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Search of human proteins with 211971067
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|211971067 heterogeneous nuclear ribonucleoprotein C-like
[Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 579 e-165
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 557 e-159
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 529 e-150
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 529 e-150
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 529 e-150
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 511 e-145
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 511 e-145
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 502 e-142
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 502 e-142
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 241 6e-64
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 241 6e-64
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 241 6e-64
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 241 6e-64
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 204 1e-52
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 184 1e-46
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 50 3e-06
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 50 3e-06
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 49 4e-06
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 49 4e-06
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 48 9e-06
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 48 9e-06
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 48 1e-05
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 48 1e-05
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 46 3e-05
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 46 4e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 46 4e-05
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 46 4e-05
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 46 4e-05
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 45 6e-05
gi|42476169 Paf1, RNA polymerase II associated factor, homolog [... 45 6e-05
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 579 bits (1492), Expect = e-165
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS
Sbjct: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 557 bits (1435), Expect = e-159
Identities = 282/293 (96%), Positives = 289/293 (98%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHS+NSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQV INLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
DGMYSFPARVPPPPPIALAVVPSKRQR+SGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGAEDSAEEGDPLDDD NEDQGD+QL LIK++EK+AEEGED+RDSTNGQDDS
Sbjct: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 529 bits (1363), Expect = e-150
Identities = 270/293 (92%), Positives = 277/293 (94%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHS+NSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQV INLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKE KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGA+DS EEGD L DDDNEDQGDNQL LIK++EK AEEGED+RD NGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 529 bits (1363), Expect = e-150
Identities = 270/293 (92%), Positives = 277/293 (94%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHS+NSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQV INLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKE KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGA+DS EEGD L DDDNEDQGDNQL LIK++EK AEEGED+RD NGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 529 bits (1363), Expect = e-150
Identities = 270/293 (92%), Positives = 277/293 (94%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNKMDPHS+NSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
KNARAAVAGEDGRMIASQV INLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY QRDYY
Sbjct: 61 KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIKQELTQIKQKVDSLLENLEKIEKE KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGA+DS EEGD L DDDNEDQGDNQL LIK++EK AEEGED+RD NGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 511 bits (1316), Expect = e-145
Identities = 259/293 (88%), Positives = 276/293 (94%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP S+NSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
+NARAAVAGEDGRMIA QV INLAAEPKVNRG AGVKRSAAEMYGSSFDLDY FQRDYY
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
D MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSSS+KKDET+VKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGA+DSAEEGD LDDDDNED+GD+QL LIK++EK+AEEGED+RDS NG+DDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 511 bits (1316), Expect = e-145
Identities = 259/293 (88%), Positives = 276/293 (94%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP S+NSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120
+NARAAVAGEDGRMIA QV INLAAEPKVNRG AGVKRSAAEMYGSSFDLDY FQRDYY
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
D MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180
Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240
QAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSSS+KKDET+VKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240
Query: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EGGA+DSAEEGD LDDDDNED+GD+QL LIK++EK+AEEGED+RDS NG+DDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 502 bits (1292), Expect = e-142
Identities = 259/306 (84%), Positives = 276/306 (90%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP S+NSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
+NARAAVAGEDGRMIA QV INLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 108 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
SFDLDY FQRDYYD MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS 227
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 228 SMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST 287
S+KKDET+VKMESEGGA+DSAEEGD LDDDDNED+GD+QL LIK++EK+AEEGED+RDS
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 288 NGQDDS 293
NG+DDS
Sbjct: 301 NGEDDS 306
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 502 bits (1292), Expect = e-142
Identities = 259/306 (84%), Positives = 276/306 (90%), Gaps = 13/306 (4%)
Query: 1 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
MASNVTNK DP S+NSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY E
Sbjct: 1 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60
Query: 61 KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
+NARAAVAGEDGRMIA QV INLAAEPKVNRG AGVKRSAAEMYGS
Sbjct: 61 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120
Query: 108 SFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
SFDLDY FQRDYYD MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180
Query: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS 227
GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKEQSKQ VE+KN KSEEEQSSS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240
Query: 228 SMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST 287
S+KKDET+VKMESEGGA+DSAEEGD LDDDDNED+GD+QL LIK++EK+AEEGED+RDS
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300
Query: 288 NGQDDS 293
NG+DDS
Sbjct: 301 NGEDDS 306
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 241 bits (615), Expect = 6e-64
Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q IN+A EPK R G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271
Q + + + +EGG + D E D +++D +ED G IK
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 241 bits (615), Expect = 6e-64
Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q IN+A EPK R G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271
Q + + + +EGG + D E D +++D +ED G IK
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 241 bits (615), Expect = 6e-64
Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 8 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67
Query: 63 ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q IN+A EPK R G KR + +Y G FD
Sbjct: 68 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271
Q + + + +EGG + D E D +++D +ED G IK
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 241 bits (615), Expect = 6e-64
Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)
Query: 3 SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY E++
Sbjct: 21 SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
Query: 63 ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
ARAAVAGE+ R+IA Q IN+A EPK R G KR + +Y G FD
Sbjct: 81 ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
Query: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
DY ++ D+Y+ ++ + RVPPPP AV+P KR R++ T+RRGK F+ K G R +
Sbjct: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223
S KLK D+LQ IK+ELTQIK K+DSLL LEKIEK+Q K E E + + EE
Sbjct: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
Query: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271
Q + + + +EGG + D E D +++D +ED G IK
Sbjct: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 204 bits (518), Expect = 1e-52
Identities = 130/303 (42%), Positives = 173/303 (57%), Gaps = 21/303 (6%)
Query: 2 ASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYGFQRDYY 120
+ARAAV GE+GR++A Q IN+A EPK +R G+KR+A+ +Y G FD DY ++ D+Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124
Query: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
D ++ + R+ P P VP KR R++ RR K+ F + SS KL
Sbjct: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182
Query: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETH 235
K +LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGG 242
Query: 236 VKMESEGGAED---------SAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDS 286
GG ++E G P + D GD + L+ ++E++ E +D D+
Sbjct: 243 GSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQDT-DA 300
Query: 287 TNG 289
+G
Sbjct: 301 DDG 303
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 184 bits (466), Expect = 1e-46
Identities = 128/302 (42%), Positives = 164/302 (54%), Gaps = 35/302 (11%)
Query: 2 ASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
Query: 62 NARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYYD 121
+ARAAV GE+GR++A Q IN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
Query: 122 GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
Query: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHV 236
+LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGG 227
Query: 237 KMESEGGAED---------SAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST 287
GG ++E G P + D GD + L+ ++E++ E +D D+
Sbjct: 228 SGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQDT-DAD 285
Query: 288 NG 289
+G
Sbjct: 286 DG 287
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 49.7 bits (117), Expect = 3e-06
Identities = 59/284 (20%), Positives = 112/284 (39%), Gaps = 45/284 (15%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
RV+IG L+ ++ DVE F YGKI + G+ FV++D ++A AV +G+ +
Sbjct: 3 RVYIGRLS-YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61
Query: 77 SQVAVINLAAEPK------VNRGNAGVKRSAAEMYGSSFDLDY----------------- 113
+ ++ A P+ R G +RS + YG +Y
Sbjct: 62 GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLK 121
Query: 114 GFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQR---------ISGNT---------SRR 155
+ R + Y+ + + V S +R ++G SRR
Sbjct: 122 DYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRR 181
Query: 156 GKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEV 215
+S S+S R S+S + ++ + + K + S + + K +S+ +
Sbjct: 182 RRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSR-SKSRSRSQSRS 240
Query: 216 KNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDN 259
++ K + S + +H +S ++D AEE + ++DN
Sbjct: 241 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE--KIQNNDN 282
Score = 28.1 bits (61), Expect = 9.6
Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 21/170 (12%)
Query: 145 RQRISGNTSRRGKSGFNSKSGKRGSSKS-------GKLKGDDLQAIKQELTQI------K 191
R R + S KS S+SG R SKS + K + ++ +E ++ K
Sbjct: 205 RSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGK 264
Query: 192 QKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEG 251
+ S + EKI+ + + + ++ + +S S + E V+ E G +
Sbjct: 265 SRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQE 324
Query: 252 DPLDDDDNEDQ---GDNQLHLIKNNEKDAEEG-----EDNRDSTNGQDDS 293
L + + G ++ KD +G E++R + + S
Sbjct: 325 KSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKS 374
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 49.7 bits (117), Expect = 3e-06
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 18/139 (12%)
Query: 11 PHSVNS-RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAG 69
P +N+ ++F+GN++ + ++ ++F + G++ C V K +AFV +KE +A+AA+A
Sbjct: 73 PRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131
Query: 70 EDGRMIASQVAVINLAAEPK-------VNRGNAGVKRSAAEM-------YGSSFDLDYGF 115
+G+ + + + L+ + + V G+ K A + + ++FD F
Sbjct: 132 LNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFDYQQAF 191
Query: 116 QRDYYDGMYSFPARVPPPP 134
G + AR P PP
Sbjct: 192 GNS--TGGFDGQARQPTPP 208
Score = 40.4 bits (93), Expect = 0.002
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
++F+GN++ ++ A+F+ YG + C+V K FAFV + A A+ G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61
Query: 77 SQVAVINLAAEPK 89
A++ + P+
Sbjct: 62 PGRALVVEMSRPR 74
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo
sapiens]
Length = 272
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
RVFIG LN ++ DVE F YG+I + +GF FV+++ ++A AV DG+ +
Sbjct: 5 RVFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63
Query: 77 SQ-VAVINLAAEPKVNRG 93
S+ V + + A + RG
Sbjct: 64 SERVTIEHARARSRGGRG 81
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo
sapiens]
Length = 272
Score = 49.3 bits (116), Expect = 4e-06
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
RVFIG LN ++ DVE F YG+I + +GF FV+++ ++A AV DG+ +
Sbjct: 5 RVFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63
Query: 77 SQ-VAVINLAAEPKVNRG 93
S+ V + + A + RG
Sbjct: 64 SERVTIEHARARSRGGRG 81
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 48.1 bits (113), Expect = 9e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIA------GCSVHK--GFAFVQYDKEKNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+I C +K GFAF+ +++ +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIASQVAVINLAAEPKVNRGNAG 96
+G+ + + + A +P G G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 48.1 bits (113), Expect = 9e-06
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIA------GCSVHK--GFAFVQYDKEKNARAAVA 68
+ FIG LNT KK+ +EA+F KYG+I C +K GFAF+ +++ +A+ A
Sbjct: 9 KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67
Query: 69 GEDGRMIASQVAVINLAAEPKVNRGNAG 96
+G+ + + + A +P G G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 47.8 bits (112), Expect = 1e-05
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEK-IEKEQSKQEVEV 215
K GF ++ S + ++G + + K+E + K D L K E + +K+ E
Sbjct: 473 KRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEE 532
Query: 216 KNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEK 275
E E+ S + DE + +SE G+E EE + L+ D +E+ + +LH N
Sbjct: 533 VGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEE-NGLEKDLDEEGSEKELH---ENVL 588
Query: 276 DAEEGEDNRDSTNGQDD 292
D E E++ +++ +DD
Sbjct: 589 DKELEENDSENSEFEDD 605
Score = 37.4 bits (85), Expect = 0.016
Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 143 SKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLE 202
S+++ + ++ + G + + G K +G + + + L + ++ DS E
Sbjct: 544 SEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFE 603
Query: 203 K------IEKEQSKQEVEVKNAKSEEEQSS--------SSMKKDETHVKMESEGGAEDSA 248
+++E S++E + + + EEE+ + S K+DE + + A+ A
Sbjct: 604 DDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKA 663
Query: 249 EEGDP-----LDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EEGD + DD ED+ + + +EK E+ + N + ++DS
Sbjct: 664 EEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDS 713
Score = 32.7 bits (73), Expect = 0.39
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 202 EKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSA-EEGDPLDDDDN- 259
EK E+E + ++V + +E++ + K E K EG A++ EE D +D+D
Sbjct: 626 EKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDEDAD 685
Query: 260 ----EDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDD 292
ED + +NEK +E ED+ + D
Sbjct: 686 GKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDDSD 722
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/102 (19%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 202 EKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGG----------AEDSAEEG 251
+K EK + E E +++ ++SS + +E + ESE G ++ +EEG
Sbjct: 429 KKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEG 488
Query: 252 DPL-DDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDD 292
+P+ +++ + +++ +KN+ ++ +++ D N + +
Sbjct: 489 NPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESE 530
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 47.8 bits (112), Expect = 1e-05
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 157 KSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEK-IEKEQSKQEVEV 215
K GF ++ S + ++G + + K+E + K D L K E + +K+ E
Sbjct: 473 KRGFEGSCSQKESEEGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESEEE 532
Query: 216 KNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEK 275
E E+ S + DE + +SE G+E EE + L+ D +E+ + +LH N
Sbjct: 533 VGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEE-NGLEKDLDEEGSEKELH---ENVL 588
Query: 276 DAEEGEDNRDSTNGQDD 292
D E E++ +++ +DD
Sbjct: 589 DKELEENDSENSEFEDD 605
Score = 37.4 bits (85), Expect = 0.016
Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 143 SKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLE 202
S+++ + ++ + G + + G K +G + + + L + ++ DS E
Sbjct: 544 SEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDSENSEFE 603
Query: 203 K------IEKEQSKQEVEVKNAKSEEEQSS--------SSMKKDETHVKMESEGGAEDSA 248
+++E S++E + + + EEE+ + S K+DE + + A+ A
Sbjct: 604 DDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKA 663
Query: 249 EEGDP-----LDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293
EEGD + DD ED+ + + +EK E+ + N + ++DS
Sbjct: 664 EEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDS 713
Score = 32.7 bits (73), Expect = 0.39
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 202 EKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSA-EEGDPLDDDDN- 259
EK E+E + ++V + +E++ + K E K EG A++ EE D +D+D
Sbjct: 626 EKEEEEDTYEKVFDDESDEKEDEEYADEKGLEAADKKAEEGDADEKLFEESDDKEDEDAD 685
Query: 260 ----EDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDD 292
ED + +NEK +E ED+ + D
Sbjct: 686 GKEVEDADEKLFEDDDSNEKLFDEEEDSSEKLFDDSD 722
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/102 (19%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
Query: 202 EKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGG----------AEDSAEEG 251
+K EK + E E +++ ++SS + +E + ESE G ++ +EEG
Sbjct: 429 KKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESEEG 488
Query: 252 DPL-DDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDD 292
+P+ +++ + +++ +KN+ ++ +++ D N + +
Sbjct: 489 NPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKESE 530
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 46.2 bits (108), Expect = 3e-05
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 141 VPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL-----------QAIKQELTQ 189
VP + + SG+ G + G ++S D + A+ ++Q
Sbjct: 48 VPVEPESDSGDEEEEGPIVLGRRQKALGKNRSADFNPDFVFTEKEGTYDGSWALADVMSQ 107
Query: 190 IKQK--VDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSS--SMKKDETHVKMESEGGAE 245
+K+K +L E +EK+ K++ ++ E K+ K E+E+ + S K++ ++ E G+E
Sbjct: 108 LKKKRAATTLDEKIEKVRKKRKTEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSE 167
Query: 246 DSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGED 282
D A E D D+N + L +K+ +K ++G++
Sbjct: 168 DEASETDYSSADENILTKADTLK-VKDRKKKKKKGQE 203
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
++FIG LNT +K+ +E +F KYG+I + K GFAFV ++ +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIASQVAVINLAAEPKVNRGNAG 96
+G+ + + + A +P RG G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
++FIG LNT +K+ +E +F KYG+I + K GFAFV ++ +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIASQVAVINLAAEPKVNRGNAG 96
+G+ + + + A +P RG G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 40/184 (21%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
++FIG LN +K+ +EA F KYG+I + K GFAFV ++ +A+AA
Sbjct: 9 KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 69 GEDGRMIASQVAVINLAAEP---------------------KVNRGNAGVKRSAAEMYGS 107
+G+ + + + A +P + RG G R + G
Sbjct: 68 DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127
Query: 108 SFDLDYGFQRDYYDGMYSFPARVPPPP----PIALAVVPSKRQRISGNTSR------RGK 157
D Y D P + PPP P PS R SG R RG+
Sbjct: 128 DDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGR 187
Query: 158 SGFN 161
G++
Sbjct: 188 DGYS 191
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 45.8 bits (107), Expect = 4e-05
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
++FIG LNT +K+ +EA+F KYG+I + K GFAFV ++ +A+ A
Sbjct: 9 KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 69 GEDGRMIASQVAVINLAAEPKVNRGNAG 96
+G+ + + + A +P G G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 45.4 bits (106), Expect = 6e-05
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 19/126 (15%)
Query: 169 SSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKI-EKEQSKQEVEVKNAKSEEEQSSS 227
++K+G+ K + A ++E+ ++K+ EN+E EK K+E K+EEE
Sbjct: 79 NAKNGEAKITEAPASEKEIVEVKE------ENIEDATEKGGEKKEAVAAEVKNEEEDQKE 132
Query: 228 SMKKDETHVKMESEGGAEDSAEEG--DPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRD 285
+E + + E G ED E+G D +D + ++G++ ++D ++GED +
Sbjct: 133 D---EEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGED-----AKEKEDGKKGEDGKG 184
Query: 286 STNGQD 291
NG+D
Sbjct: 185 --NGED 188
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 12/143 (8%)
Query: 150 GNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQS 209
G + K + GK K+G KG+D K+K D K E
Sbjct: 142 GEAGKEDKDEKGEEDGKE--DKNGNEKGEDA----------KEKEDGKKGEDGKGNGEDG 189
Query: 210 KQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHL 269
K++ E + + + +++ + ++ K + + G + +E + +D ED+G N+
Sbjct: 190 KEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEA 249
Query: 270 IKNNEKDAEEGEDNRDSTNGQDD 292
K E EE E + +DD
Sbjct: 250 GKEKEDLKEEEEGKEEDEIKEDD 272
Score = 38.1 bits (87), Expect = 0.009
Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 32/176 (18%)
Query: 116 QRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKL 175
+ DY + + A++ P +V K + I T K G++ + + ++
Sbjct: 73 EEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATE---------KGGEKKEAVAAEV 123
Query: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETH 235
K ++ + E Q ++K ++ E+ ++ +E K++ N K E+ + KK E
Sbjct: 124 KNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKN-GNEKGEDAKEKEDGKKGE-- 180
Query: 236 VKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQD 291
+ +G ED E+G+ D+ E E+D +E D +++ +G++
Sbjct: 181 ---DGKGNGEDGKEKGE----DEKE-------------EEDRKETGDGKENEDGKE 216
Score = 35.4 bits (80), Expect = 0.060
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 163 KSGKRGSSKSGKLKGD----DLQAIKQELTQIKQKV---DSLLENLEKIEKE------QS 209
K + SS+ K K D ++ Q + + KQ+ + EN + E +
Sbjct: 35 KPKRTSSSRKMKTKSDMMEENIDTSAQAVAETKQEAVVEEDYNENAKNGEAKITEAPASE 94
Query: 210 KQEVEVKNAKSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQLHL 269
K+ VEVK E+ KK+ ++++E ED E+ ++D NE++G+
Sbjct: 95 KEIVEVKEENIEDATEKGGEKKEAVAAEVKNE--EEDQKED----EEDQNEEKGEAGKE- 147
Query: 270 IKNNEKDAEEG-EDNRDSTNGQD 291
+EK E+G ED + G+D
Sbjct: 148 -DKDEKGEEDGKEDKNGNEKGED 169
Score = 35.0 bits (79), Expect = 0.078
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 151 NTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSK 210
N + +G+ + GK+G + GK G+D K+K + E ++ E K
Sbjct: 162 NGNEKGEDAKEKEDGKKG--EDGKGNGEDG----------KEKGEDEKEEEDRKETGDGK 209
Query: 211 QEVEVKNAKSEEEQSSSSMKKDETHVK--MESEGGAEDSAEEGDPLDDDDNEDQGDNQLH 268
+ + K ++E +K+DE + E EGG E+ E G +D E++G +
Sbjct: 210 ENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEE--EAGKEKEDLKEEEEGKEEDE 267
Query: 269 LIKNNEKDAE 278
+ +++ K E
Sbjct: 268 IKEDDGKKEE 277
>gi|42476169 Paf1, RNA polymerase II associated factor, homolog
[Homo sapiens]
Length = 531
Score = 45.4 bits (106), Expect = 6e-05
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Query: 152 TSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQ 211
+ RR K+G S + K + +L+A + Q LEN E E+E+ +
Sbjct: 333 SKRRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQ--------LENHEPEEEEEEEM 384
Query: 212 EVEVKNA--KSEEEQSSSSMKKDETHVKMESEGGAEDSAEEGDPLDDDDNEDQGDNQ--- 266
E E K A EE++ SS +K+ + + G+E EEGD + D G+++
Sbjct: 385 ETEEKEAGGSDEEQEKGSSSEKEGSE---DEHSGSESEREEGDRDEASDKSGSGEDESSE 441
Query: 267 --------LHLIKNNEKDAEEGEDNRDSTNGQ 290
I ++ D+E+ D+ D GQ
Sbjct: 442 DEARAARDKEEIFGSDADSEDDADSDDEDRGQ 473
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,329,074
Number of Sequences: 37866
Number of extensions: 548732
Number of successful extensions: 9163
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 709
Number of HSP's that attempted gapping in prelim test: 4610
Number of HSP's gapped (non-prelim): 3704
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.