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Search of human proteins with 19923613
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens]
(508 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|215598561 enhancer of mRNA decapping 3 [Homo sapiens] 1040 0.0
gi|215598545 enhancer of mRNA decapping 3 [Homo sapiens] 1040 0.0
gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens] 1040 0.0
gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens] 37 0.042
gi|91984773 apolipoprotein A-I binding protein precursor [Homo s... 35 0.16
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|50962882 G patch domain containing 8 [Homo sapiens] 33 0.80
gi|27894376 cell adhesion molecule with homology to L1CAM precur... 32 1.0
gi|189011568 adenomatous polyposis coli [Homo sapiens] 32 1.4
gi|189011566 adenomatous polyposis coli [Homo sapiens] 32 1.4
gi|53759122 adenomatous polyposis coli [Homo sapiens] 32 1.4
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 32 1.4
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 32 1.4
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 32 1.4
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 32 1.4
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 32 1.4
gi|7705971 leucine zipper protein 4 [Homo sapiens] 32 1.8
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 31 3.0
gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor ... 30 4.0
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor... 30 4.0
gi|55741677 SET domain containing 1A [Homo sapiens] 30 5.2
gi|151301096 trimethylguanosine synthase homolog [Homo sapiens] 30 5.2
gi|4503977 starch binding domain 1 [Homo sapiens] 30 6.8
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 6.8
gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo sap... 29 8.8
gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo sapi... 29 8.8
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa... 29 8.8
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa... 29 8.8
>gi|215598561 enhancer of mRNA decapping 3 [Homo sapiens]
Length = 508
Score = 1040 bits (2688), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 60
MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
Sbjct: 1 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 60
Query: 61 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 120
ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
Sbjct: 61 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 120
Query: 121 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 180
TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
Sbjct: 121 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 180
Query: 181 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 240
NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
Sbjct: 181 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 240
Query: 241 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 300
PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
Sbjct: 241 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 300
Query: 301 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 360
LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
Sbjct: 301 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 360
Query: 361 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 420
DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
Sbjct: 361 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 420
Query: 421 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 480
DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
Sbjct: 421 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 480
Query: 481 IPQQVFQEVGINYHSPFGCKFVIPLHSA 508
IPQQVFQEVGINYHSPFGCKFVIPLHSA
Sbjct: 481 IPQQVFQEVGINYHSPFGCKFVIPLHSA 508
>gi|215598545 enhancer of mRNA decapping 3 [Homo sapiens]
Length = 508
Score = 1040 bits (2688), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 60
MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
Sbjct: 1 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 60
Query: 61 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 120
ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
Sbjct: 61 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 120
Query: 121 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 180
TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
Sbjct: 121 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 180
Query: 181 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 240
NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
Sbjct: 181 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 240
Query: 241 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 300
PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
Sbjct: 241 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 300
Query: 301 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 360
LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
Sbjct: 301 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 360
Query: 361 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 420
DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
Sbjct: 361 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 420
Query: 421 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 480
DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
Sbjct: 421 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 480
Query: 481 IPQQVFQEVGINYHSPFGCKFVIPLHSA 508
IPQQVFQEVGINYHSPFGCKFVIPLHSA
Sbjct: 481 IPQQVFQEVGINYHSPFGCKFVIPLHSA 508
>gi|19923613 enhancer of mRNA decapping 3 [Homo sapiens]
Length = 508
Score = 1040 bits (2688), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 60
MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT
Sbjct: 1 MATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDIT 60
Query: 61 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 120
ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR
Sbjct: 61 ELKILEIPGPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKR 120
Query: 121 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 180
TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK
Sbjct: 121 TDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLK 180
Query: 181 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 240
NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER
Sbjct: 181 NGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRGIPNER 240
Query: 241 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 300
PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT
Sbjct: 241 PTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDSGLVVPSISYELHKKLLSVAEKHGLT 300
Query: 301 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 360
LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH
Sbjct: 301 LERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANH 360
Query: 361 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 420
DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR
Sbjct: 361 DVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDLVINCLDCPENVFLR 420
Query: 421 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 480
DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG
Sbjct: 421 DQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIG 480
Query: 481 IPQQVFQEVGINYHSPFGCKFVIPLHSA 508
IPQQVFQEVGINYHSPFGCKFVIPLHSA
Sbjct: 481 IPQQVFQEVGINYHSPFGCKFVIPLHSA 508
>gi|94400927 YjeF N-terminal domain containing 3 [Homo sapiens]
Length = 299
Score = 37.0 bits (84), Expect = 0.042
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 328 PKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITNELSLFSK 387
P ++ TV ++CGP GA G+ C RHL + + +F P + L+ + +L+ ++
Sbjct: 111 PALSRKQRTVLVVCGPEQNGAVGLVCARHLRVFEYEPTIFYP--TRSLDLLHRDLT--TQ 166
Query: 388 TQGQQVSSLKDLPT 401
+ + L LPT
Sbjct: 167 CEKMDIPFLSYLPT 180
>gi|91984773 apolipoprotein A-I binding protein precursor [Homo
sapiens]
Length = 288
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 296 KHGLTLERRLEMTGV-CASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCG 354
++ ++++ +E+ G+ CA+ +A +P PTV ++CGP G G+ C
Sbjct: 75 EYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSP------PTVLVICGPGNNGGDGLVCA 128
Query: 355 RHLANHDVQVILFLPNFVKMLESITNELSLFSKTQGQQVSSLKDLPTSPVDL 406
RHL + ++ P + +L ++ Q + L ++P P+ +
Sbjct: 129 RHLKLFGYEPTIYYPK----RPNKPLFTALVTQCQKMDIPFLGEMPAEPMTI 176
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 33.1 bits (74), Expect = 0.61
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 97 QNGTGKFVKKPASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFR 156
Q G KKP +++A P+R K+ AV Q+ +S + S+S S+
Sbjct: 195 QKAVGAGAKKPQKAAAAGTKTPRRRRQKAAKAAVWGQKAAAGESLTPNSLASVSFSRPMF 254
Query: 157 RRHNSWSS 164
RH +SS
Sbjct: 255 LRHYPFSS 262
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 32.7 bits (73), Expect = 0.80
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 69 GPGDNQHFGDLHQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKRTDVKSQDV 128
G H G H+ EL PS + G + SS S+ ++ P D S D
Sbjct: 775 GSSSQDHGGRKHKGELPPSSCQRRAGTKR-----------SSRSSHRSQPSSGDEDSDDA 823
Query: 129 AVSPQQQQCSKSYVDRHMESLSQSKSFR------RRHNSWSSSSRHPNQATPKKSGLK-N 181
+ Q+ Y + E S S+ R RRH+S SS R + ++ S
Sbjct: 824 SSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCY 883
Query: 182 GQMKNKDDECFGD 194
+ ++ D+ + D
Sbjct: 884 SRQRSYSDDSYSD 896
>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
[Homo sapiens]
Length = 1224
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 19 GVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTF-RAGDITELKILEIPGPGDNQHFG 77
G GR+ +D + TIS G+ C A DIT++ +L++P P +N H
Sbjct: 579 GTEDGRI-IIDGANLTISNVTLEDQGIYCCSAHTALDSAADITQVTVLDVPDPPENLHLS 637
Query: 78 D 78
+
Sbjct: 638 E 638
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 80 HQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSK 139
H S + ++ IN++GT K SSS + +RT S ++ S + + +K
Sbjct: 2526 HDIARSHSESPSRLPINRSGTWKREHSKHSSSLPRVSTWRRTGSSSSILSASSESSEKAK 2585
Query: 140 SYVDRHMESLSQSKSFRRRHNSWSSSSR--HPNQATPKKS 177
S ++H+ S+S +K + S + R N+ +P S
Sbjct: 2586 SEDEKHVNSISGTKQSKENQVSAKGTWRKIKENEFSPTNS 2625
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 80 HQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSK 139
H S + ++ IN++GT K SSS + +RT S ++ S + + +K
Sbjct: 2526 HDIARSHSESPSRLPINRSGTWKREHSKHSSSLPRVSTWRRTGSSSSILSASSESSEKAK 2585
Query: 140 SYVDRHMESLSQSKSFRRRHNSWSSSSR--HPNQATPKKS 177
S ++H+ S+S +K + S + R N+ +P S
Sbjct: 2586 SEDEKHVNSISGTKQSKENQVSAKGTWRKIKENEFSPTNS 2625
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 32.0 bits (71), Expect = 1.4
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 80 HQTELGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSK 139
H S + ++ IN++GT K SSS + +RT S ++ S + + +K
Sbjct: 2526 HDIARSHSESPSRLPINRSGTWKREHSKHSSSLPRVSTWRRTGSSSSILSASSESSEKAK 2585
Query: 140 SYVDRHMESLSQSKSFRRRHNSWSSSSR--HPNQATPKKS 177
S ++H+ S+S +K + S + R N+ +P S
Sbjct: 2586 SEDEKHVNSISGTKQSKENQVSAKGTWRKIKENEFSPTNS 2625
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 25/130 (19%)
Query: 62 LKILEIPGPGDNQHFGDLHQTE----LGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNI 117
LK L P GD+ L P G+ +V K + AS S P +
Sbjct: 821 LKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEV------PPKVPNREASLYSPPSTL 874
Query: 118 PKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKS 177
P+ + K DV +P M SL + + + + +SS RH A PK
Sbjct: 875 PRNSPTKRVDVPTTPGVP----------MTSLERQRGYHK-----NSSQRHSISAMPKNL 919
Query: 178 GLKNGQMKNK 187
NG + ++
Sbjct: 920 NSPNGVLLSR 929
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 25/130 (19%)
Query: 62 LKILEIPGPGDNQHFGDLHQTE----LGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNI 117
LK L P GD+ L P G+ +V K + AS S P +
Sbjct: 883 LKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEV------PPKVPNREASLYSPPSTL 936
Query: 118 PKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKS 177
P+ + K DV +P M SL + + + + +SS RH A PK
Sbjct: 937 PRNSPTKRVDVPTTPGVP----------MTSLERQRGYHK-----NSSQRHSISAMPKNL 981
Query: 178 GLKNGQMKNK 187
NG + ++
Sbjct: 982 NSPNGVLLSR 991
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 25/130 (19%)
Query: 62 LKILEIPGPGDNQHFGDLHQTE----LGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNI 117
LK L P GD+ L P G+ +V K + AS S P +
Sbjct: 827 LKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEV------PPKVPNREASLYSPPSTL 880
Query: 118 PKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKS 177
P+ + K DV +P M SL + + + + +SS RH A PK
Sbjct: 881 PRNSPTKRVDVPTTPGVP----------MTSLERQRGYHK-----NSSQRHSISAMPKNL 925
Query: 178 GLKNGQMKNK 187
NG + ++
Sbjct: 926 NSPNGVLLSR 935
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 25/130 (19%)
Query: 62 LKILEIPGPGDNQHFGDLHQTE----LGPSGAGCQVGINQNGTGKFVKKPASSSSAPQNI 117
LK L P GD+ L P G+ +V K + AS S P +
Sbjct: 808 LKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGSMSEV------PPKVPNREASLYSPPSTL 861
Query: 118 PKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKS 177
P+ + K DV +P M SL + + + + +SS RH A PK
Sbjct: 862 PRNSPTKRVDVPTTPGVP----------MTSLERQRGYHK-----NSSQRHSISAMPKNL 906
Query: 178 GLKNGQMKNK 187
NG + ++
Sbjct: 907 NSPNGVLLSR 916
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 32.0 bits (71), Expect = 1.4
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 105 KKPASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSS 164
K S SSA P+ T KS A + Q+ +KS + + S SKS + S
Sbjct: 64 KDSPSKSSAEAQTPEDTPNKSGAEAKT-QKDSSNKSGAEAKTQKGSTSKSGSEAQTTKDS 122
Query: 165 SSR-HPNQATPKKSGLKNG 182
+S+ HP TPK S K+G
Sbjct: 123 TSKSHPELQTPKDSTGKSG 141
>gi|7705971 leucine zipper protein 4 [Homo sapiens]
Length = 313
Score = 31.6 bits (70), Expect = 1.8
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 105 KKPASSSSAPQNIPKRTDVKSQDVAV-------------SPQQQQCSKSYVDRHMESLSQ 151
+K S P N P R V D+++ + +++ +++ + S Q
Sbjct: 5 RKLTLSEKVPPNHPSRKKVNFLDMSLDDIIIYKELEGTNAEEEKNKRQNHSKKESPSRQQ 64
Query: 152 SKSFRRRHN-------SWSSSSRHPNQATPKKSGLKNGQ 183
SK+ R RH S S H + + K SG K+GQ
Sbjct: 65 SKAHRHRHRRGYSRCRSNSEEGNHDKKPSQKPSGFKSGQ 103
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 30.8 bits (68), Expect = 3.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 436 RAPVLSIDPPVHEVEQGIDAKW 457
R+PV+SIDPP V+QG DA +
Sbjct: 3020 RSPVISIDPPSSTVQQGQDASF 3041
>gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 3 [Homo sapiens]
Length = 702
Score = 30.4 bits (67), Expect = 4.0
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 175 KKSGLKNGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTY-ERRSGTRS 233
KKSG + + +NK E G+ EI F + DKAA F + +RR G
Sbjct: 116 KKSGDRVKEKRNKTTEENGEKGTEI----FRASAVIPSKDKAAFFLSYEELLQRRLGKYE 171
Query: 234 RGI---PNERPTRYRHDENILESEPIVYRRIIVPHN 266
I P + R D NILES I ++ HN
Sbjct: 172 HSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHN 207
>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 1 [Homo sapiens]
Length = 956
Score = 30.4 bits (67), Expect = 4.0
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 175 KKSGLKNGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTY-ERRSGTRS 233
KKSG + + +NK E G+ EI F + DKAA F + +RR G
Sbjct: 116 KKSGDRVKEKRNKTTEENGEKGTEI----FRASAVIPSKDKAAFFLSYEELLQRRLGKYE 171
Query: 234 RGI---PNERPTRYRHDENILESEPIVYRRIIVPHN 266
I P + R D NILES I ++ HN
Sbjct: 172 HSISVRPQQLSGRLSVDVNILESAGIASLEVLPLHN 207
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/164 (23%), Positives = 56/164 (34%), Gaps = 19/164 (11%)
Query: 107 PASSSSAPQNIPKRTDVKSQDVAVSPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSS 166
P SS P T SQD A S S S+ R E+ S +F RRH S SS+S
Sbjct: 265 PQSSQGTPYTSRGSTPY-SQDSAYS--SSTTSTSFKPRRSEN-SYQDAFSRRHFSASSAS 320
Query: 167 RHPNQA------TPKKSGLKNGQMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFE 220
+ A S + + + + +D ++ A +E
Sbjct: 321 TTASTAIAATTAATASSSASSSSLSSSSSSSSSSSSSQFRSSDANYP---------AYYE 371
Query: 221 EIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVP 264
+ Y+R + R E P EN E P Y + P
Sbjct: 372 SWNRYQRHTSYPPRRATREEPPGAPFAENTAERFPPSYTSYLPP 415
>gi|151301096 trimethylguanosine synthase homolog [Homo sapiens]
Length = 853
Score = 30.0 bits (66), Expect = 5.2
Identities = 46/168 (27%), Positives = 63/168 (37%), Gaps = 39/168 (23%)
Query: 135 QQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKN-GQMKNKD----- 188
QQ S+ R + QS+ N S+SS + N P + K+ G +KD
Sbjct: 346 QQLSEVSSKRECPASGQSEPRNGGTNEESNSSGNTNTDPPAEDSQKSSGANTSKDRPHAS 405
Query: 189 ----DECFGD---------------DIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRS 229
DE D DI+E P +DFD G+L F + S
Sbjct: 406 GTDGDESEEDPPEHKPSKLKRSHELDIDENPASDFDDSGSLLGF------------KYGS 453
Query: 230 GTRSRGIPN--ERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCTDS 275
G + GIPN R RY L+S+ + RR I N F +S
Sbjct: 454 GQKYGGIPNFSHRQVRYLEKNVKLKSKYLDMRRQIKMKNKHIFFTKES 501
>gi|4503977 starch binding domain 1 [Homo sapiens]
Length = 358
Score = 29.6 bits (65), Expect = 6.8
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 20/148 (13%)
Query: 69 GPGDNQHFGDLHQTELGPSGAGCQVGINQNGTG---------KFVKKPASSSSAPQNIPK 119
GPGD GD Q + P G G +Q+G+ + V KP + ++
Sbjct: 26 GPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNGHLIS 85
Query: 120 RTDVKSQDVAVSPQQQQCSKSYVDRHMESL---------SQSKSFRRRHNSWSSSSRHPN 170
+T + A S + Q S+ D E + + + S S+S SR+ +
Sbjct: 86 KTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQFPDTEAPATSETSNSRSYSEVSRNES 145
Query: 171 QATPK-KSGLKNGQ-MKNKDDECFGDDI 196
+P + G + GQ + K CF + +
Sbjct: 146 LESPMGEWGFQKGQEISAKAATCFAEKL 173
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 29.6 bits (65), Expect = 6.8
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 124 KSQDVAVSPQQQQCSKSYVDRH-----MESLSQSKSFRRRHNSWSS---SSRHPNQATPK 175
+S A P++ + S+S D+ +S+ Q + +RR++ SS SS PK
Sbjct: 449 ESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPK 508
Query: 176 KSGLKNGQM 184
+S +KNG++
Sbjct: 509 RSHVKNGEV 517
>gi|14165392 protocadherin alpha 12 isoform 2 precursor [Homo
sapiens]
Length = 792
Score = 29.3 bits (64), Expect = 8.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 401 TSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLA 460
T V + I LD +N D+P YK ++ QN V+ ++ + ++G++ + S
Sbjct: 223 TGSVQIQITVLDVNDNGPAFDKPSYKVVLSENVQNDTRVIQLN--ASDPDEGLNGEISYG 280
Query: 461 LGLPLPLGE 469
+ + LP+ E
Sbjct: 281 IKMILPVSE 289
>gi|9256578 protocadherin alpha 12 isoform 1 precursor [Homo
sapiens]
Length = 941
Score = 29.3 bits (64), Expect = 8.8
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 401 TSPVDLVINCLDCPENVFLRDQPWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLA 460
T V + I LD +N D+P YK ++ QN V+ ++ + ++G++ + S
Sbjct: 223 TGSVQIQITVLDVNDNGPAFDKPSYKVVLSENVQNDTRVIQLN--ASDPDEGLNGEISYG 280
Query: 461 LGLPLPLGE 469
+ + LP+ E
Sbjct: 281 IKMILPVSE 289
>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
sapiens]
Length = 351
Score = 29.3 bits (64), Expect = 8.8
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 424 WYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIGIPQ 483
+Y A++ + +++ A +L I ++++ GID S+ + PL AG IG P
Sbjct: 212 YYGASLMFTSKSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSPP 271
Query: 484 QVFQEVG-INYHSP 496
++G ++ HSP
Sbjct: 272 VPENDIGKLHAHSP 285
>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
sapiens]
Length = 334
Score = 29.3 bits (64), Expect = 8.8
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 424 WYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRIYLCDIGIPQ 483
+Y A++ + +++ A +L I ++++ GID S+ + PL AG IG P
Sbjct: 212 YYGASLMFTSKSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSPP 271
Query: 484 QVFQEVG-INYHSP 496
++G ++ HSP
Sbjct: 272 VPENDIGKLHAHSP 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,430,929
Number of Sequences: 37866
Number of extensions: 1051939
Number of successful extensions: 2663
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2647
Number of HSP's gapped (non-prelim): 36
length of query: 508
length of database: 18,247,518
effective HSP length: 107
effective length of query: 401
effective length of database: 14,195,856
effective search space: 5692538256
effective search space used: 5692538256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.