Guide to the Human Genome
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Name: CYB561D1 Sequence: fasta or formatted (133aa) NCBI GI: 197304731
Description:

cytochrome b-561 domain containing 1 isoform 4

Referenced in:

Iron, Copper, and Arsenic Metabolism

Other entries for this name:
alt prot [251aa] cytochrome b-561 domain containing 1 isoform 1
alt prot [172aa] cytochrome b-561 domain containing 1 isoform 3
alt prot [128aa] cytochrome b-561 domain containing 1 isoform 5
alt prot [229aa] cytochrome b-561 domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         12           1
 C cysteine            0.8          1           1
 D aspartate           1.5          2           1
 E glutamate           6.0          8           1
 F phenylalanine       2.3          3           1
 G glycine            12.0         16           2
 H histidine           2.3          3           1
 I isoleucine          2.3          3           1
 K lysine              2.3          3           1
 L leucine            11.3         15           1
 M methionine          2.3          3           1
 N asparagine          0.8          1           1
 P proline            10.5         14           1
 Q glutamine           1.5          2           1
 R arginine            7.5         10           2
 S serine             12.0         16           3
 T threonine           6.0          8           1
 V valine              3.8          5           1
 W tryptophan          4.5          6           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome b-561 domain containing 1 isoform 4 [Hom... 
CYB561D1              0.706   cytochrome b-561 domain containing 1 isoform 5 [Hom...
CYB561D1              0.584   cytochrome b-561 domain containing 1 isoform 1 [Hom...
CYB561D1              0.298   cytochrome b-561 domain containing 1 isoform 2 [Homo...
TCTN1                 0.082   tectonic family member 1 isoform 3 
C8orf44               0.078   hypothetical protein LOC56260 
CYB561D2              0.075   cytochrome b-561 domain containing 2 
LOC391359             0.047   PREDICTED: similar to hCG1784039 
LOC360030             0.047   homeobox C14 
LOC100293561          0.039   PREDICTED: similar to Protein MOST-1 
LOC100294457          0.031   PREDICTED: similar to hCG2038988 
MSGN1                 0.027   mesogenin 1 
LOC100133899          0.020   PREDICTED: hypothetical protein 
LOC100290382          0.020   PREDICTED: hypothetical protein XP_002347011 
LOC100289617          0.020   PREDICTED: hypothetical protein XP_002342956 
ZNF91                 0.016   zinc finger protein 91 
LOC100287677          0.012   PREDICTED: hypothetical protein XP_002343107 
SORBS1                0.012   sorbin and SH3 domain containing 1 isoform 4 
SORBS1                0.012   sorbin and SH3 domain containing 1 isoform 3 
SORBS1                0.012   sorbin and SH3 domain containing 1 isoform 2 
TULP1                 0.012   tubby like protein 1 
C6orf103              0.012   hypothetical protein LOC79747 
CCDC13                0.012   coiled-coil domain containing 13 
ATPGD1                0.012   ATP-grasp domain containing 1 
FUT10                 0.008   fucosyltransferase 10 
MIA                   0.008   melanoma inhibitory activity 
LOC731605             0.008   PREDICTED: similar to BCL2-associated transcription...
LOC100292973          0.008   PREDICTED: hypothetical protein 
LOC731605             0.008   PREDICTED: similar to BCL2-associated transcription...
LOC100289540          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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