Guide to the Human Genome
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Name: SPTAN1 Sequence: fasta or formatted (2477aa) NCBI GI: 194595509
Description:

spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) isoform 1

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [2472aa] spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1        249           3
 C cysteine            0.6         14           1
 D aspartate           7.2        178           2
 E glutamate          11.4        282           4
 F phenylalanine       3.4         85           2
 G glycine             3.8         95           1
 H histidine           2.9         71           2
 I isoleucine          3.6         90           2
 K lysine              8.0        199           3
 L leucine            11.0        272           3
 M methionine          2.0         50           2
 N asparagine          3.9         96           2
 P proline             1.1         28           1
 Q glutamine           7.8        192           4
 R arginine            6.0        149           3
 S serine              6.1        151           2
 T threonine           3.6         89           2
 V valine              4.3        106           2
 W tryptophan          1.6         40           2
 Y tyrosine            1.7         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 
SPTAN1                0.997   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTA1                 0.549   spectrin, alpha, erythrocytic 1 
SPTBN5                0.126   spectrin, beta, non-erythrocytic 5 
SPTBN1                0.121   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.121   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTB                  0.112   spectrin beta isoform a 
SPTB                  0.112   spectrin beta isoform b 
SPTBN2                0.110   spectrin, beta, non-erythrocytic 2 
SPTBN4                0.084   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
ACTN4                 0.055   actinin, alpha 4 
ACTN1                 0.054   actinin, alpha 1 isoform b 
ACTN2                 0.053   actinin, alpha 2 
ACTN1                 0.053   actinin, alpha 1 isoform a 
DST                   0.052   dystonin isoform 4 
DST                   0.052   dystonin isoform 3 
DST                   0.052   dystonin isoform 2 
DST                   0.052   dystonin isoform 1 
DST                   0.052   dystonin isoform 1eA precursor 
ACTN1                 0.052   actinin, alpha 1 isoform c 
ACTN3                 0.049   actinin, alpha 3 
MACF1                 0.048   microfilament and actin filament cross-linker protei...
MACF1                 0.048   microfilament and actin filament cross-linker protei...
SPTBN4                0.037   spectrin, beta, non-erythrocytic 4 isoform sigma5 [...
DMD                   0.033   dystrophin Dp427c isoform 
DMD                   0.033   dystrophin Dp427p2 isoform 
DMD                   0.033   dystrophin Dp427p1 isoform 
DMD                   0.033   dystrophin Dp427l isoform 
DMD                   0.033   dystrophin Dp427m isoform 
SYNE1                 0.030   spectrin repeat containing, nuclear envelope 1 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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