BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens] (210 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens] 427 e-120 gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens] 427 e-120 gi|63055059 SH3 and PX domains 2B [Homo sapiens] 33 0.13 gi|197383784 zinc finger protein 213 [Homo sapiens] 33 0.18 gi|32698678 zinc finger protein 213 [Homo sapiens] 33 0.18 gi|5032031 RNA binding motif protein 5 [Homo sapiens] 31 0.87 gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 30 1.1 gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 30 1.5 gi|11321642 bromodomain containing protein 1 [Homo sapiens] 30 1.9 gi|239747893 PREDICTED: zinc finger protein 806 [Homo sapiens] 29 2.5 gi|22035600 mitogen-activated protein kinase kinase kinase kinas... 29 2.5 gi|110349775 zinc finger protein 12 isoform b [Homo sapiens] 29 3.3 gi|66348108 zinc finger protein 12 isoform a [Homo sapiens] 29 3.3 gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like ... 28 4.3 gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 28 4.3 gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 28 5.6 gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 28 5.6 gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 28 5.6 gi|194018469 zinc finger protein 546 [Homo sapiens] 28 5.6 gi|57863253 zinc finger protein 500 [Homo sapiens] 28 7.4 gi|14249570 hypothetical protein LOC84934 [Homo sapiens] 28 7.4 gi|110349786 Alstrom syndrome 1 [Homo sapiens] 27 9.6 gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo s... 27 9.6 gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa... 27 9.6 gi|4507987 zinc finger protein 136 [Homo sapiens] 27 9.6 >gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens] Length = 210 Score = 427 bits (1097), Expect = e-120 Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE Sbjct: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60 Query: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH Sbjct: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120 Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY Sbjct: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180 Query: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV Sbjct: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210 >gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens] Length = 210 Score = 427 bits (1097), Expect = e-120 Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE Sbjct: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60 Query: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH Sbjct: 61 KQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYH 120 Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY Sbjct: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDLYIEVYPGTY 180 Query: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV Sbjct: 181 SVTVGSNDLTKKTHVVAVDSGQSVDLVFPV 210 >gi|63055059 SH3 and PX domains 2B [Homo sapiens] Length = 911 Score = 33.5 bits (75), Expect = 0.13 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 14/146 (9%) Query: 35 RAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMD 94 + + A RP +++ P + Q A + V+P R P S+S R + E Sbjct: 722 KEISCRAPPRPAKTTDPVSKSVP-VPLQEAPQQRPVVPPRRPPPPKKTSSSSRPLPEVR- 779 Query: 95 YTSSQCGKYYS-SVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQI 153 QC + S + P G A V ++K + +G GQ R K SLGP G+ +I Sbjct: 780 --GPQCEGHESRAAPTPGRALLV----PPKAKPFLSNSLG-GQDDTRGKGSLGPWGTGKI 832 Query: 154 SEH---APEASQP-AENISKDLYIEV 175 E+ A AS P A+ + LY+ V Sbjct: 833 GENREKAAAASVPNADGLKDSLYVAV 858 >gi|197383784 zinc finger protein 213 [Homo sapiens] Length = 459 Score = 33.1 bits (74), Expect = 0.18 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 55 EAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGAT 114 EA E +P A V+ G R RPPT FR +A ++ QCGK + + A Sbjct: 278 EAWESENRPRAALGPVV-GARRGRPPTRRRQFRDLAAEKPHSCGQCGKRFRWGSDL--AR 334 Query: 115 HVYRYHRGESKLHMC 129 H R H GE K H C Sbjct: 335 H-QRTHTGE-KPHKC 347 >gi|32698678 zinc finger protein 213 [Homo sapiens] Length = 459 Score = 33.1 bits (74), Expect = 0.18 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 5/75 (6%) Query: 55 EAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGAT 114 EA E +P A V+ G R RPPT FR +A ++ QCGK + + A Sbjct: 278 EAWESENRPRAALGPVV-GARRGRPPTRRRQFRDLAAEKPHSCGQCGKRFRWGSDL--AR 334 Query: 115 HVYRYHRGESKLHMC 129 H R H GE K H C Sbjct: 335 H-QRTHTGE-KPHKC 347 >gi|5032031 RNA binding motif protein 5 [Homo sapiens] Length = 815 Score = 30.8 bits (68), Expect = 0.87 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 9/111 (8%) Query: 63 PAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGKYY--SSVPEEGGATHVYRYH 120 PAA P V+PG + P T + + + + Y G YY +S T Y Y Sbjct: 441 PAASPTGVVPGTKYAVPDTSTYQYDESSGY--YYDPTTGLYYDPNSQYYYNSLTQQYLYW 498 Query: 121 RGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQPAENISKDL 171 GE + + + + +++ L P + + P+ S+ A+ I+KD+ Sbjct: 499 DGEKETY----VPAAESSSHQQSGLPPAKEGKEKKEKPK-SKTAQQIAKDM 544 >gi|55741661 hypothetical protein LOC57653 [Homo sapiens] Length = 1646 Score = 30.4 bits (67), Expect = 1.1 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 16/117 (13%) Query: 29 LERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRT 88 ++ K++ +DW A EA L Q L G+ EE L SF T Sbjct: 595 VQNCKKQLLDWKAFTE---------EEAETLVNQFFFQMVGALQGKVEEDLELLDKSFET 645 Query: 89 MAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKDRKKTSL 145 +A+ ++ SS KY+ V ++ H+ E L L++ + R+K SL Sbjct: 646 LADQTEWQSSHLFKYFQEV------VQLWEAHQSE-LLVQELELEKRMEQHRQKHSL 695 >gi|4507963 zinc finger protein 37 homolog [Homo sapiens] Length = 630 Score = 30.0 bits (66), Expect = 1.5 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 69 RVLPGEREERPPTLSASF---RTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESK 125 ++ GE+ E+ P+LS+S + A Y +QCGK S + G R H GE K Sbjct: 264 KIQTGEKHEKSPSLSSSTKHEKPQACVKPYECNQCGKVLS---HKQGLIDHQRVHTGE-K 319 Query: 126 LHMCLDIG 133 + C + G Sbjct: 320 PYECNECG 327 >gi|11321642 bromodomain containing protein 1 [Homo sapiens] Length = 1058 Score = 29.6 bits (65), Expect = 1.9 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 10/78 (12%) Query: 1 MDNCLAAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLE 60 +DNC+ A + V R+ R VL +A RR VD LE G HL Sbjct: 635 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQA-RREVDSIGLEEASGM---------HLP 684 Query: 61 KQPAAGPQRVLPGEREER 78 ++PAA P+R E +R Sbjct: 685 ERPAAAPRRPFSWEDVDR 702 >gi|239747893 PREDICTED: zinc finger protein 806 [Homo sapiens] Length = 589 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Query: 73 GEREERPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHV-YRYHRGESKLHMCLD 131 G+R E+ L R Y SS+CGK +SS V +R+H GE K + C + Sbjct: 377 GKRFEQSSNLLIHQRVHTGGKPYKSSECGKCFSS----SSVLQVHWRFHTGE-KPYRCGE 431 Query: 132 IGNG 135 G G Sbjct: 432 CGKG 435 >gi|22035600 mitogen-activated protein kinase kinase kinase kinase 2 [Homo sapiens] Length = 820 Score = 29.3 bits (64), Expect = 2.5 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 11/94 (11%) Query: 17 SLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHL--------EKQPAAGPQ 68 SL +S + ALE R A ++ L+ P MG + R AP L ++P + P Sbjct: 367 SLLQSVQEALEERSLTIRSASEFQELDSPDDTMGTIKR-APFLGPLPTDPPAEEPLSSPP 425 Query: 69 RVL--PGEREERPPTLSASFRTMAEFMDYTSSQC 100 L P P L ++ TM + D S C Sbjct: 426 GTLPPPPSGPNSSPLLPTAWATMKQREDPERSSC 459 >gi|110349775 zinc finger protein 12 isoform b [Homo sapiens] Length = 659 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 78 RPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIG 133 R TL+ RT Y ++CGK++S + T YR H GE K + C + G Sbjct: 382 RKSTLTTHLRTHTGEKPYECNECGKFFSRL---SYLTVHYRTHSGE-KPYECNECG 433 >gi|66348108 zinc finger protein 12 isoform a [Homo sapiens] Length = 697 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 78 RPPTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIG 133 R TL+ RT Y ++CGK++S + T YR H GE K + C + G Sbjct: 420 RKSTLTTHLRTHTGEKPYECNECGKFFSRL---SYLTVHYRTHSGE-KPYECNECG 471 >gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like [Homo sapiens] Length = 484 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 154 SEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQS 203 SEH A ++ S++ +E +PG S+T+GS ++ + +SGQ+ Sbjct: 131 SEHLDMAPFSSDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQT 180 >gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] Length = 1597 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/50 (30%), Positives = 28/50 (56%) Query: 154 SEHAPEASQPAENISKDLYIEVYPGTYSVTVGSNDLTKKTHVVAVDSGQS 203 SEH A ++ S++ +E +PG S+T+GS ++ + +SGQ+ Sbjct: 131 SEHLDMAPFSSDLGSEEEEVEFWPGLTSLTLGSGQAEEEEETSSDNSGQT 180 >gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform b [Homo sapiens] Length = 1173 Score = 28.1 bits (61), Expect = 5.6 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Query: 6 AAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAA 65 A A L + + Q RL E E ++R H LER + + RE LE Sbjct: 896 AGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRL 955 Query: 66 GPQRVLPGE------REERPPTLSASF 86 Q PG E +PP+ SF Sbjct: 956 KKQNTAPGALPPDTLAEAQPPSHPPSF 982 >gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a [Homo sapiens] Length = 1015 Score = 28.1 bits (61), Expect = 5.6 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Query: 6 AAAALNGVDRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAA 65 A A L + + Q RL E E ++R H LER + + RE LE Sbjct: 738 AGARLQEREGEARQLRERLEQERAELERQRQAYQHDLERLREAQRAVERERERLELLRRL 797 Query: 66 GPQRVLPGE------REERPPTLSASF 86 Q PG E +PP+ SF Sbjct: 798 KKQNTAPGALPPDTLAEAQPPSHPPSF 824 >gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] Length = 465 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/58 (31%), Positives = 26/58 (44%) Query: 14 DRRSLQRSARLALEVLERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVL 71 D R +A L L RA+RR++ A + G L +E P E + P+R L Sbjct: 69 DSRVTPATALLLLSHRGRAQRRSIQAAAAQEQSTGRGCLGKEPPSQESWTRSDPRRCL 126 >gi|194018469 zinc finger protein 546 [Homo sapiens] Length = 836 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 82 LSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQR 137 L+ RT + Y +CGK +SS T YR H GE K ++C + G R Sbjct: 484 LTLHLRTHTGEIPYECKECGKTFSS---RYHLTQHYRIHTGE-KPYICNECGKAFR 535 >gi|57863253 zinc finger protein 500 [Homo sapiens] Length = 480 Score = 27.7 bits (60), Expect = 7.4 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 22/134 (16%) Query: 40 HALERPKGCM----------GVLAREAPHLEKQPAAGPQRVLPGEREERPPTLSASFRTM 89 H ERP C+ + H ++P P+ G+R + +L RT Sbjct: 347 HTGERPYKCLVCGKGFSDRSNFSTHQRVHTGEKPYPCPEC---GKRFSQSSSLVIHRRTH 403 Query: 90 AEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRK-----DRKKTS 144 + Y +QCGK +++ + H R H GE K + C G G R+ ++T Sbjct: 404 SGERPYACTQCGKRFNN--SSHFSAH-RRTHTGE-KPYTCPACGRGFRRGTDLHKHQRTH 459 Query: 145 LGPGGSYQISEHAP 158 +G G + AP Sbjct: 460 MGAGSLPTLQPVAP 473 >gi|14249570 hypothetical protein LOC84934 [Homo sapiens] Length = 269 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 30 ERAKRRAVDWHALERPKGCMGVLAREAPHLEKQPAAGPQRVLPG 73 + AK RA+ W P+G REAP P AGP + PG Sbjct: 133 DAAKLRALLWTPPPTPRGSHSPRPREAPLRAIHP-AGPSKTEPG 175 >gi|110349786 Alstrom syndrome 1 [Homo sapiens] Length = 4169 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 46 KGCMGVLAREAPHLEKQP----AAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSS 98 KGC L E P L++ P +AGP + G + P + A ++ +D +S Sbjct: 2585 KGCFRTLTSEHPQLDRHPCAFRSAGPSEMTRG--RQNPSSCRAKHVNLSASLDQNNS 2639 >gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo sapiens] Length = 422 Score = 27.3 bits (59), Expect = 9.6 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%) Query: 57 PHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGK--YYSSVPEEGGAT 114 P++ P A PQ + P L AS AE + + G Y + P EG + Sbjct: 193 PYVPGAPGALPQGAFMSQGARAVPVLQASLAMPAEGISQPAPARGDFLYATPTPPEGALS 252 Query: 115 HV----YRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQP 163 H + H G+S R+DR+ G G + + P ++P Sbjct: 253 HPQAPRWPAHPGKS------------REDRELQLDGLPGPCTVGQPGPAQARP 293 >gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sapiens] Length = 422 Score = 27.3 bits (59), Expect = 9.6 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 18/113 (15%) Query: 57 PHLEKQPAAGPQRVLPGEREERPPTLSASFRTMAEFMDYTSSQCGK--YYSSVPEEGGAT 114 P++ P A PQ + P L AS AE + + G Y + P EG + Sbjct: 193 PYVPGAPGALPQGAFMSQGARAVPVLQASLAMPAEGISQPAPARGDFLYATPTPPEGALS 252 Query: 115 HV----YRYHRGESKLHMCLDIGNGQRKDRKKTSLGPGGSYQISEHAPEASQP 163 H + H G+S R+DR+ G G + + P ++P Sbjct: 253 HPQAPRWPAHPGKS------------REDRELQLDGLPGPCTVGQPGPAQARP 293 >gi|4507987 zinc finger protein 136 [Homo sapiens] Length = 540 Score = 27.3 bits (59), Expect = 9.6 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 80 PTLSASFRTMAEFMDYTSSQCGKYYSSVPEEGGATHVYRYHRGESKLHMCLDIGNGQRKD 139 PTL RT Y QCGK +S +P R H GE K +C G R Sbjct: 293 PTLRIHERTHTGEKPYECKQCGKAFSYLP---SLRLHERIHTGE-KPFVCKQCGKAFRS- 347 Query: 140 RKKTSLGPGGSYQISEHAPEASQPAE 165 ++QI E +P E Sbjct: 348 --------ASTFQIHERTHTGEKPYE 365 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.131 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,921,175 Number of Sequences: 37866 Number of extensions: 439292 Number of successful extensions: 1020 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 1009 Number of HSP's gapped (non-prelim): 29 length of query: 210 length of database: 18,247,518 effective HSP length: 98 effective length of query: 112 effective length of database: 14,536,650 effective search space: 1628104800 effective search space used: 1628104800 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.