RPRD1A 13020

Name: RPRD1A	Sequence: fasta or formatted (312aa)		NCBI GI: 21361709
Description: regulation of nuclear pre-mRNA domain containing 1A		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.4 23 2 C cysteine 1.3 4 1 D aspartate 6.1 19 2 E glutamate 9.9 31 2 F phenylalanine 2.2 7 1 G glycine 2.9 9 1 H histidine 2.9 9 2 I isoleucine 3.5 11 1 K lysine 8.7 27 2 L leucine 12.5 39 2 M methionine 1.6 5 1 N asparagine 3.2 10 1 P proline 3.8 12 2 Q glutamine 4.5 14 2 R arginine 7.4 23 1 S serine 9.3 29 2 T threonine 3.2 10 1 V valine 6.4 20 1 W tryptophan 1.0 3 1 Y tyrosine 2.2 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 regulation of nuclear pre-mRNA domain containing 1A ... RPRD1B 0.658 Regulation of nuclear pre-mRNA domain containing 1B ... RPRD2 0.160 Regulation of nuclear pre-mRNA domain containing 2 ... PCF11 0.036 pre-mRNA cleavage complex II protein Pcf11 SFRS15 0.031 splicing factor, arginine/serine-rich 15 isoform 3 ... SFRS15 0.031 splicing factor, arginine/serine-rich 15 isoform 1 [... RBM16 0.029 RNA-binding motif protein 16 WDR87 0.026 NYD-SP11 protein RILP 0.026 Rab interacting lysosomal protein CHERP 0.026 calcium homeostasis endoplasmic reticulum protein [... SYNE2 0.024 spectrin repeat containing, nuclear envelope 2 isof... SYNE2 0.024 spectrin repeat containing, nuclear envelope 2 isof... GOLGA8B 0.024 golgi autoantigen, golgin subfamily a, 8B GOLGA8A 0.024 golgi autoantigen, golgin subfamily a, 8A SFRS15 0.022 splicing factor, arginine/serine-rich 15 isoform 2 ... CLIP1 0.020 restin isoform b CLIP1 0.020 restin isoform a NUMA1 0.019 nuclear mitotic apparatus protein 1 NASP 0.017 nuclear autoantigenic sperm protein isoform 3 PPFIA2 0.017 PTPRF interacting protein alpha 2 MYH3 0.017 myosin, heavy chain 3, skeletal muscle, embryonic [H... LRRFIP2 0.015 leucine rich repeat (in FLII) interacting protein 2 i... CENPE 0.015 centromere protein E CENPF 0.015 centromere protein F GOLGB1 0.015 golgi autoantigen, golgin subfamily b, macrogolgin ... CCDC146 0.014 coiled-coil domain containing 146 KRT14 0.014 keratin 14 CEP63 0.014 centrosomal protein 63 isoform b CEP63 0.014 centrosomal protein 63 isoform a CEP63 0.014 centrosomal protein 63 isoform d Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.