +A  +E  S +++  P  +K+G   NF I    +K
Sbjct: 154 FPHPEPDCNP-SEAASEESNSEIEQEIPVEQKEGAFSNFPISEETIK 199


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,207,479
Number of Sequences: 37866
Number of extensions: 307653
Number of successful extensions: 1082
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1077
Number of HSP's gapped (non-prelim): 13
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.