Guide to the Human Genome
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Name: PCBP3 Sequence: fasta or formatted (371aa) NCBI GI: 194306631
Description:

poly(rC) binding protein 3 isoform 1

Referenced in:

hnRNP

Other entries for this name:
alt prot [345aa] poly(rC) binding protein 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         29           1
 C cysteine            1.3          5           1
 D aspartate           2.2          8           1
 E glutamate           6.2         23           2
 F phenylalanine       2.2          8           1
 G glycine             9.4         35           2
 H histidine           2.2          8           2
 I isoleucine          9.2         34           2
 K lysine              5.1         19           2
 L leucine             7.0         26           2
 M methionine          3.2         12           1
 N asparagine          3.5         13           1
 P proline             8.1         30           2
 Q glutamine           5.9         22           2
 R arginine            3.8         14           2
 S serine              8.6         32           2
 T threonine           8.1         30           1
 V valine              4.6         17           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 3 isoform 1 
PCBP3                 0.899   poly(rC) binding protein 3 isoform 2 
PCBP2                 0.672   poly(rC) binding protein 2 isoform c 
PCBP2                 0.665   poly(rC) binding protein 2 isoform g 
PCBP2                 0.665   poly(rC) binding protein 2 isoform f 
PCBP2                 0.650   poly(rC) binding protein 2 isoform b 
PCBP2                 0.647   poly(rC) binding protein 2 isoform e 
PCBP2                 0.641   poly(rC) binding protein 2 isoform a 
PCBP2                 0.639   poly(rC) binding protein 2 isoform d 
PCBP1                 0.560   poly(rC) binding protein 1 
PCBP4                 0.498   poly(rC) binding protein 4 isoform c 
PCBP4                 0.498   poly(rC) binding protein 4 isoform c 
PCBP4                 0.377   poly(rC) binding protein 4 isoform a 
HNRNPK                0.114   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.114   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.114   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA2                 0.097   neuro-oncological ventral antigen 2 
FUBP3                 0.089   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP2               0.086   insulin-like growth factor 2 mRNA binding protein 2 ...
NOVA1                 0.084   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.084   neuro-oncological ventral antigen 1 isoform 2 
KHSRP                 0.084   KH-type splicing regulatory protein 
FUBP1                 0.080   far upstream element-binding protein 
IGF2BP2               0.073   insulin-like growth factor 2 mRNA binding protein 2 ...
IGF2BP3               0.072   insulin-like growth factor 2 mRNA binding protein 3 ...
IGF2BP1               0.069   insulin-like growth factor 2 mRNA binding protein 1 ...
IGF2BP1               0.066   insulin-like growth factor 2 mRNA binding protein 1...
TDRKH                 0.046   tudor and KH domain containing isoform a 
TDRKH                 0.046   tudor and KH domain containing isoform a 
TDRKH                 0.046   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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