Guide to the Human Genome
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Name: PCBP4 Sequence: fasta or formatted (424aa) NCBI GI: 9966803
Description:

poly(rC) binding protein 4 isoform a

Referenced in:

hnRNP

Other entries for this name:
alt prot [403aa] poly(rC) binding protein 4 isoform c
alt prot [403aa] poly(rC) binding protein 4 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         46           3
 C cysteine            2.1          9           1
 D aspartate           1.7          7           1
 E glutamate           4.5         19           1
 F phenylalanine       2.4         10           1
 G glycine             9.7         41           2
 H histidine           1.7          7           1
 I isoleucine          6.6         28           2
 K lysine              3.5         15           2
 L leucine             9.4         40           2
 M methionine          1.2          5           1
 N asparagine          1.9          8           1
 P proline            10.8         46           3
 Q glutamine           5.0         21           2
 R arginine            3.8         16           1
 S serine              9.2         39           2
 T threonine           6.6         28           2
 V valine              6.8         29           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly(rC) binding protein 4 isoform a 
PCBP4                 0.791   poly(rC) binding protein 4 isoform c 
PCBP4                 0.791   poly(rC) binding protein 4 isoform c 
PCBP3                 0.327   poly(rC) binding protein 3 isoform 1 
PCBP2                 0.319   poly(rC) binding protein 2 isoform g 
PCBP2                 0.315   poly(rC) binding protein 2 isoform c 
PCBP2                 0.308   poly(rC) binding protein 2 isoform f 
PCBP2                 0.294   poly(rC) binding protein 2 isoform e 
PCBP2                 0.294   poly(rC) binding protein 2 isoform b 
PCBP2                 0.288   poly(rC) binding protein 2 isoform d 
PCBP2                 0.288   poly(rC) binding protein 2 isoform a 
PCBP3                 0.276   poly(rC) binding protein 3 isoform 2 
PCBP1                 0.260   poly(rC) binding protein 1 
HNRNPK                0.042   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.042   heterogeneous nuclear ribonucleoprotein K isoform b ...
HNRNPK                0.042   heterogeneous nuclear ribonucleoprotein K isoform a ...
NOVA1                 0.040   neuro-oncological ventral antigen 1 isoform 1 
NOVA1                 0.040   neuro-oncological ventral antigen 1 isoform 2 
NOVA2                 0.039   neuro-oncological ventral antigen 2 
KHSRP                 0.039   KH-type splicing regulatory protein 
FUBP1                 0.039   far upstream element-binding protein 
FUBP3                 0.038   far upstream element (FUSE) binding protein 3 [Homo...
ANKRD17               0.033   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.033   ankyrin repeat domain protein 17 isoform b 
ANKHD1                0.028   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.028   ANKHD1-EIF4EBP3 protein 
CIC                   0.024   capicua homolog 
EFS                   0.023   embryonal Fyn-associated substrate isoform 2 
EFS                   0.023   embryonal Fyn-associated substrate isoform 1 
TDRKH                 0.023   tudor and KH domain containing isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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