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Search of human proteins with 21361661
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361661 COMM domain containing 4 [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361661 COMM domain containing 4 [Homo sapiens] 387 e-108
gi|239745242 PREDICTED: similar to COMM domain containing 4 [Hom... 242 2e-64
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens] 241 4e-64
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens] 240 7e-64
gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom... 231 2e-61
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom... 218 2e-57
gi|151101369 COMM domain containing 7 isoform 1 [Homo sapiens] 49 3e-06
gi|151101367 COMM domain containing 7 isoform 2 [Homo sapiens] 47 1e-05
gi|7706663 COMM domain containing 10 [Homo sapiens] 46 2e-05
gi|8923458 COMM domain containing 8 [Homo sapiens] 38 0.005
gi|22749079 MURR1 [Homo sapiens] 36 0.025
gi|67763814 death-inducing-protein [Homo sapiens] 31 0.79
gi|29570782 additional sex combs like 1 [Homo sapiens] 30 1.0
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 30 1.8
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 30 1.8
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens] 30 1.8
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 30 1.8
gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom... 29 3.0
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom... 29 3.0
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom... 29 3.0
gi|4502995 phakinin [Homo sapiens] 28 3.9
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso... 28 3.9
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso... 28 3.9
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 28 5.1
gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens] 28 5.1
gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens] 28 5.1
gi|169216359 PREDICTED: hypothetical protein [Homo sapiens] 28 6.7
gi|169216600 PREDICTED: hypothetical protein [Homo sapiens] 28 6.7
gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens] 27 8.8
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 27 8.8
>gi|21361661 COMM domain containing 4 [Homo sapiens]
Length = 199
Score = 387 bits (994), Expect = e-108
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF
Sbjct: 1 MRFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKF 60
Query: 61 ESGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKH 120
ESGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKH
Sbjct: 61 ESGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKH 120
Query: 121 LRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADK 180
LRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADK
Sbjct: 121 LRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADK 180
Query: 181 FQVLLAELKQAQTLMSSLG 199
FQVLLAELKQAQTLMSSLG
Sbjct: 181 FQVLLAELKQAQTLMSSLG 199
>gi|239745242 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 344
Score = 242 bits (617), Expect = 2e-64
Identities = 121/128 (94%), Positives = 124/128 (96%)
Query: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
RF FCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 156 RFWFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFE 215
Query: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
SGDVKATVAVLSF+LS AKHSVDGESL+SELQQLGLPKEHAASLCRCYEEKQSPLQKHL
Sbjct: 216 SGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL 275
Query: 122 RVCSLRMN 129
RVCSLR N
Sbjct: 276 RVCSLRSN 283
>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 456
Score = 241 bits (614), Expect = 4e-64
Identities = 122/131 (93%), Positives = 125/131 (95%)
Query: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
RF FCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 156 RFWFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFE 215
Query: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
SGDVKATVAVLSF+LS AKHSVDGESL+SELQQLGLPKEHAASLCRCYEEKQSPLQKHL
Sbjct: 216 SGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL 275
Query: 122 RVCSLRMNRLA 132
RVCSLR LA
Sbjct: 276 RVCSLRTWSLA 286
>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 344
Score = 240 bits (612), Expect = 7e-64
Identities = 120/128 (93%), Positives = 123/128 (96%)
Query: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
RF FCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 156 RFWFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFE 215
Query: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
SGDVKATVAVLSF+LS AKHSVDGESL+SELQQLGLPKEHAASLC CYEEKQSPLQKHL
Sbjct: 216 SGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCHCYEEKQSPLQKHL 275
Query: 122 RVCSLRMN 129
RVCSLR N
Sbjct: 276 RVCSLRSN 283
>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 422
Score = 231 bits (590), Expect = 2e-61
Identities = 118/126 (93%), Positives = 122/126 (96%)
Query: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
RFRFCGDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 47 RFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFE 106
Query: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
SGDVKATVAVLSFILS AAKHSVDG+SL+SELQQLGLPKEHAAS C CYEEKQSPLQKHL
Sbjct: 107 SGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHL 166
Query: 122 RVCSLR 127
RVCSLR
Sbjct: 167 RVCSLR 172
>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 437
Score = 218 bits (556), Expect = 2e-57
Identities = 115/126 (91%), Positives = 118/126 (93%), Gaps = 1/126 (0%)
Query: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
RFRFCGDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFE
Sbjct: 63 RFRFCGDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDV-KDQKLTADAKFE 121
Query: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
SGDVKATVAVLSFILS AAKHSVDG+SL+SELQQLGLPKEHAAS C CYEEKQSPLQKHL
Sbjct: 122 SGDVKATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHL 181
Query: 122 RVCSLR 127
RVCSLR
Sbjct: 182 RVCSLR 187
>gi|151101369 COMM domain containing 7 isoform 1 [Homo sapiens]
Length = 200
Score = 48.9 bits (115), Expect = 3e-06
Identities = 41/194 (21%), Positives = 89/194 (45%), Gaps = 7/194 (3%)
Query: 6 CGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKIL----KLTADAKFE 61
C + P+ V ++ L ++ + + L ++VL L + + E+ L + +
Sbjct: 6 CTEDPVPEAVGGDMQQLNQLGAQQFSAL-TEVLFHFLTEPKEVERFLAQLSEFATTNQIS 64
Query: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
G +++ V L + + A K S+ + + ++ LGL +E A +++ L +
Sbjct: 65 LGSLRSIVKSLLLVPNGALKKSLTAKQVQADFITLGLSEEKATYFSEKWKQNAPTLARWA 124
Query: 122 RVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKF 181
+L +N+L + W+ T SS L+ V + L+L++ G + V + L+ +F
Sbjct: 125 IGQTLMINQLIDMEWKFGVTSGSSELEKVGS--IFLQLKLVVKKGNQTENVYIELTLPQF 182
Query: 182 QVLLAELKQAQTLM 195
L E+++ +T M
Sbjct: 183 YSFLHEMERVRTSM 196
>gi|151101367 COMM domain containing 7 isoform 2 [Homo sapiens]
Length = 199
Score = 46.6 bits (109), Expect = 1e-05
Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 35 SQVLKELLGQGIDYEKIL----KLTADAKFESGDVKATVAVLSFILSSAAKHSVDGESLS 90
++VL L + + E+ L + + G +++ V L + + A K S+ + +
Sbjct: 33 TEVLFHFLTEPKEVERFLAQLSEFATTNQISLGSLRSIVKSLLLVPNGALKKSLTAKQVQ 92
Query: 91 SELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSLLQSV 150
++ LGL +E A +++ L + +L +N+L + W+ T SS L+ V
Sbjct: 93 ADFITLGLSEEKATYFSEKWKQNAPTLARWAIGQTLMINQLIDMEWKFGVTSGSSELEKV 152
Query: 151 EEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLM 195
+ L+L++ G + V + L+ +F L E+++ +T M
Sbjct: 153 GS--IFLQLKLVVKKGNQTENVYIELTLPQFYSFLHEMERVRTSM 195
>gi|7706663 COMM domain containing 10 [Homo sapiens]
Length = 202
Score = 46.2 bits (108), Expect = 2e-05
Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 3/183 (1%)
Query: 19 ISTLAKMSSVKLRLLCSQVLKEL---LGQGIDYEKILKLTADAKFESGDVKATVAVLSFI 75
+S + + + + L +++L++L E+ KL A E D+ + +SFI
Sbjct: 19 VSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVLETISFI 78
Query: 76 LSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVG 135
L A H+V +L +L+ + L ++ A + + + R L +L VG
Sbjct: 79 LEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRILAPCKLETVG 138
Query: 136 WRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLM 195
W+++ ++ S ++ P L+L V + V + S + +L+ Q +
Sbjct: 139 WQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEFSHKELFDFYNKLETIQAQL 198
Query: 196 SSL 198
SL
Sbjct: 199 DSL 201
>gi|8923458 COMM domain containing 8 [Homo sapiens]
Length = 183
Score = 38.1 bits (87), Expect = 0.005
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
Query: 75 ILSSAAKH--SVDGESLSSE--LQQLG-LPKEHAASLCRCYEEKQSPLQKHL--RVCSLR 127
+L AK ++ G++L E QQL L H ++ +C + ++ +++ L + ++
Sbjct: 54 VLEDIAKFFKAIVGKNLPDEEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVAIS 113
Query: 128 MNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAE 187
+L W+V LSS + ++ P++ L L+V +P ++ +S ++ Q L+
Sbjct: 114 SAQLQDFDWQVKLALSSDKIAALRMPLLSLHLDV--KENGEVKPYSIEMSREELQNLIQS 171
Query: 188 LKQAQTLMSSL 198
L+ A ++ L
Sbjct: 172 LEAANKVVLQL 182
>gi|22749079 MURR1 [Homo sapiens]
Length = 190
Score = 35.8 bits (81), Expect = 0.025
Identities = 32/155 (20%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 49 EKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDGESLSSEL-----QQLGLPKEHA 103
E++L+ + + + +A + IL S A +D L + L +Q G+ + A
Sbjct: 32 EELLRSQLYPEVPPEEFRPFLAKMRGILKSIASADMDFNQLEAFLTAQTKKQGGITSDQA 91
Query: 104 ASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAA 163
A + + ++ ++ +++ L S + L G+ WRVD S + P+ + LE+
Sbjct: 92 AVISKFWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPVAIIELELGK 151
Query: 164 APGTPAQPVAMSLSADKFQVLLAELKQAQTLMSSL 198
G ++ + + K +L L + + +S+L
Sbjct: 152 Y-GQESEFLCLEFDEVKVNQILKTLSEVEESISTL 185
>gi|67763814 death-inducing-protein [Homo sapiens]
Length = 578
Score = 30.8 bits (68), Expect = 0.79
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 18/83 (21%)
Query: 116 PLQKHLRVCSLRMNRLAGVGWRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMS 175
PL L + L +N L GWR+ +++ + + VE P L +
Sbjct: 252 PLFLFLAILRLSLNYLIARGWRIQWSIVPEVSEPVEPPKEDLTV---------------- 295
Query: 176 LSADKFQVLLAELKQAQTLMSSL 198
++KFQ++L ++AQ L +
Sbjct: 296 --SEKFQLVLDVAQKAQNLFGKM 316
>gi|29570782 additional sex combs like 1 [Homo sapiens]
Length = 1541
Score = 30.4 bits (67), Expect = 1.0
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 98 LPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVG---WRVDYTLSSSLLQSVEEPM 154
LP H S+ E Q PL K SLRM L G+G VD + S S L++++EP+
Sbjct: 1122 LPPAHDDSMS---ESPQVPLTKDQSHGSLRMGSLHGLGKNSGMVDGS-SPSSLRALKEPL 1177
Query: 155 VH---------LRLEVAAAPGTP 168
+ R+E APG P
Sbjct: 1178 LPDSCETGTGLARIEATQAPGAP 1200
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 29.6 bits (65), Expect = 1.8
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 76 LSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVG 135
L S+++ S D SLS+ Q + +S R + K S + + + +++++ +
Sbjct: 6 LPSSSEDSDDNGSLSTTWSQNSRSQHRRSSCSRHEDRKPSEVFRTDLITAMKLHDSYQLN 65
Query: 136 WRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADK 180
Y L+ Q E+ + +V +PGT QPVA +S +K
Sbjct: 66 PDEYYVLADPWRQEWEKGV-----QVPVSPGTIPQPVARVVSEEK 105
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 29.6 bits (65), Expect = 1.8
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 76 LSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVG 135
L S+++ S D SLS+ Q + +S R + K S + + + +++++ +
Sbjct: 6 LPSSSEDSDDNGSLSTTWSQNSRSQHRRSSCSRHEDRKPSEVFRTDLITAMKLHDSYQLN 65
Query: 136 WRVDYTLSSSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADK 180
Y L+ Q E+ + +V +PGT QPVA +S +K
Sbjct: 66 PDEYYVLADPWRQEWEKGV-----QVPVSPGTIPQPVARVVSEEK 105
>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
Length = 1173
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/80 (21%), Positives = 36/80 (45%)
Query: 22 LAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAK 81
L +++ + L+L C++ K + Y K L +K +K+T+A+ F L +
Sbjct: 1023 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1082
Query: 82 HSVDGESLSSELQQLGLPKE 101
+ ++ +E+ P E
Sbjct: 1083 EEIVAKNARAEIDYSDAPDE 1102
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/80 (21%), Positives = 36/80 (45%)
Query: 22 LAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAK 81
L +++ + L+L C++ K + Y K L +K +K+T+A+ F L +
Sbjct: 1152 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1211
Query: 82 HSVDGESLSSELQQLGLPKE 101
+ ++ +E+ P E
Sbjct: 1212 EEIVAKNARAEIDYSDAPDE 1231
>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 28.9 bits (63), Expect = 3.0
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 83 SVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL-RVCSLRMNRLAGVGWRVDYT 141
S+ + +LQ+L +P++ L Q PL + + + +A W VD T
Sbjct: 152 SLKPNTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVT 211
Query: 142 LSSSLLQSVEEPMVHLRLEVA 162
+S+S L +P V ++L+++
Sbjct: 212 ISTSALARFLQPRVLMQLKLS 232
>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 28.9 bits (63), Expect = 3.0
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 83 SVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL-RVCSLRMNRLAGVGWRVDYT 141
S+ + +LQ+L +P++ L Q PL + + + +A W VD T
Sbjct: 152 SLKPNTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVT 211
Query: 142 LSSSLLQSVEEPMVHLRLEVA 162
+S+S L +P V ++L+++
Sbjct: 212 ISTSALARFLQPRVLMQLKLS 232
>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
sapiens]
Length = 273
Score = 28.9 bits (63), Expect = 3.0
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 83 SVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL-RVCSLRMNRLAGVGWRVDYT 141
S+ + +LQ+L +P++ L Q PL + + + +A W VD T
Sbjct: 152 SLKPNTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVT 211
Query: 142 LSSSLLQSVEEPMVHLRLEVA 162
+S+S L +P V ++L+++
Sbjct: 212 ISTSALARFLQPRVLMQLKLS 232
>gi|4502995 phakinin [Homo sapiens]
Length = 415
Score = 28.5 bits (62), Expect = 3.9
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Query: 89 LSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLSSSLLQ 148
L S+++ L KE SL R YEE L K L C L A +G +D L + +Q
Sbjct: 223 LESQIESL---KEELGSLSRNYEEDVKLLHKQLAGCELEQMD-APIGTGLDDILETIRIQ 278
Query: 149 SVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELK 189
E + R+E A Q +S + + L A L+
Sbjct: 279 -WERDVEKNRVEAGALLQAKQQAEVAHMSQTQEEKLAAALR 318
>gi|45597177 TBC1 domain family, member 9B (with GRAM domain)
isoform b [Homo sapiens]
Length = 1233
Score = 28.5 bits (62), Expect = 3.9
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 98 LPKEHAASLCRC--YEEKQSPLQKHLRVCSLRMNRLAG----------VGWRVDYTLSSS 145
+P E A + C YE + LQ L V M +L G +G +D ++
Sbjct: 679 MPFESAVVIVDCFFYEGIKVILQVALAVLDANMEQLLGCSDEGEAMTMLGRYLDNVVNK- 737
Query: 146 LLQSVEEPMVHLRLEVAAAPGTPAQP---VAMSLSADKFQVLLAE 187
QSV P+ HLR ++++ PA+ + +S +KF L AE
Sbjct: 738 --QSVSPPIPHLRALLSSSDDPPAEVDIFELLKVSYEKFSSLRAE 780
>gi|45597175 TBC1 domain family, member 9B (with GRAM domain)
isoform a [Homo sapiens]
Length = 1250
Score = 28.5 bits (62), Expect = 3.9
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 98 LPKEHAASLCRC--YEEKQSPLQKHLRVCSLRMNRLAG----------VGWRVDYTLSSS 145
+P E A + C YE + LQ L V M +L G +G +D ++
Sbjct: 679 MPFESAVVIVDCFFYEGIKVILQVALAVLDANMEQLLGCSDEGEAMTMLGRYLDNVVNK- 737
Query: 146 LLQSVEEPMVHLRLEVAAAPGTPAQP---VAMSLSADKFQVLLAE 187
QSV P+ HLR ++++ PA+ + +S +KF L AE
Sbjct: 738 --QSVSPPIPHLRALLSSSDDPPAEVDIFELLKVSYEKFSSLRAE 780
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 5.1
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 84 VDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLS 143
+D E+ +Q K+ A C+ EE+Q LQK L+ + + +
Sbjct: 13 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKYS----------- 61
Query: 144 SSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLMSS 197
+SV+E +LE A T A+ SL+ + Q++ EL +AQ +++
Sbjct: 62 ----ESVKE--AQEKLEQAEKKATDAEADVASLNR-RIQLVEEELDRAQERLAT 108
>gi|42476296 tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 5.1
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 84 VDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRMNRLAGVGWRVDYTLS 143
+D E+ +Q K+ A C+ EE+Q LQK L+ + + +
Sbjct: 13 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKYS----------- 61
Query: 144 SSLLQSVEEPMVHLRLEVAAAPGTPAQPVAMSLSADKFQVLLAELKQAQTLMSS 197
+SV+E +LE A T A+ SL+ + Q++ EL +AQ +++
Sbjct: 62 ----ESVKE--AQEKLEQAEKKATDAEADVASLNR-RIQLVEEELDRAQERLAT 108
>gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens]
Length = 3661
Score = 28.1 bits (61), Expect = 5.1
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 36/139 (25%)
Query: 14 WVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLS 73
W+ ++ S+ AK VKL LC+ T A G+ KA +V+
Sbjct: 235 WIFSKFSSSAK-DEVKLLYLCA-------------------TYKALETVGEKKAFSSVMQ 274
Query: 74 FILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYE--EKQSPLQKHLRVCSLRMNRL 131
+++S L S L+ + P+ LC+C + + H+ + R
Sbjct: 275 LVMTS----------LQSILENVDTPE----LLCKCVKCILLVARCYPHIFSTNFRDTVD 320
Query: 132 AGVGWRVDYTLSSSLLQSV 150
VGW +D+T SL Q V
Sbjct: 321 ILVGWHIDHTQKPSLTQQV 339
>gi|169216359 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 27.7 bits (60), Expect = 6.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 155 VHLRLEVAAAPGTPAQPVAMSLSADKFQVLL 185
V + L +AAPG PA P + SL A F +L
Sbjct: 134 VSIALGGSAAPGNPAAPASPSLGASVFPSML 164
>gi|169216600 PREDICTED: hypothetical protein [Homo sapiens]
Length = 225
Score = 27.7 bits (60), Expect = 6.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 155 VHLRLEVAAAPGTPAQPVAMSLSADKFQVLL 185
V + L +AAPG PA P + SL A F +L
Sbjct: 134 VSIALGGSAAPGNPAAPASPSLGASVFPSML 164
>gi|62241042 glutamyl-prolyl tRNA synthetase [Homo sapiens]
Length = 1512
Score = 27.3 bits (59), Expect = 8.8
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 5 FCGDLDCPDWV 15
FCG++DC DW+
Sbjct: 1447 FCGEIDCEDWI 1457
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 27.3 bits (59), Expect = 8.8
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 29 KLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDGES 88
KLR + S + K++ + EK+++ ++ E KA L FI+ K+S +
Sbjct: 190 KLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYS---DL 246
Query: 89 LSSELQQLGLPKEHAASLC 107
LS L Q + +S C
Sbjct: 247 LSQSLNQPLTSSKAGSSPC 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,716,229
Number of Sequences: 37866
Number of extensions: 255328
Number of successful extensions: 908
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 34
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.