Guide to the Human Genome
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Name: LOC100290382 Sequence: fasta or formatted (149aa) NCBI GI: 239752508
Description:

PREDICTED: hypothetical protein XP_002347011

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         10           2
 C cysteine            0.7          1           1
 D aspartate           1.3          2           1
 E glutamate           7.4         11           1
 F phenylalanine       0.7          1           1
 G glycine             6.0          9           2
 H histidine           4.7          7           1
 I isoleucine          3.4          5           1
 K lysine              7.4         11           2
 L leucine             8.1         12           2
 M methionine          4.7          7           1
 N asparagine          2.7          4           1
 P proline             6.7         10           1
 Q glutamine          10.1         15           2
 R arginine            5.4          8           1
 S serine             12.1         18           2
 T threonine           4.7          7           1
 V valine              2.7          4           1
 W tryptophan          4.0          6           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347011 
LOC100133899          1.000   PREDICTED: hypothetical protein 
LOC100289617          1.000   PREDICTED: hypothetical protein XP_002342956 
DLEC1                 0.042   deleted in lung and esophageal cancer 1 isoform DLEC...
DLEC1                 0.042   deleted in lung and esophageal cancer 1 isoform DLEC...
MUC16                 0.028   mucin 16 
RAF1                  0.025   v-raf-1 murine leukemia viral oncogene homolog 1 [Hom...
CHEK2                 0.021   protein kinase CHK2 isoform c 
CHEK2                 0.021   protein kinase CHK2 isoform b 
CHEK2                 0.021   protein kinase CHK2 isoform a 
MEIS1                 0.018   Meis homeobox 1 
CYB561D1              0.018   cytochrome b-561 domain containing 1 isoform 5 [Hom...
CYB561D1              0.018   cytochrome b-561 domain containing 1 isoform 4 [Hom...
CYB561D1              0.018   cytochrome b-561 domain containing 1 isoform 1 [Hom...
KIAA0753              0.014   hypothetical protein LOC9851 
TAOK3                 0.011   TAO kinase 3 
RILPL1                0.011   Rab interacting lysosomal protein-like 1 
TOX3                  0.011   TOX high mobility group box family member 3 isoform...
TOX3                  0.011   TOX high mobility group box family member 3 isoform...
KRT8                  0.011   keratin 8 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.011   GRB10 interacting GYF protein 2 isoform b 
MLLT4                 0.007   myeloid/lymphoid or mixed-lineage leukemia (trithora...
BRD4                  0.007   bromodomain-containing protein 4 isoform long 
CENPF                 0.007   centromere protein F 
TRERF1                0.007   transcriptional regulating factor 1 
CARD14                0.007   caspase recruitment domain protein 14 isoform 1 [Hom...
LAMA1                 0.007   laminin, alpha 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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