Guide to the Human Genome
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Name: LOC730474 Sequence: fasta or formatted (194aa) NCBI GI: 113417084
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {214aa} PREDICTED: hypothetical protein, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.1          4           1
 C cysteine            0.5          1           1
 D aspartate           1.0          2           1
 E glutamate           1.0          2           1
 F phenylalanine       1.0          2           1
 G glycine             1.5          3           1
 H histidine           1.0          2           1
 I isoleucine         11.3         22           1
 K lysine              1.0          2           1
 L leucine             4.6          9           3
 M methionine          0.5          1           1
 N asparagine          2.1          4           1
 P proline             1.5          3           1
 Q glutamine           1.5          3           1
 R arginine            1.5          3           2
 S serine              4.1          8           2
 T threonine          60.3        117          15
 V valine              0.5          1           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730474             0.832   PREDICTED: hypothetical protein, partial 
LOC100294470          0.315   PREDICTED: hypothetical protein, partial 
MUC2                  0.298   mucin 2 precursor 
LOC100294420          0.290   PREDICTED: similar to mucin 2 
LOC100131251          0.233   PREDICTED: hypothetical protein 
LOC100131251          0.233   PREDICTED: hypothetical protein 
LOC729792             0.216   PREDICTED: hypothetical protein 
LOC729792             0.216   PREDICTED: hypothetical protein 
LOC729792             0.216   PREDICTED: hypothetical protein 
LOC100294501          0.216   PREDICTED: hypothetical protein 
LOC100294249          0.216   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.216   PREDICTED: hypothetical protein 
LOC100294204          0.216   PREDICTED: hypothetical protein 
LOC100294136          0.216   PREDICTED: hypothetical protein 
LOC100294091          0.216   PREDICTED: hypothetical protein 
LOC730401             0.216   PREDICTED: hypothetical protein 
MUC5B                 0.216   mucin 5, subtype B, tracheobronchial 
MUC5AC                0.210   mucin 5AC 
LOC100131514          0.207   PREDICTED: similar to hCG1747327, partial 
LOC100133790          0.202   PREDICTED: intestinal mucin-like, partial 
LOC100131514          0.202   PREDICTED: similar to intestinal mucin MUC3B 
MUC3A                 0.202   PREDICTED: mucin 3A, intestinal 
LOC732156             0.202   PREDICTED: similar to Mucin-3A 
MUC3A                 0.196   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100132635          0.196   PREDICTED: similar to mucin 5, partial 
LOC100294236          0.182   PREDICTED: similar to diffuse panbronchiolitis crit...
LOC100134147          0.168   PREDICTED: hypothetical protein 
HAVCR1                0.168   hepatitis A virus cellular receptor 1 
HAVCR1                0.168   hepatitis A virus cellular receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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