Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292973 Sequence: fasta or formatted (133aa) NCBI GI: 239755418
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         14           3
 C cysteine            6.0          8           2
 D aspartate           3.0          4           2
 E glutamate           4.5          6           1
 F phenylalanine       1.5          2           1
 G glycine            14.3         19           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              3.8          5           1
 L leucine             8.3         11           2
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline            12.8         17           2
 Q glutamine           1.5          2           1
 R arginine            6.8          9           1
 S serine              8.3         11           2
 T threonine           6.0          8           1
 V valine              4.5          6           1
 W tryptophan          4.5          6           1
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289540          1.000   PREDICTED: hypothetical protein 
LOC100289540          1.000   PREDICTED: hypothetical protein XP_002343072 
FGFR1                 0.030   fibroblast growth factor receptor 1 isoform 9 precur...
FGFR1                 0.030   fibroblast growth factor receptor 1 isoform 5 precur...
FGFR1                 0.030   fibroblast growth factor receptor 1 isoform 3 precur...
FGFR1                 0.030   fibroblast growth factor receptor 1 isoform 1 precu...
KCP                   0.026   cysteine rich BMP regulator 2 isoform 1 
LOC100292541          0.026   PREDICTED: hypothetical protein 
MAGED1                0.026   melanoma antigen family D, 1 isoform a 
MAGED1                0.026   melanoma antigen family D, 1 isoform b 
MAGED1                0.026   melanoma antigen family D, 1 isoform b 
FGFR1                 0.022   fibroblast growth factor receptor 1 isoform 6 precur...
FGFR1                 0.022   fibroblast growth factor receptor 1 isoform 4 precur...
FGFR1                 0.022   fibroblast growth factor receptor 1 isoform 2 precur...
LOC100293194          0.022   PREDICTED: hypothetical protein 
HMHA1                 0.022   minor histocompatibility antigen HA-1 
DGKK                  0.018   diacylglycerol kinase kappa 
LOC100293456          0.018   PREDICTED: hypothetical protein 
LOC100287108          0.018   PREDICTED: hypothetical protein 
LOC100287108          0.018   PREDICTED: hypothetical protein XP_002342658 
LOC100294499          0.018   PREDICTED: hypothetical protein 
LOC100294290          0.018   PREDICTED: hypothetical protein XP_002344064 
LOC100294201          0.018   PREDICTED: hypothetical protein 
LOC100294172          0.018   PREDICTED: hypothetical protein 
LOC100294122          0.018   PREDICTED: hypothetical protein 
BAT2                  0.018   HLA-B associated transcript-2 
SYVN1                 0.018   synoviolin 1 isoform b 
SHANK3                0.018   SH3 and multiple ankyrin repeat domains 3 
YAP1                  0.018   Yes-associated protein 1, 65kDa isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press