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Search of human proteins with 113413437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 671 0.0
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 667 0.0
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 667 0.0
gi|148536848 carboxyl ester lipase precursor [Homo sapiens] 60 3e-09
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 58 1e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 55 1e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 54 2e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 53 3e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 5e-07
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 52 5e-07
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 51 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 2e-06
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 50 2e-06
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 50 2e-06
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 50 3e-06
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 50 4e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 50 4e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 50 4e-06
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 49 6e-06
gi|41281612 zinc finger protein 828 [Homo sapiens] 49 6e-06
gi|18079216 CASK interacting protein 1 [Homo sapiens] 49 8e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 1e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 48 1e-05
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 48 1e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 48 1e-05
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 48 1e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 47 2e-05
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 671 bits (1730), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP 60
MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP
Sbjct: 1 MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP 60
Query: 61 SSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP 120
SSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP
Sbjct: 61 SSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP 120
Query: 121 YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR 180
YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR
Sbjct: 121 YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR 180
Query: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE
Sbjct: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
Query: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES 300
ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES
Sbjct: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES 300
Query: 301 LSLSSKRGEDHIFILETKKCSQGR 324
LSLSSKRGEDHIFILETKKCSQGR
Sbjct: 301 LSLSSKRGEDHIFILETKKCSQGR 324
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 667 bits (1722), Expect = 0.0
Identities = 323/324 (99%), Positives = 323/324 (99%)
Query: 1 MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP 60
MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP
Sbjct: 1 MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP 60
Query: 61 SSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP 120
SSQSRRLPS LTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP
Sbjct: 61 SSQSRRLPSRLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP 120
Query: 121 YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR 180
YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR
Sbjct: 121 YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR 180
Query: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE
Sbjct: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
Query: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES 300
ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES
Sbjct: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES 300
Query: 301 LSLSSKRGEDHIFILETKKCSQGR 324
LSLSSKRGEDHIFILETKKCSQGR
Sbjct: 301 LSLSSKRGEDHIFILETKKCSQGR 324
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 667 bits (1722), Expect = 0.0
Identities = 323/324 (99%), Positives = 323/324 (99%)
Query: 1 MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP 60
MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP
Sbjct: 1 MLNDRISIIVEKQSLILGRRKEKKGTHLEESHESHFEASRKSALKVVDLVSGAALPTSSP 60
Query: 61 SSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP 120
SSQSRRLPS LTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP
Sbjct: 61 SSQSRRLPSRLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAAP 120
Query: 121 YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR 180
YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR
Sbjct: 121 YIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGAR 180
Query: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE
Sbjct: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
Query: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES 300
ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES
Sbjct: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWTRKLGCRCYCSPLGSGES 300
Query: 301 LSLSSKRGEDHIFILETKKCSQGR 324
LSLSSKRGEDHIFILETKKCSQGR
Sbjct: 301 LSLSSKRGEDHIFILETKKCSQGR 324
>gi|148536848 carboxyl ester lipase precursor [Homo sapiens]
Length = 756
Score = 59.7 bits (143), Expect = 3e-09
Identities = 46/144 (31%), Positives = 58/144 (40%), Gaps = 8/144 (5%)
Query: 132 GDFGPKGIGMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
GD G + G G P +PP G + P P P G G P GA
Sbjct: 600 GDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGAPPVPPTGDSGA 659
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTT 249
V PTG +GAPP PP G P P +G P PP+ +GAP + P +
Sbjct: 660 PPVPPTG--DSGAPP---VPPTGDAGPPPVPPTGDSGAPPVPPTGDSGAP-PVTPTGDSE 713
Query: 250 RAPAPLTLSFSARGLAWAGESPAS 273
AP P T A + G+S A+
Sbjct: 714 TAPVPPTGDSGAPPVPPTGDSEAA 737
Score = 40.0 bits (92), Expect = 0.003
Identities = 39/132 (29%), Positives = 47/132 (35%), Gaps = 23/132 (17%)
Query: 132 GDFGPKGIGMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
GD G + G G P +PP G + P P G G P GA
Sbjct: 644 GDSGAPPVPPTGDSGAPPVPPTGDSGAPPVP-----------PTGDAGPPPVPPTGDSGA 692
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEA--LRPPAS 247
V PTG +GAPP P G P +G PP PP G EA + P
Sbjct: 693 PPVPPTG--DSGAPP---VTPTGDSETAPVPPTGDS---GAPPVPPTGDSEAAPVPPTDD 744
Query: 248 TTRAPAPLTLSF 259
+ A P + F
Sbjct: 745 SKEAQMPAVIRF 756
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 57.8 bits (138), Expect = 1e-08
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
Query: 136 PKGIGMKGGGP--GLPPR-GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV 192
P+G +GG G PPR GK GP Q + P RP G + G + QG
Sbjct: 183 PEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPH 242
Query: 193 G--PTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
P GP P +R PPPG RP P G P +P PPAG P+ PP R
Sbjct: 243 PGKPQGPPPQEGNKPQRPPPPG--RPQGPPPPGGN--PQQPLPPPAGKPQGPPPPPQGGR 298
Query: 251 APAP 254
P
Sbjct: 299 PHRP 302
Score = 54.3 bits (129), Expect = 1e-07
Identities = 42/127 (33%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 136 PKGIGMKGGGP--GLPPR-GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV 192
P+G +GG G PP GK GP Q + P RP G + G + QG
Sbjct: 162 PEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP--- 218
Query: 193 GPTGPRPTGAPPSR-----RTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPAS 247
P P PPS+ + PPP P +P + P G P RP PP G P+ PP
Sbjct: 219 -PPRPGKPEGPPSQGGNKPQGPPPHPGKP-QGPPPQEGNKPQRP--PPPGRPQGPPPPGG 274
Query: 248 TTRAPAP 254
+ P P
Sbjct: 275 NPQQPLP 281
Score = 48.9 bits (115), Expect = 6e-06
Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 136 PKGIGMKGGGP--GLPPR-GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV 192
P+G +GG G PPR GK GP + + P P +G + G + Q
Sbjct: 204 PEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPP 263
Query: 193 G-PTGPRPTGAPPSRRTPPPG--PRRPLRSPHSGSGWTPARPPSPPAGAP 239
G P GP P G P + PPP P+ P P G RP PP G P
Sbjct: 264 GRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQGG------RPHRPPQGQP 307
Score = 47.0 bits (110), Expect = 2e-05
Identities = 40/130 (30%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 136 PKGIGMKGGGP--GLPPR-GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV 192
P+G +GG G PPR GK GP Q + P RP G + G + QG
Sbjct: 57 PEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPR 116
Query: 193 G--PTGPRPTGA-----PPSRRTPPPGPRRPLRSPHSGSGWTPARPPS-PPAGAPEALRP 244
P GP P G PP R P GP + G P +P PP G ++ P
Sbjct: 117 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 176
Query: 245 PASTTRAPAP 254
P + P
Sbjct: 177 PPHPGKPEGP 186
Score = 43.5 bits (101), Expect = 3e-04
Identities = 39/130 (30%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 136 PKGIGMKGGGP--GLPPR-GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV 192
P+G +GG G PPR GK G Q + P RP G + G + QG
Sbjct: 78 PEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 137
Query: 193 G--PTGPRPTGA-----PPSRRTPPPGPRRPLRSPHSGSGWTPARPPS-PPAGAPEALRP 244
P GP P G PP R P GP + G P +P PP G ++ P
Sbjct: 138 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGP 197
Query: 245 PASTTRAPAP 254
P + P
Sbjct: 198 PPRPGKPEGP 207
Score = 40.8 bits (94), Expect = 0.002
Identities = 37/122 (30%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 136 PKGIGMKGGGPGL---PPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV 192
P+G +GG PP GK G RP + ++G RPG
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEG----------RPPQGGNQSQGPPPRPGK-------- 77
Query: 193 GPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAP 252
P GP P G S+ PPP P +P P G + PP P G PE PP ++
Sbjct: 78 -PEGPPPQGGNQSQG-PPPRPGKPEGQPPQGGNQSQGPPPRP--GKPEG-PPPQGGNQSQ 132
Query: 253 AP 254
P
Sbjct: 133 GP 134
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 54.7 bits (130), Expect = 1e-07
Identities = 54/169 (31%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 101 TAPETLPDP--APLTDSLLAAPYIFLSAGAVQKGDFG---PKGIGMKGGGPGLPPRGKAS 155
T TLP P P T SL AP + KG PKG M P+G +
Sbjct: 1059 TPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLA 1118
Query: 156 GPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ----GAAAVGPTG----PRPTGAPPSRR 207
P A P P +GG P +G A P G P P GAP +
Sbjct: 1119 TPPHKGAPTT--PAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPA 1176
Query: 208 TPPPGPRRPLRSPH-SGSGWTPAR-PPSPPAGAPEALRPPASTTRAPAP 254
PP P+ L +P G+ TPA PPSP G A TT A P
Sbjct: 1177 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1225
Score = 50.8 bits (120), Expect = 2e-06
Identities = 57/203 (28%), Positives = 75/203 (36%), Gaps = 28/203 (13%)
Query: 60 PSSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTDSLLAA 119
PS + PS +T SP T+ KE + P P P T + A
Sbjct: 859 PSPKGAPTPSAVTPLSPKGV--------TLPPKETPTPSVVNLP--FPKEGPATPAPKQA 908
Query: 120 PYIFLSAGAVQKGDF--GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRG 177
P + +++ + +K PKGI G P A+ P+ P P T
Sbjct: 909 PALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAP--TPP 966
Query: 178 GARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTP--ARPPSP- 234
A P +G GP P P GAP PP P+ +P TP PPSP
Sbjct: 967 AATPPSPKG------GPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPK 1020
Query: 235 --PAGAP---EALRPPASTTRAP 252
PA P A PPA+T +P
Sbjct: 1021 GSPAATPFPKGASTPPAATPPSP 1043
Score = 49.7 bits (117), Expect = 4e-06
Identities = 40/133 (30%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 142 KGGGPGLPPRGKASGPARDSAQQR------------RRPTRRPRGTRGGARRPGVRGQ-- 187
KGG PP+G + PA + P P +GG P +G
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPT 1196
Query: 188 --GAAAVGPTG----PRPTGAPPSRRTPPPGPRRPLRSPH-SGSGWTPARPPSPPAGAPE 240
A P G P P GAP + PP P+ L +P G+ TPA P P G P
Sbjct: 1197 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGP- 1255
Query: 241 ALRPPASTTRAPA 253
A PP PA
Sbjct: 1256 ATPPPKGAPTPPA 1268
Score = 49.3 bits (116), Expect = 5e-06
Identities = 42/136 (30%), Positives = 53/136 (38%), Gaps = 26/136 (19%)
Query: 142 KGGGPGLP-PRGKASGPARDSAQQRRRP--TRRPRGT-----------RGGARRPGVRGQ 187
KG P P+G ++ PA + P T P+G +GG P ++G
Sbjct: 1020 KGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA 1079
Query: 188 GAAAV--------GPTGPRPTGAPPSRRTPPPGPRRPLRS-PHSGSGWTP-ARPPSPPAG 237
GP P P GAP PP P+ L + PH G+ TP A PPSP G
Sbjct: 1080 PTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 238 APEALRPPASTTRAPA 253
A PP PA
Sbjct: 1140 L--ATPPPKGAPTTPA 1153
Score = 48.9 bits (115), Expect = 6e-06
Identities = 40/121 (33%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 144 GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAP 203
GGP PP A P P P +GG P +G AV T P P G P
Sbjct: 1253 GGPATPPPKGAPTP----------PAATPPSLKGGLATPPHKGAPNPAV-VTPPSPKGGP 1301
Query: 204 PSRRTPPPG-PRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSAR 262
+ +PP G P P +P S G +P PP A P A+ PP+ P T S
Sbjct: 1302 AT--SPPKGAPTPPAATPPSPKG-SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKG 1358
Query: 263 G 263
G
Sbjct: 1359 G 1359
Score = 43.9 bits (102), Expect = 2e-04
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 17/132 (12%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV--- 192
PKG P+G + P+ A P P +GG P +G
Sbjct: 1191 PKGAPTTPAATPPSPKGGLATPSPKGAPTT--PAATPPSPKGGLATPSPKGAPTTPAATP 1248
Query: 193 -----GPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPA--RPPSP---PAGAPE-- 240
GP P P GAP PP + L +P PA PPSP PA +P
Sbjct: 1249 PSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKG 1308
Query: 241 ALRPPASTTRAP 252
A PPA+T +P
Sbjct: 1309 APTPPAATPPSP 1320
Score = 42.7 bits (99), Expect = 4e-04
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 16/121 (13%)
Query: 142 KGGGPGLPPRGKASGPARDSAQQRRRP-TRRPRG--TRGGARRPGVRGQGAAAVGPTGPR 198
KGG P+G + PA + P T P+G T A P ++G G P
Sbjct: 1229 KGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKG------GLATPP 1282
Query: 199 PTGAPPSRRTPPPGPRR-PLRSPHSGSGWTPARPPSPPAGAP------EALRPPASTTRA 251
GAP PP P+ P SP G+ PA P P G+P A PPA T +
Sbjct: 1283 HKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPS 1342
Query: 252 P 252
P
Sbjct: 1343 P 1343
Score = 40.4 bits (93), Expect = 0.002
Identities = 40/136 (29%), Positives = 45/136 (33%), Gaps = 25/136 (18%)
Query: 144 GGPGLP-PRGKASGPARDSAQQRRRPTRRP----RGTRGGARRPGVRGQGAAAVGPTG-- 196
GGP P P+G + PA + P P T A P +G AA P G
Sbjct: 998 GGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP 1057
Query: 197 -------PRPTGAP----------PSRRTPPPGPRRPLRSPHSGSGWTPAR-PPSPPAGA 238
P P G P P TPP P G+ PA PPSP G
Sbjct: 1058 TTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGL 1117
Query: 239 PEALRPPASTTRAPAP 254
A TT A P
Sbjct: 1118 ATPPHKGAPTTPAATP 1133
Score = 38.1 bits (87), Expect = 0.011
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 142 KGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG 201
KGG PP+G + PA + P P +G P V T P P G
Sbjct: 1298 KGGPATSPPKGAPTPPAATPPSPKGSPGTPP--PKGAPTPPAV----------TPPSPKG 1345
Query: 202 APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAP 252
P T P P +P S G P+PPA P PA T +P
Sbjct: 1346 TPTLPATTPSSKGGP-TTPSSKEG------PTPPAATPSHKGGPAMTPPSP 1389
Score = 37.7 bits (86), Expect = 0.014
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 144 GGPGLPP-RGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGA 202
G PG PP +G + PA + PT A P +G GP P A
Sbjct: 1322 GSPGTPPPKGAPTPPAVTPPSPKGTPTLP-------ATTPSSKGGPTTPSSKEGPTPPAA 1374
Query: 203 PPSRR-----TPPPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
PS + TPP R P G +PA P P AP
Sbjct: 1375 TPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAP 1416
Score = 36.6 bits (83), Expect = 0.031
Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 20/135 (14%)
Query: 145 GPGLP-PRGKASGPARDSAQQRRRP----TRRPRGT--RGGARRPGVR--------GQGA 189
GP +P P+G + PA ++ P TR T +G P V A
Sbjct: 1392 GPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSA 1451
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPA--GAPEALRPPAS 247
GP P G P PP P+ P + +P + P+ PA GAP PA
Sbjct: 1452 PKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTL---PAV 1508
Query: 248 TTRAPAPLTLSFSAR 262
+P + + S+R
Sbjct: 1509 IPSSPKEVPATPSSR 1523
Score = 36.2 bits (82), Expect = 0.041
Identities = 47/178 (26%), Positives = 66/178 (37%), Gaps = 26/178 (14%)
Query: 102 APETLPDPAPLTDSLLAAPYIFLSAGAVQKGDFGP---KGIGMKGGGPGLPPRGKASGPA 158
AP+ P P+T S L ++ + G P KG+ K G L + PA
Sbjct: 1632 APKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTAL--KEVLVAPA 1689
Query: 159 RDSAQQRRRPTRR-PRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP--------SRRTP 209
+S PTR+ P+ + A P + +A G GP T AP S +T
Sbjct: 1690 PESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTA 1749
Query: 210 --------PPGPRRPLRS----PHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPL 255
P GP P S P + + + P A A PP S AP+P+
Sbjct: 1750 KGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPV 1807
Score = 35.0 bits (79), Expect = 0.090
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPS 205
P +P +A PA S+++ P T GA P + T P P AP
Sbjct: 1562 PAIPTPKEA--PATPSSKEASSPPAVTPSTYKGAPSPK---ELLIPPAVTSPSPKEAPTP 1616
Query: 206 RRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTT 249
PP P + +P TP PP P+ ++ PAS T
Sbjct: 1617 PAVTPPSPEKGPATP--APKGTPTSPPVTPSSLKDSPTSPASVT 1658
Score = 29.3 bits (64), Expect = 5.0
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 183 GVRGQGAAAVGPTGPRPTGAP-PSRRTP--PPGPRRP-----------LRSPHSGSGWTP 228
G + A PT P P GAP PS TP P G P L P G TP
Sbjct: 845 GSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPA-TP 903
Query: 229 ARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARG 263
A +P + A T AP + S S +G
Sbjct: 904 APKQAPALSMTSSSPKKARATPAPKGIPASPSPKG 938
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 53.5 bits (127), Expect = 2e-07
Identities = 44/142 (30%), Positives = 55/142 (38%), Gaps = 29/142 (20%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPT 195
P+G G P PP GK P Q RP P G RP +G + P
Sbjct: 104 PQGGNQSQGTP--PPPGKPERPPPQGGNQSHRPPPPP----GKPERPPPQGGNQSQGPPP 157
Query: 196 GP-RPTGAPP-------SRRTPPPGPR--------RPLRSPHSG-------SGWTPARPP 232
P +P G PP S R+PP P+ +P P G +G P +P
Sbjct: 158 HPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQ 217
Query: 233 SPPAGAPEALRPPASTTRAPAP 254
+PPAG P+ PP R P P
Sbjct: 218 APPAGKPQGPPPPPQGGRPPRP 239
Score = 52.8 bits (125), Expect = 4e-07
Identities = 45/127 (35%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 136 PKGIGMKGGGPGL---PPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA-- 190
P+G +GG PP GK GP Q + P P G + G + QG
Sbjct: 36 PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPH 95
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPP---AS 247
P P P G S+ TPPP P +P R P G G RPP PP G PE RPP +
Sbjct: 96 PGKPERPPPQGGNQSQGTPPP-PGKPERPPPQG-GNQSHRPP-PPPGKPE--RPPPQGGN 150
Query: 248 TTRAPAP 254
++ P P
Sbjct: 151 QSQGPPP 157
Score = 47.8 bits (112), Expect = 1e-05
Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 7/121 (5%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAV--G 193
P+G G P PP GK G Q + P P + G + QG
Sbjct: 62 PQGGNQSQGPP--PPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGK 119
Query: 194 PTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP--PAGAPEALRPPASTTRA 251
P P P G S R PPP P +P R P G + PP P P G P + + R+
Sbjct: 120 PERPPPQGGNQSHRPPPP-PGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARS 178
Query: 252 P 252
P
Sbjct: 179 P 179
Score = 38.1 bits (87), Expect = 0.011
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG-P 194
P+G G P P GK GP + R P +G ++ G + QG G P
Sbjct: 146 PQGGNQSQGPP--PHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKP 203
Query: 195 TGPRPTG-------APPSRRTP-PPGPRRPLRSPHSGSGWTP 228
GP P G APP+ + PP P + R P G P
Sbjct: 204 QGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQGQQP 245
Score = 34.7 bits (78), Expect = 0.12
Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 7/114 (6%)
Query: 143 GGGPGLPPRG--KASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPT 200
G G PP+G ++ GP + R P + ++G PG + G RP
Sbjct: 76 GKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPP 135
Query: 201 GAPPSRRTPPP--GPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAP 252
P PPP G + PH G P PP + R P + P
Sbjct: 136 PPPGKPERPPPQGGNQSQGPPPHPGK---PEGPPPQEGNKSRSARSPPGKPQGP 186
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 53.1 bits (126), Expect = 3e-07
Identities = 42/121 (34%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG-P 194
P+G G K PP GK GP Q + P P +G + G + QG G P
Sbjct: 288 PQG-GSKSRSSRSPP-GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 345
Query: 195 TGPRPTGAPPSR--RTPPPGPRRP-------LRSPHSGSGWTPARPPSPPAGAPEA-LRP 244
GP P G SR R+PP P+ P + P +G P +P +PPAG P+ RP
Sbjct: 346 QGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 405
Query: 245 P 245
P
Sbjct: 406 P 406
Score = 49.3 bits (116), Expect = 5e-06
Identities = 42/120 (35%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG-P 194
P+G G K GP PP GK GP Q + P P +G + G + QG G P
Sbjct: 41 PQG-GNKPQGPPSPP-GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 98
Query: 195 TGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAP 254
GP P G R+P P +P P G G P PP PP G P+ PP + P
Sbjct: 99 QGPPPQG--DKSRSPRSPPGKPQGPPPQG-GNQPQGPP-PPPGKPQG-PPPQGGNKPQGP 153
Score = 47.8 bits (112), Expect = 1e-05
Identities = 41/123 (33%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG- 193
GP G P GK GP Q + P P +G + G + QG G
Sbjct: 223 GPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 282
Query: 194 PTGPRPTGAPPSR--RTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRA 251
P GP P G SR R+PP P+ P P G G P PP PP G P+ PP +
Sbjct: 283 PQGPPPQGGSKSRSSRSPPGKPQGP---PPQG-GNQPQGPP-PPPGKPQG-PPPQGGNKP 336
Query: 252 PAP 254
P
Sbjct: 337 QGP 339
Score = 46.2 bits (108), Expect = 4e-05
Identities = 45/142 (31%), Positives = 56/142 (39%), Gaps = 20/142 (14%)
Query: 127 GAVQKGDFGPKGIGMKGGGPGLPPR-----------GKASGPARDSAQQRRRPTRRPRGT 175
G +G P+G G G PP+ GK GP Q + P P
Sbjct: 80 GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP 139
Query: 176 RGGARRPGVRGQGAAAVG-PTGPRPTGAPPSR--RTPPPGPRRPLRSPHSGSGWTPARPP 232
+G + G + QG G P GP P G SR R+PP P+ P P G G P PP
Sbjct: 140 QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGP---PPQG-GNQPQGPP 195
Query: 233 SPPAGAPEALRPPASTTRAPAP 254
PP G P+ PP + P
Sbjct: 196 -PPPGKPQG-PPPQGGNKPQGP 215
Score = 45.1 bits (105), Expect = 9e-05
Identities = 40/123 (32%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG- 193
GP G P GK GP Q + P P +G + G + QG G
Sbjct: 161 GPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 220
Query: 194 PTGPRPTG--APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRA 251
P GP P G S R+PP P+ P P G G P PP PP G P+ PP +
Sbjct: 221 PQGPPPQGDNKSQSARSPPGKPQGP---PPQG-GNQPQGPP-PPPGKPQG-PPPQGGNKP 274
Query: 252 PAP 254
P
Sbjct: 275 QGP 277
Score = 43.5 bits (101), Expect = 3e-04
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQ--QRRRPTRRPRGT--RGGARRPGVRGQGAAA 191
P+G G P PP GK GP Q P +P+G +GG++ R
Sbjct: 309 PQGGNQPQGPP--PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKP 366
Query: 192 VGPTGPRPTGAPPSRRTPPPG--PRRPLRSPHSGSGWTPARPPSPPAGAPEALRPP 245
GP P+ G P PP G P++P ++P +G P PP PP G + RPP
Sbjct: 367 QGP--PQQEGNNPQGPPPPAGGNPQQP-QAPPAGQ---PQGPPRPPQGGRPS-RPP 415
Score = 34.7 bits (78), Expect = 0.12
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 160 DSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG--PTGPRPTGAPPSRRTPPPGPRRPL 217
+ Q P+ +G + G + QG + P GP P G + PPP P +P
Sbjct: 21 EDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPP-PGKPQ 79
Query: 218 RSPHSGSGWTPARPPSP--PAGAPEALRPPASTTRAP 252
P G G P PP P P G P P +R+P
Sbjct: 80 GPPPQG-GNKPQGPPPPGKPQGPP----PQGDKSRSP 111
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.4 bits (124), Expect = 5e-07
Identities = 51/144 (35%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 131 KGDFGPKGIGMKGGGPGL--PPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR--- 185
KG+ G G +GG PG+ PP G SGPA Q + R G G A PG R
Sbjct: 824 KGERGAPGEKGEGGPPGVAGPPGG--SGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLP 881
Query: 186 GQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPA--GAPEALR 243
G + P P P+G+P + PPGP +P S P P G+P A
Sbjct: 882 GPPGSNGNPGPPGPSGSP--GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG 939
Query: 244 PPASTTRAPAPLTLS--FSARGLA 265
PP AP PL ++ ARGLA
Sbjct: 940 PPG----APGPLGIAGITGARGLA 959
Score = 49.7 bits (117), Expect = 4e-06
Identities = 49/136 (36%), Positives = 53/136 (38%), Gaps = 20/136 (14%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGP--ARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
G GP+G + G PGLP A G AR S Q P P GT G PG +G+
Sbjct: 297 GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPG--PPGTAGFPGSPGAKGE-- 352
Query: 190 AAVGPTG-PRPTGAPPSRRTP----------PPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
VGP G P GAP R P PPGP SP PA P P G
Sbjct: 353 --VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP-GL 409
Query: 239 PEALRPPASTTRAPAP 254
A PP AP
Sbjct: 410 MGARGPPGPAGANGAP 425
Score = 45.4 bits (106), Expect = 7e-05
Identities = 43/129 (33%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GPKG + GGPG GP R PT P G G A +PG +G+G A
Sbjct: 735 GSPGPKGDKGEPGGPGADGVPGKDGP--------RGPTG-PIGPPGPAGQPGDKGEGGAP 785
Query: 192 VGPTGPRPTGAPPSR-RTPPPGPRRPLRSP-----HSGSGWTPARPPSPPAGAPEALRPP 245
P P G+P R T PPGP +P G G A G P PP
Sbjct: 786 GLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPP 845
Query: 246 ASTTRAPAP 254
+ A P
Sbjct: 846 GGSGPAGPP 854
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/110 (33%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGP 194
G KG K G PG P G A + R P G G G RG A GP
Sbjct: 459 GAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERG----APGP 514
Query: 195 TGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
GPR P R P GP P S G P PP E+ RP
Sbjct: 515 AGPRGAAGEPGRDGVPGGPGM-RGMPGSPGGPGSDGKPGPPGSQGESGRP 563
Score = 44.7 bits (104), Expect = 1e-04
Identities = 37/114 (32%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKA-SGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
+ G+ GP+G GP P K +GP Q T P G G PG +G
Sbjct: 610 KNGETGPQG----PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDA 665
Query: 189 AAAVGPTGPRPTGAPPSRRTP----PPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
A P G GAP R P PG R P G A PP PP A
Sbjct: 666 GAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAA 719
Score = 44.3 bits (103), Expect = 1e-04
Identities = 46/158 (29%), Positives = 54/158 (34%), Gaps = 19/158 (12%)
Query: 136 PKGIGMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG------- 186
P G GM+G G PG P GP + R P G RG +PGV G
Sbjct: 530 PGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG---QPGVMGFPGPKGN 586
Query: 187 -----QGAAAVGPTGPRPTGAP-PSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPE 240
+ GP GP P G P + T P GP P P G T P G P
Sbjct: 587 DGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGP-TGPGGDKGDTGPPGPQGLQGLPG 645
Query: 241 ALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSER 278
PP + P + A G+ A ER
Sbjct: 646 TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGER 683
Score = 43.5 bits (101), Expect = 3e-04
Identities = 43/132 (32%), Positives = 50/132 (37%), Gaps = 13/132 (9%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP G K G PG P+G A P + RG G A PG+RG GA
Sbjct: 645 GTGGPPGENGKPGEPG--PKGDAGAPGAPGGKGDAGAPGE-RGPPGLAGAPGLRG-GAGP 700
Query: 192 VGPTGPR----PTGAPPSRRTP----PPGPRRPLRSP-HSGSGWTPARPPSPPAGAPEAL 242
GP G + P G P + TP PG R L SP G P P + +
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGP 760
Query: 243 RPPASTTRAPAP 254
R P P P
Sbjct: 761 RGPTGPIGPPGP 772
Score = 41.6 bits (96), Expect = 0.001
Identities = 43/150 (28%), Positives = 51/150 (34%), Gaps = 27/150 (18%)
Query: 130 QKGDFGPKGIGMKGGGPGLP-----PRGKAS-GPARDSAQQRRRPTRRPRGTRGGARRPG 183
Q+G+ GP+G G PG P P GK GPA R P G G PG
Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPG 426
Query: 184 VRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARP------------ 231
+RG GA G G + P R P P G +P P
Sbjct: 427 LRG-GAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGER 485
Query: 232 -------PSPPAGAPEALRPPASTTRAPAP 254
P+ P G P + PA AP P
Sbjct: 486 GAPGFRGPAGPNGIP-GEKGPAGERGAPGP 514
Score = 41.6 bits (96), Expect = 0.001
Identities = 54/167 (32%), Positives = 62/167 (37%), Gaps = 29/167 (17%)
Query: 100 GTAPETLPDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLP-------PRG 152
GTA E D P +D L P S G KGD G G G PG P P G
Sbjct: 1005 GTAGEPGRDGNPGSDGL---PGRDGSPGG--KGDRGENGSPGAPGAPGHPGPPGPVGPAG 1059
Query: 153 KA--------SGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTG-PRPTGAP 203
K+ +GPA R P+G RG G RG A G G P GAP
Sbjct: 1060 KSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERG-AAGIKGHRGFPGNPGAP 1118
Query: 204 PSRRTPPPGPRRPLRSPHSGSGWTPARPPSPP-----AGAPEALRPP 245
S P G + + SP P P PP +G P + PP
Sbjct: 1119 GS--PGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPP 1163
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 22/126 (17%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASG--------PARDSAQQRRRPTRRPRGTRGGARRP 182
KGD GP GI + G PG+P + + G + + Q P + G
Sbjct: 108 KGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG 167
Query: 183 GVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARP----PSPPAGA 238
G+ G GP GP PP P P P G P P PS P G
Sbjct: 168 GLAGY----PGPAGPPGPPGPPGTSGHPGSPGSP------GYQGPPGEPGQAGPSGPPGP 217
Query: 239 PEALRP 244
P A+ P
Sbjct: 218 PGAIGP 223
Score = 39.7 bits (91), Expect = 0.004
Identities = 40/120 (33%), Positives = 47/120 (39%), Gaps = 24/120 (20%)
Query: 131 KGDFGPKG-IGMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ 187
KG+ G +G G+KG G PG P + GPA G +G PG G
Sbjct: 1094 KGETGERGAAGIKGHRGFPGNPGAPGSPGPA---------------GQQGAIGSPGPAGP 1138
Query: 188 GAAAVGPTGPRPTGAPPSRRTP--PPGPRRPLRSPHSGSGWTPARPPSP-PAGAPEALRP 244
VGP+GP P PPGPR GS +P P P P G P A P
Sbjct: 1139 -RGPVGPSGPPGKDGTSGHPGPIGPPGPRG--NRGERGSEGSPGHPGQPGPPGPPGAPGP 1195
Score = 39.3 bits (90), Expect = 0.005
Identities = 44/148 (29%), Positives = 52/148 (35%), Gaps = 29/148 (19%)
Query: 132 GDFGPKGIGMKGGGPGLP----PRGKAS--------GPAR------DSAQQRRRPTRRPR 173
G G G +GG PGLP PRG GPA + + + R
Sbjct: 771 GPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAP 830
Query: 174 GTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGP-------RRPLRSPHSGSGW 226
G +G PGV G + GP GP R P GP R L P GS
Sbjct: 831 GEKGEGGPPGVAGPPGGS-GPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGP-PGSNG 888
Query: 227 TPARPPSPPAGAPEALRPPASTTRAPAP 254
P P P+G+P PP AP
Sbjct: 889 NPG--PPGPSGSPGKDGPPGPAGNTGAP 914
Score = 38.9 bits (89), Expect = 0.006
Identities = 40/126 (31%), Positives = 49/126 (38%), Gaps = 27/126 (21%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ---- 187
G+ GP G+ G PGL RG A P + + P G G A PG++G
Sbjct: 681 GERGPPGLA---GAPGL--RGGAGPPGPEGG----KGAAGPPGPPGAAGTPGLQGMPGER 731
Query: 188 -GAAAVGPT-------GPRPTGAP----PSRRTPPPGPRRPLRSP-HSGSGWTPARPP-S 233
G + GP GP G P P T P GP P P G G P P +
Sbjct: 732 GGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIA 791
Query: 234 PPAGAP 239
P G+P
Sbjct: 792 GPRGSP 797
Score = 36.2 bits (82), Expect = 0.041
Identities = 37/129 (28%), Positives = 43/129 (33%), Gaps = 14/129 (10%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
+ G G G + G PG +G + R P G RG A PG G
Sbjct: 472 EPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGV-- 529
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARP----PSPPAGAPEALRPP 245
P GP G P S P GP + GS RP PS P G P + P
Sbjct: 530 ----PGGPGMRGMPGS----PGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP 581
Query: 246 ASTTRAPAP 254
AP
Sbjct: 582 GPKGNDGAP 590
Score = 36.2 bits (82), Expect = 0.041
Identities = 36/113 (31%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 132 GDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ 187
G GP G G PG P P+G A P + + P P G G A G RG
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAP-GPLGIAGITGARG- 957
Query: 188 GAAAVGPTG-PRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
GP G P P G+P P G + P +G + R P P G P
Sbjct: 958 ---LAGPPGMPGPRGSP-----GPQGVKGESGKP-GANGLSGERGPPGPQGLP 1001
Score = 33.9 bits (76), Expect = 0.20
Identities = 39/127 (30%), Positives = 45/127 (35%), Gaps = 14/127 (11%)
Query: 132 GDFGPKGIGMKGGGPGLP-PRGKAS-----GPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
G G KG G PG P P G A G A R + P+G +G + +PG
Sbjct: 927 GQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGAN 986
Query: 186 GQGAAAVGPTGPR------PTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPA-GA 238
G GP GP+ T P R P P R G SP A GA
Sbjct: 987 GLSGER-GPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGA 1045
Query: 239 PEALRPP 245
P PP
Sbjct: 1046 PGHPGPP 1052
Score = 32.3 bits (72), Expect = 0.59
Identities = 35/109 (32%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
Q G GP G G PG P GPA G G PG +G A
Sbjct: 331 QPGPPGPPG---TAGFPGSPGAKGEVGPAGSPGS---------NGAPGQRGEPGPQGH-A 377
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
A GP GP P + G P P G AR P PAGA
Sbjct: 378 GAQGPPGPPGINGSPGGK----GEMGPAGIP-GAPGLMGARGPPGPAGA 421
Score = 32.3 bits (72), Expect = 0.59
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
+G GP+G+ + G PG GP T G G G+ G+ +
Sbjct: 968 RGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS 1027
Query: 191 AVGPTGPRPTGAPPSRRTP----PPGPRRPLRSPHSGSGWTPARP-----PSPPAGAP 239
G G+P + P PPGP P PA P P+ GAP
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAP 1085
Score = 31.6 bits (70), Expect = 1.0
Identities = 48/160 (30%), Positives = 51/160 (31%), Gaps = 40/160 (25%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRR--RPTRR----PRGTRGGARRPGV 184
+G G G G PG P SGPA + R RP R P G +G A PG
Sbjct: 200 QGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGF 259
Query: 185 RGQ----------------GA-------------AAVGPTGPRPTGAPPSRRTP--PPGP 213
G GA A GP GPR GAP R P P
Sbjct: 260 PGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPR--GAPGERGRPGLPGAA 317
Query: 214 RRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPA 253
GS P PP PP A P A PA
Sbjct: 318 GARGNDGARGSDGQPG-PPGPPGTAGFPGSPGAKGEVGPA 356
Score = 29.3 bits (64), Expect = 5.0
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP G G PG P GP + Q G G PG A
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQ---------AGPSGPPGPPG-------A 220
Query: 192 VGPTGP--------RPTGAPPSRRTP-PPGPRRPLRSP 220
+GP+GP RP G P R P PPG + P P
Sbjct: 221 IGPSGPAGKDGESGRP-GRPGERGLPGPPGIKGPAGIP 257
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 52.4 bits (124), Expect = 5e-07
Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 136 PKGIGMKGGGP--GLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG 193
P+G +GG G PP GK GP + R R P G G G + QG G
Sbjct: 57 PQGPPPQGGNKPQGPPPPGKPQGPPPQG--DKSRSPRSPPGKPQGPPPQGGKPQGPPPQG 114
Query: 194 ---PTGPRPTGAPP-----------SRRTPPPGPRRPLRS-------PHSGSGWTPARPP 232
P GP P G P S R+PP P+ P + P +G P +P
Sbjct: 115 GNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQ 174
Query: 233 SPPAGAPEA-LRPP 245
+PPAG P+ RPP
Sbjct: 175 APPAGQPQGPPRPP 188
Score = 43.5 bits (101), Expect = 3e-04
Identities = 37/122 (30%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTR---RPRGTRGGARRPGVRGQGAA- 190
GP G K P PP GK GP + + P + +P+G + G QG +
Sbjct: 79 GPPPQGDKSRSPRSPP-GKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSK 137
Query: 191 ---AVGPTGPRPTGAPPSRRTPPPGPRRPL----RSPHSGSGWTPARPPSPPAGAPEALR 243
A P G +P G P P GP P + P + P PP PP G + R
Sbjct: 138 SQSARSPPG-KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPS-R 195
Query: 244 PP 245
PP
Sbjct: 196 PP 197
Score = 39.7 bits (91), Expect = 0.004
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG-PTGPRPTG-------AP 203
G GP+ + + P P +G + G + QG G P GP P G +P
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Query: 204 PSR-RTPPPGPRRPLRSPHSGSGWTPARPPSP--PAGAPEALRPPASTTRAP 252
P + + PPP +P P G G P PP P P G P + + R+P
Sbjct: 94 PGKPQGPPPQGGKPQGPPPQG-GNKPQGPPPPGKPQGPPAQGGSKSQSARSP 144
Score = 36.2 bits (82), Expect = 0.041
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
A P GP P G + PPP P +P P G G P P PP G P+ P +R
Sbjct: 33 AGNPQGPSPQGGNKPQGPPPP-PGKPQGPPPQG-GNKPQGP--PPPGKPQGPPPQGDKSR 88
Query: 251 AP 252
+P
Sbjct: 89 SP 90
Score = 32.3 bits (72), Expect = 0.59
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 187 QGAAAVGPTGPRPTGAPP----SRRTPPPGPRRPLRSPHSGSGWTP------ARPPSPPA 236
QG + G G +P G PP + PP G +P P G P +R P P
Sbjct: 37 QGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP 94
Query: 237 GAPEALRPPASTTRAPAP 254
G P+ P + P P
Sbjct: 95 GKPQGPPPQGGKPQGPPP 112
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 136 PKGIGMKGGGP--GLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG 193
P+G +GG G PP GK GP + R R P G G G + QG A G
Sbjct: 57 PQGPPPQGGNKPQGPPPPGKPQGPPPQG--DKSRSPRSPPGKPQGPPPQGGKPQGPPAQG 114
Query: 194 PTGPRPTGAPPSR-RTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEA-LRPP 245
+ + +PP + + PP + P +G P +P +PPAG P+ RPP
Sbjct: 115 GSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 168
Score = 36.2 bits (82), Expect = 0.041
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
A P GP P G + PPP P +P P G G P P PP G P+ P +R
Sbjct: 33 AGNPQGPSPQGGNKPQGPPPP-PGKPQGPPPQG-GNKPQGP--PPPGKPQGPPPQGDKSR 88
Query: 251 AP 252
+P
Sbjct: 89 SP 90
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 50.4 bits (119), Expect = 2e-06
Identities = 50/143 (34%), Positives = 54/143 (37%), Gaps = 37/143 (25%)
Query: 126 AGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
AGA KGD GP G G PG P G P +G RG A PG
Sbjct: 832 AGA--KGDAGPPGPAGPAGPPG--PIGNVGAPGA-------------KGARGSAGPPGAT 874
Query: 186 GQGAAA--VGPTGPRPTGAPPSRRTPPPGP--RRPLRSPHSGSGWTPA------RPPSPP 235
G AA VGP GP PP PPGP + + P +G PA PP PP
Sbjct: 875 GFPGAAGRVGPPGPSGNAGPPG----PPGPAGKEGGKGPRGETG--PAGRPGEVGPPGPP 928
Query: 236 AGAPEALRP----PASTTRAPAP 254
A E P PA P P
Sbjct: 929 GPAGEKGSPGADGPAGAPGTPGP 951
Score = 45.1 bits (105), Expect = 9e-05
Identities = 44/141 (31%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 127 GAV-QKGDFGPKGI-GMKG-----GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGA 179
GAV KG+ GP+G G +G G PG P A+GPA + + + G G A
Sbjct: 347 GAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA 406
Query: 180 RRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTP----ARPPSPP 235
PG G A GP+GP+ G PP + P P +G+ P + P P
Sbjct: 407 GAPGFPG----ARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGP 462
Query: 236 AG--APEALRPPASTTRAPAP 254
AG R T P P
Sbjct: 463 AGEEGKRGARGEPGPTGLPGP 483
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 131 KGDFGPKGI-GMKG--GGPG---LPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV 184
+G+ GP G+ G G GGPG P +GP + ++ P+G+ G A RPG
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 531
Query: 185 RGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEA 241
G A G TG P P +T PPGP +G P PP PP +A
Sbjct: 532 AGL-PGAKGLTG-SPGSPGPDGKTGPPGP--------AGQDGRPG-PPGPPGARGQA 577
Score = 44.3 bits (103), Expect = 1e-04
Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KGD G G G PGL G A + R P+G G + GVRG
Sbjct: 709 KGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRG---- 764
Query: 191 AVGPTG-PRPTGAPPSR-RTPPPGPRRPLRSPHSGSGWTPARPPSPP--AGAPEALRPPA 246
GP G P P GAP + + P GP P + + PP P AG P A P
Sbjct: 765 LTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG 824
Query: 247 S 247
+
Sbjct: 825 A 825
Score = 42.7 bits (99), Expect = 4e-04
Identities = 43/138 (31%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 132 GDFGPKGIGMKGGGPGLP-PRGK--ASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
G GP G G PG P P GK GP ++ R P G G A G G
Sbjct: 881 GRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGAD 940
Query: 189 AAAVGPTGPRPTGAP--------PSRRTPPPGPRRPLRSPHSG----SGWTPARPPSPPA 236
A P P P G P +R P P S G SG + R P P
Sbjct: 941 GPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPM 1000
Query: 237 GAPEALRPPASTTRAPAP 254
G P PP + R AP
Sbjct: 1001 GPPGLAGPPGESGREGAP 1018
Score = 41.6 bits (96), Expect = 0.001
Identities = 46/152 (30%), Positives = 56/152 (36%), Gaps = 29/152 (19%)
Query: 131 KGDFGPKGI-------GMKG-----------GGPGLPPRGKASGPARDSAQQRRRPTRR- 171
+GD GPKG G++G G PG SGPA + R P R
Sbjct: 745 RGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG-ARGAPGDRG 803
Query: 172 ---PRGTRGGARRPGVRGQGAA--AVGPTGPRPTGAPPSRRTP--PPGPRRPLRSPHSGS 224
P G G A PG GQ A G G + PP P PPGP + +P +
Sbjct: 804 EPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKG 863
Query: 225 GWTPARPPSPPA--GAPEALRPPASTTRAPAP 254
A PP GA + PP + A P
Sbjct: 864 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 895
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/120 (37%), Positives = 53/120 (44%), Gaps = 29/120 (24%)
Query: 130 QKGDFGPKG----IGMKG--GGPGLP----PRGKASGPARDSAQQRRRPTRRPRGTRGGA 179
++GD G KG G++G G PG P P G ASGPA PRG G A
Sbjct: 1101 EQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG-ASGPAG------------PRGPPGSA 1147
Query: 180 RRPGVRGQGA--AAVGPTGPR-PTG-APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPP 235
PG G +GP GPR TG A P PPGP P P +G ++ P PP
Sbjct: 1148 GAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFL--PQPP 1205
Score = 40.8 bits (94), Expect = 0.002
Identities = 43/141 (30%), Positives = 48/141 (34%), Gaps = 31/141 (21%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRP--RGTRGGARRPGVRGQG 188
KGD GP G P+G+ P + A + P P RG G G RG
Sbjct: 277 KGDAGPAG-----------PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGND 325
Query: 189 AA--AVGPTGPRPTGAPP--------SRRTPPPGPRRPLRSPHSGSGWTPARPPSP---- 234
A A GP GP PP P GPR P G PP P
Sbjct: 326 GATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGS-EGPQGVRG--EPGPPGPAGAA 382
Query: 235 -PAGAPEALRPPASTTRAPAP 254
PAG P A P + AP
Sbjct: 383 GPAGNPGADGQPGAKGANGAP 403
Score = 40.0 bits (92), Expect = 0.003
Identities = 55/172 (31%), Positives = 66/172 (38%), Gaps = 35/172 (20%)
Query: 100 GTAPETLPDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPG-LPPRGKA--SG 156
G ET P P AP AG + GD G G G G + RG A G
Sbjct: 1034 GDRGETGPAGPPGAPGAPGAPGPVGPAG--KSGDRGETGPAGPAGPVGPVGARGPAGPQG 1091
Query: 157 PARDSAQQRRRPTRRPRGTRGGARRPGVRG-------QG-AAAVGPTGPRPTGAPPSRRT 208
P D + + R +G RG + G G QG + A GP GPR G P S
Sbjct: 1092 PRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR--GPPGSAGA 1149
Query: 209 P-------------PPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPAS 247
P PPGPR R+ +G P PP PP G P PP++
Sbjct: 1150 PGKDGLNGLPGPIGPPGPRG--RTGDAG----PVGPPGPP-GPPGPPGPPSA 1194
Score = 40.0 bits (92), Expect = 0.003
Identities = 47/170 (27%), Positives = 56/170 (32%), Gaps = 46/170 (27%)
Query: 131 KGDFGPKGIGMKGGGPGLP----PRGKA--------SGPARDSAQQRRRPTRRPRGTRGG 178
+G+ GP G G PG P P GK+ +GPA R P+G RG
Sbjct: 1036 RGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 179 ARRPGVRGQG--------AAAVGPTGP--RPTGAPPSRRTPPPGPRRPLRSPHSGSGWTP 228
G +G + GP GP P PS + P GPR P GS P
Sbjct: 1096 KGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGP-----PGSAGAP 1150
Query: 229 AR-----------PPSP--------PAGAPEALRPPASTTRAPAPLTLSF 259
+ PP P P G P PP A SF
Sbjct: 1151 GKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSF 1200
Score = 38.9 bits (89), Expect = 0.006
Identities = 38/126 (30%), Positives = 43/126 (34%), Gaps = 34/126 (26%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQ-QRRRPTRRPRGTRGGARRPGVRGQGA 189
KGD GP+G PRG A P RD Q P P G G PG+ G A
Sbjct: 114 KGDTGPRG-----------PRGPAGPPGRDGIPGQPGLP--GPPGPPGPPGPPGLGGNFA 160
Query: 190 ------------------AAVGPTGPRPTGAPPSRRTPP--PGPRRPLRSPHSGSGWTPA 229
+GP+GPR PP P GP P + P
Sbjct: 161 PQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPR 220
Query: 230 RPPSPP 235
PP PP
Sbjct: 221 GPPGPP 226
Score = 38.9 bits (89), Expect = 0.006
Identities = 42/135 (31%), Positives = 51/135 (37%), Gaps = 20/135 (14%)
Query: 131 KGDFGPKG----IGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPR--GTRGGARRPGV 184
KGD G KG +G++G P G A + A+ PT P G RGG PG
Sbjct: 442 KGDTGAKGEPGPVGVQG------PPGPAGEEGKRGARGEPGPTGLPGPPGERGG---PGS 492
Query: 185 RG-QGAAAV----GPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
RG GA V GP G R + P + P RP + G+ P SP
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGK 552
Query: 240 EALRPPASTTRAPAP 254
PA P P
Sbjct: 553 TGPPGPAGQDGRPGP 567
Score = 38.9 bits (89), Expect = 0.006
Identities = 43/126 (34%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA--V 192
G KG+ G PG P GK +GP + Q R P G RG A G G AA
Sbjct: 536 GAKGLTGSPGSPG--PDGK-TGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEP 592
Query: 193 GPTGPRPTGAPPSRRTP-----------PPGPRRPL-RSPHSGSGWTPARPPSP-PAGAP 239
G G R PP P PPGP P G +P P PAG P
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPP 652
Query: 240 -EALRP 244
EA +P
Sbjct: 653 GEAGKP 658
Score = 37.4 bits (85), Expect = 0.018
Identities = 39/134 (29%), Positives = 46/134 (34%), Gaps = 10/134 (7%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQRRRPTRRP--RGTRGGARR 181
A + G+ GP G G G P P G P +R P RG RG
Sbjct: 916 AGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL 975
Query: 182 PGVRGQGAAAVGPTGPRPTGAPPSRRTPP---PGPRRPLRSPHSGSGWTPARPPSPPAGA 238
PG G+ GP+G PP PP P R G+ +P R SP A
Sbjct: 976 PGPSGE-PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Query: 239 PEALRPPASTTRAP 252
PA AP
Sbjct: 1035 DRGETGPAGPPGAP 1048
Score = 37.4 bits (85), Expect = 0.018
Identities = 36/114 (31%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 125 SAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV 184
S + ++G GP G G PG R A G + + RG G A PG
Sbjct: 988 SGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGA 1047
Query: 185 RGQGAAAVGPTGPRPTGAPPSR-RTPPPGPRRPLRSPHSGSGWTPARPPSPPAG 237
G A GP G P G R T P GP P+ G AR P+ P G
Sbjct: 1048 PG-APGAPGPVG--PAGKSGDRGETGPAGPAGPV-------GPVGARGPAGPQG 1091
Score = 36.2 bits (82), Expect = 0.041
Identities = 42/134 (31%), Positives = 48/134 (35%), Gaps = 28/134 (20%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRR-------PRGTRGGARRPGV 184
G GP G K G G+P A GP+ + +R P R P G RG PG
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPS-GARGERGFPGERGVQGPPGPAGPRGANGAPGN 705
Query: 185 RGQGAAAVGPTGPRPTGAPPSRRTPP-------PGPR--RPLRSPHSGSG---------- 225
G A P P GAP + P PGP+ R P G
Sbjct: 706 DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765
Query: 226 WTPARPPSPPAGAP 239
P PP PAGAP
Sbjct: 766 TGPIGPPG-PAGAP 778
Score = 35.4 bits (80), Expect = 0.069
Identities = 41/127 (32%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRP-----RGTRGGARRPGVRG 186
G GP G GG PG P+G + P ++ P +G G A G RG
Sbjct: 413 GARGPSGPQGPGGPPG--PKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Query: 187 QGAAAVGPTG----PRPTGAPPSRRTP----PPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
GPTG P G P SR P GP+ P +G +P P+ P G+
Sbjct: 471 -ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGP-----AGERGSPG--PAGPKGS 522
Query: 239 P-EALRP 244
P EA RP
Sbjct: 523 PGEAGRP 529
Score = 35.4 bits (80), Expect = 0.069
Identities = 39/133 (29%), Positives = 48/133 (36%), Gaps = 14/133 (10%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ 187
A Q+G G G + G PGLP G S R P G G A PG G+
Sbjct: 955 AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 1014
Query: 188 GAAAVGPTGPRPTGAPPSR----RTPPPGPRRPLRSPHSGSGWTPA--------RPPSPP 235
A P G+P ++ T P GP +P + PA P+ P
Sbjct: 1015 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 1074
Query: 236 AG--APEALRPPA 246
AG P R PA
Sbjct: 1075 AGPVGPVGARGPA 1087
Score = 35.0 bits (79), Expect = 0.090
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 34/143 (23%)
Query: 135 GPKGIGM---KGGGPGLPPRGKASGPARDSAQQRRRPTRRP------RGTRGGARRPGVR 185
GPKG K G G+P A GPA + + P RG +G A PG +
Sbjct: 584 GPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQ 643
Query: 186 GQGAAAVGPTG----------------PRPTGAPPSRRTP-------PPGPRRPLRSPHS 222
G A GP G P P+GA R P PPGP P R +
Sbjct: 644 GLPGPA-GPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGP-RGANG 701
Query: 223 GSGWTPARPPSPPAGAPEALRPP 245
G A+ + GAP + P
Sbjct: 702 APGNDGAKGDAGAPGAPGSQGAP 724
Score = 34.7 bits (78), Expect = 0.12
Identities = 33/114 (28%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 125 SAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV 184
+ G G GP G G PG P GP + + PRG G + G
Sbjct: 172 TGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD 231
Query: 185 RGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSG-SGWTPARPPSPPAG 237
G+ A G G R P R P P H G SG A+ + PAG
Sbjct: 232 DGE-AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAG 284
Score = 34.7 bits (78), Expect = 0.12
Identities = 37/120 (30%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP G G PG P A G A Q R + P+G RG PG G A
Sbjct: 329 GAAGPPGPTGPAGPPGFPGAVGAKGEA---GPQGPRGSEGPQGVRGEPGPPGPAGAAGPA 385
Query: 192 VGPTGPR------PTGAPPSRRTPP-PGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
P GAP P PG R P P P PP P + E P
Sbjct: 386 GNPGADGQPGAKGANGAPGIAGAPGFPGARGP-SGPQG-----PGGPPGPKGNSGEPGAP 439
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 50.4 bits (119), Expect = 2e-06
Identities = 42/119 (35%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 135 GPKGIGMKGGGPGLP-PRGKASGPARDSAQQRRRPTRRPR--GTRGGARRPGVRGQGAAA 191
GPKG GG PGLP P G A P P GTRG PG+ G +
Sbjct: 407 GPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSK 466
Query: 192 VGPTGPRPTGAPP------SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
P P P G + T PPGP P HSG P PP PP +A+ P
Sbjct: 467 GDPGSPGPPGPAGIATKGLNGPTGPPGPPGP--RGHSGEPGLPG-PPGPPGPPGQAVMP 522
Score = 42.7 bits (99), Expect = 4e-04
Identities = 43/132 (32%), Positives = 47/132 (35%), Gaps = 19/132 (14%)
Query: 131 KGDFGPKGI-GMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ 187
KGD GP G+ G +G G PG+P S P + QQ PRG G PGV G
Sbjct: 126 KGDVGPAGLPGPRGPPGPPGIPGPAGISVPGK-PGQQGPTGAPGPRGFPGEKGAPGVPGM 184
Query: 188 GAAAVGPTGPRPTGAPPSRRTP-PPGPRRPLRSPHSGSGWTPARPPSP------------ 234
G G G P R P P GP P P G P P
Sbjct: 185 NGQK-GEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEM 243
Query: 235 -PAGAPEALRPP 245
P G P PP
Sbjct: 244 GPIGPPGPQGPP 255
Score = 38.5 bits (88), Expect = 0.008
Identities = 41/145 (28%), Positives = 49/145 (33%), Gaps = 13/145 (8%)
Query: 103 PETLPDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLP-PRGKASGPARDS 161
P + P P T + PY S G +G+ G G G G P P G P S
Sbjct: 28 PTGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGS 87
Query: 162 AQQRRRPTRRPRGTRGGARRPGVRGQGA--AAVGPTGPR----PTGAPPSRRTPPPGPRR 215
+ P +PGV G GP GP+ P G P P GP
Sbjct: 88 PGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLP-----GPRGPPG 142
Query: 216 PLRSPHSGSGWTPARP-PSPPAGAP 239
P P P +P P GAP
Sbjct: 143 PPGIPGPAGISVPGKPGQQGPTGAP 167
Score = 37.4 bits (85), Expect = 0.018
Identities = 40/126 (31%), Positives = 50/126 (39%), Gaps = 22/126 (17%)
Query: 132 GDFGPKGIGMKG-----GGPGLPPR-------GKASGPARDSAQQRRRP----TRRPRGT 175
G+ GP+GIG G G PG+P G A P + P R P G
Sbjct: 256 GERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGL 315
Query: 176 RGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPP 235
GG PG +G+ A P P TG P + P GP + + H G P+ P
Sbjct: 316 PGG---PGAKGEQGPAGLPGKPGLTGPPGN--MGPQGP-KGIPGSHGLPGPKGETGPAGP 369
Query: 236 AGAPEA 241
AG P A
Sbjct: 370 AGYPGA 375
Score = 37.4 bits (85), Expect = 0.018
Identities = 35/108 (32%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GPKGI G PG P+G+ +GPA + + R G+ G PG G
Sbjct: 344 GPQGPKGIPGSHGLPG--PKGE-TGPAGPAGYPGAKGERGSPGSDGKPGYPGKPGLDGPK 400
Query: 192 VGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
P P P G P PPG P+ P G + P GAP
Sbjct: 401 GNPGLPGPKGDPGV--GGPPGLPGPV-GPAGAKGMPGHNGEAGPRGAP 445
Score = 36.6 bits (83), Expect = 0.031
Identities = 34/116 (29%), Positives = 40/116 (34%), Gaps = 2/116 (1%)
Query: 124 LSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPG 183
L G KG+ GP G+ K G G P GP + G G A PG
Sbjct: 315 LPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPG 374
Query: 184 VRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARP-PSPPAGA 238
+G+ + G G P P P P G G P P P PAGA
Sbjct: 375 AKGE-RGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGA 429
Score = 35.0 bits (79), Expect = 0.090
Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 31/120 (25%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
++G GP+G G PG+ RG+ P + G +G PG G
Sbjct: 201 ERGLPGPQGPTGPSGPPGVGKRGENGVPGQP-------------GIKGDRGFPGEMG--- 244
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPA----GAPEALRPP 245
+GP GP+ PPG R P G+ P +P P GAP PP
Sbjct: 245 -PIGPPGPQ----------GPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGIAGPP 293
Score = 33.9 bits (76), Expect = 0.20
Identities = 47/160 (29%), Positives = 56/160 (35%), Gaps = 27/160 (16%)
Query: 111 PLTDSLLAAPYIFLSAGAVQKGDFGPKGI-GMKG--GGPGLPPRGKASG----------P 157
P T L AP I AG FG G+ G+KG G GLP A G P
Sbjct: 278 PGTKGLPGAPGI---AGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKP 334
Query: 158 ARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRP-TGAPPSRRTP-----PP 211
P + P+G G PG +G+ GP GP GA R +P P
Sbjct: 335 GLTGPPGNMGP-QGPKGIPGSHGLPGPKGE----TGPAGPAGYPGAKGERGSPGSDGKPG 389
Query: 212 GPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRA 251
P +P G+ P P G P L P A
Sbjct: 390 YPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGA 429
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 50.4 bits (119), Expect = 2e-06
Identities = 68/246 (27%), Positives = 91/246 (36%), Gaps = 37/246 (15%)
Query: 51 SGAALPTSSPSSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGT------APE 104
+GA P+S +S+S ++L + P R W E L G A E
Sbjct: 53 AGAEGPSSPEASRSPARGAYLQSLEPS---SRRWVLGGAKPAEDTSLGPGVPGTGEPAGE 109
Query: 105 TLPDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPP----RGKASGPARD 160
+P P D AP Q G +G+ +G P PP R K+ GPAR
Sbjct: 110 IWYNPIPEEDPRPPAP----EPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARR 165
Query: 161 -SAQQRRRPTRRPR----GTRGGARRPGVRGQGA--------AAVGPTGPRPTGAPPSRR 207
S + ++ P R R G R G R G+ ++VG GP P P R
Sbjct: 166 LSIKMKKLPELRRRLSLRGPRAGRERERAAPAGSVISRYHLDSSVG--GPGPAAGPGGTR 223
Query: 208 TPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLAWA 267
+P G SP PA PPSP + P + P A A LS GL
Sbjct: 224 SPRAGYLSDGDSPE-----RPAGPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGL 278
Query: 268 GESPAS 273
+P +
Sbjct: 279 RPAPGA 284
Score = 38.5 bits (88), Expect = 0.008
Identities = 41/141 (29%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 151 RGKASGPARDS-AQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAP------ 203
RG+ P + S A++R P +RP + G A A GP+ P + +P
Sbjct: 14 RGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSSPEASRSPARGAYL 73
Query: 204 ----PSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAG-------APEALRPPASTTRAP 252
PS R G +P G G PAG E RPPA P
Sbjct: 74 QSLEPSSRRWVLGGAKPAEDTSLGPG---VPGTGEPAGEIWYNPIPEEDPRPPA--PEPP 128
Query: 253 APLTLSFSARGLAWAGESPAS 273
P S + GLA G +PAS
Sbjct: 129 GPQPGSAESEGLAPQGAAPAS 149
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 50.1 bits (118), Expect = 3e-06
Identities = 71/247 (28%), Positives = 88/247 (35%), Gaps = 29/247 (11%)
Query: 54 ALPTSSPSSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLT 113
A P SP S + R P T P L R + + K LG P L +P+
Sbjct: 14 ASPRGSPCSPTPRKPCRGTQEFSPLCL-RALAFCALAKPRAS--SLGPGPGELAARSPV- 69
Query: 114 DSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPR 173
L P L G G K + G PG+P A+G D A RR
Sbjct: 70 ---LRGPQAPLRPGGWAPD--GLKHLWAPTGRPGVP--NTAAGEDADVAACPRRGEEEEG 122
Query: 174 GTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPR---RPLRSPHSGSGWTPA- 229
G GG GVR P P P + S + PP P P R P + P+
Sbjct: 123 G--GGFPHFGVRSCAPPGRCPAPPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSS 180
Query: 230 RPPSPPAG----------APEALRP--PASTTRAPAPLTLSFSARGLAWAGESPASHQSE 277
RPPSPPAG AP P PA P P A + A +PA+
Sbjct: 181 RPPSPPAGLSTEPAGPGTAPRPFLPGQPAEVDGNPPPAAPEAPAASPSTASPAPAAPGDL 240
Query: 278 RRWQWTR 284
R+ + R
Sbjct: 241 RQEHFDR 247
Score = 30.8 bits (68), Expect = 1.7
Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 145 GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP 204
GP PP A GPAR +A++RR P PR + RRP + P PP
Sbjct: 271 GPERPP---AKGPARGAAKKRRLPAPPPRTAQ--PRRPAPTLPTTSTFSLLNCFP--CPP 323
Query: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPP-----AGAPEALRPP 245
+ G +P S P PP+ P G P PP
Sbjct: 324 ALVVGEDGDLKPASSLRLQGDSKP--PPAHPLWRWQMGGPAVPEPP 367
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 49.7 bits (117), Expect = 4e-06
Identities = 34/104 (32%), Positives = 38/104 (36%)
Query: 142 KGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTG 201
+GG P PP SGP A+ R P P A P + + AV P P
Sbjct: 284 RGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMY 343
Query: 202 APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPP 245
PP P P P P S G P PP PP P PP
Sbjct: 344 PPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPP 387
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/109 (28%), Positives = 39/109 (35%), Gaps = 18/109 (16%)
Query: 149 PPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRT 208
PP GP P P G P RG+GA P P P+
Sbjct: 279 PPPPSRGGP----------PPPPPPPHNSGPPPPPARGRGAP------PPPPSRAPTAAP 322
Query: 209 PPPGPRRPLRS--PHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPL 255
PPP P RP + P + P PP+ P+ AP PP + P+
Sbjct: 323 PPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPV 371
Score = 38.9 bits (89), Expect = 0.006
Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTP-ARPPSPPAGAPEAL--RPPASTTRAP 252
GP P PP PPP P R +P P A PP PP P PP + P
Sbjct: 286 GPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPP 345
Query: 253 APLTLSFSA 261
P L SA
Sbjct: 346 PPPALPSSA 354
Score = 36.2 bits (82), Expect = 0.041
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 194 PTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
P P P+ P PPP P P G G PP PP+ AP A PP +R
Sbjct: 277 PPPPPPSRGGPPPPPPPPHNSGPPPPPARGRG----APPPPPSRAPTAAPPPPPPSR 329
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/83 (28%), Positives = 25/83 (30%), Gaps = 4/83 (4%)
Query: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPS 205
P PP + S R P P P VGP P P PP
Sbjct: 322 PPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPP- 380
Query: 206 RRTPPPGPRRPLRSPHSGSGWTP 228
PPPGP P P G P
Sbjct: 381 ---PPPGPPPPPGLPSDGDHQVP 400
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 49.7 bits (117), Expect = 4e-06
Identities = 40/122 (32%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG- 193
GP G K PP GK GP Q + P P +G + G + QG G
Sbjct: 201 GPPPQGDKSRSSQSPP-GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 259
Query: 194 PTGPRPTGAPPSR--RTPPPGPRRPLRS-------PHSGSGWTPARPPSPPAGAPEA-LR 243
P GP G S+ R+PP P+ P + P +G P +P +PPAG P+ R
Sbjct: 260 PQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPR 319
Query: 244 PP 245
PP
Sbjct: 320 PP 321
Score = 48.9 bits (115), Expect = 6e-06
Identities = 43/140 (30%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG- 193
GP G K P PP GK GP Q + P P +G + G + QG G
Sbjct: 140 GPPPQGDKSRSPRSPP-GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGK 198
Query: 194 PTGPRPTG-------APPSR------------RTPPPGPRRPLRSPHSGSGWTPARPPSP 234
P GP P G +PP + + PPP P +P P G G P PP P
Sbjct: 199 PQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GNKPQGPPPP 257
Query: 235 --PAGAPEALRPPASTTRAP 252
P G P + + R+P
Sbjct: 258 GKPQGPPAQGGSKSQSARSP 277
Score = 47.4 bits (111), Expect = 2e-05
Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 136 PKGIGMKGGG--PGLPPRGKASGPAR--DSAQQRRRPTRRPRGT--RGGARRPGVRGQGA 189
P+G +GG G PP GK GP D ++ R P +P+G +GG + G
Sbjct: 118 PQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 177
Query: 190 AAVGPT---GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPA 246
GP G +P G PP + P P+ P PP P+ PP
Sbjct: 178 KPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPP 237
Query: 247 STTRAPAP 254
+ P P
Sbjct: 238 GKPQGPPP 245
Score = 46.6 bits (109), Expect = 3e-05
Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 127 GAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRG--TRGGARRPGV 184
G +G P+G G G PP+G D ++ R P +P+G +GG + G
Sbjct: 59 GPPPQGGNKPQGPPPPGKPQGPPPQG-------DKSRSPRSPPGKPQGPPPQGGNQPQGP 111
Query: 185 RGQGAAAVGPT---GPRPTGAPPSRRTPPPGPR-RPLRSPHSGSGWTPARPPSPPAGAPE 240
GP G RP G PP + P P+ RSP S G P PP P+
Sbjct: 112 PPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPG-KPQGPPPQGGNQPQ 170
Query: 241 ALRPPASTTRAPAP 254
PP + P P
Sbjct: 171 GPPPPPGKPQGPPP 184
Score = 45.1 bits (105), Expect = 9e-05
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 17/140 (12%)
Query: 127 GAVQKGDFGPKGIGMKGGGPGLPPR-----------GKASGPARDSAQQRRRPTRRPRGT 175
G +G P+G G G PP+ GK GP Q + P P
Sbjct: 120 GPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP 179
Query: 176 RGGARRPGVRGQGAAAVG-PTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP 234
+G + G + QG G P GP P G PPG +P P G G P PP P
Sbjct: 180 QGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG--KPQGPPPQG-GNQPQGPP-P 235
Query: 235 PAGAPEALRPPASTTRAPAP 254
P G P+ PP + P
Sbjct: 236 PPGKPQG-PPPQGGNKPQGP 254
Score = 44.7 bits (104), Expect = 1e-04
Identities = 41/125 (32%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPT 195
P+G G K GP PP GK GP +P+G + G QG + P
Sbjct: 41 PQG-GNKPQGPP-PPPGKPQGPPPQGGN-------KPQGPPPPGKPQGPPPQGDKSRSPR 91
Query: 196 GP--RPTGAPPSR----RTPPPGPRRPLRSPHSGSGWTPARPPSP--PAGAPEALRPPAS 247
P +P G PP + PPP P +P P G G P PP P P G P P
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GNRPQGPPPPGKPQGPP----PQGD 146
Query: 248 TTRAP 252
+R+P
Sbjct: 147 KSRSP 151
Score = 44.3 bits (103), Expect = 1e-04
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQ--QRRRPTRRPRG--TRGGARRPGVRGQGAAA 191
P+G G P PP GK GP Q P +P+G +GG++ R
Sbjct: 224 PQGGNQPQGPP--PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKP 281
Query: 192 VGPTGPRPTGAPPSRRTPPPG--PRRPLRSPHSGSGWTPARPPSPPAGAPEALRPP 245
GP P+ G P PP G P++P ++P +G P PP PP G + RPP
Sbjct: 282 QGP--PQQEGNNPQGPPPPAGGNPQQP-QAPPAGQ---PQGPPRPPQGGRPS-RPP 330
Score = 36.2 bits (82), Expect = 0.041
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
A P GP P G + PPP P +P P G G P P PP G P+ P +R
Sbjct: 33 AGNPQGPSPQGGNKPQGPPPP-PGKPQGPPPQG-GNKPQGP--PPPGKPQGPPPQGDKSR 88
Query: 251 AP 252
+P
Sbjct: 89 SP 90
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 49.7 bits (117), Expect = 4e-06
Identities = 47/135 (34%), Positives = 56/135 (41%), Gaps = 6/135 (4%)
Query: 125 SAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV 184
S + D PK +K G G R S A S ++R++ T PRG R + P
Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETS-PRGRRRRSPSPPP 554
Query: 185 ---RGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPAR-PPSPPAGAPE 240
R + A P R PP RRTP P PRR SP S R PSPP
Sbjct: 555 TRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRT 614
Query: 241 ALRPPASTTRA-PAP 254
A PP RA P+P
Sbjct: 615 ASPPPPPKRRASPSP 629
Score = 40.4 bits (93), Expect = 0.002
Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 150 PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTP 209
PR + S R S ++R P R P R R VR + ++ +G + + R+P
Sbjct: 311 PRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSP 370
Query: 210 PPGPRRPLRSPH------SGSGWTPAR--PPSPPAGAPEALRPPASTTRAPAP 254
P P + SP S S P R PSPPA PP T +P P
Sbjct: 371 PKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPA------TPPPKTRHSPTP 417
Score = 38.9 bits (89), Expect = 0.006
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Query: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP- 204
P PPR ++ P R S +RR + P R A P + A+ P R + +PP
Sbjct: 582 PSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPP 641
Query: 205 -SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARG 263
R +P R P S G +P+R + A +P+ + + + R AP T S
Sbjct: 642 KQRSSPVTKRRSPSLSSKHRKGSSPSR-STREARSPQPNKRHSPSPRPRAPQTSSSPPPV 700
Query: 264 LAWAGESPASHQS 276
A SP QS
Sbjct: 701 RRGASSSPQRRQS 713
Score = 37.4 bits (85), Expect = 0.018
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 25/112 (22%)
Query: 149 PP--RGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGAAAVGPTGPRP------ 199
PP RG +S P Q+R+ P+ R R +R P + + AA+ P R
Sbjct: 698 PPVRRGASSSP-----QRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRS 752
Query: 200 -TGAPPSRRTPPPGPRRPLRSPHSGSGWTPARP----------PSPPAGAPE 240
+G+P PP P P++S + W+PA P PSPP + +
Sbjct: 753 VSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQ 804
Score = 32.7 bits (73), Expect = 0.45
Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 15/130 (11%)
Query: 150 PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTP 209
P K P ++S +++ + RPR R R + P+ RP SR
Sbjct: 254 PEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRS-----PSHTRPRRRHRSRSRS 308
Query: 210 PPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLAWAGE 269
RRP +P R PSP P PP R + +G
Sbjct: 309 YSPRRRP----------SPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGS 358
Query: 270 SPASHQSERR 279
S +S S R
Sbjct: 359 SSSSSSSRSR 368
Score = 32.7 bits (73), Expect = 0.45
Identities = 59/245 (24%), Positives = 89/245 (36%), Gaps = 37/245 (15%)
Query: 50 VSGAALPTSSPSSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAP-ETLPD 108
+SG++ +SS S+S T+SPP R + ++ + T P +T
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHS 414
Query: 109 PAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGG-GPGLPPR------------GKAS 155
P P + + +S G KG + P PR GK +
Sbjct: 415 PTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMA 474
Query: 156 GPARDSAQQRRRPTRRPRGTRGGA--------RRPGVRGQGAAAVGPTGPRPTGAPPSRR 207
A DS QQRR+ R+ + + + RP + G G R +P
Sbjct: 475 --AADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPK---RSHVKNGEVGRRRRHSPSRSA 529
Query: 208 TPPPGPRRPLRSPHSGSGWTPARPPS----PPAGAPEALR------PPASTTRAPAPLTL 257
+P P R+ SP +P+ PP+ P+ AP R PP T +P P
Sbjct: 530 SPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRR 589
Query: 258 SFSAR 262
S S R
Sbjct: 590 SPSPR 594
Score = 32.0 bits (71), Expect = 0.77
Identities = 37/133 (27%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 140 GMKGGGPGLPPRGKASGPARDSAQQRRR-----PTRR-----PRGTRGGARRPGVRGQGA 189
G + P PP + P+ +RRR P RR PR RR Q
Sbjct: 544 GRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603
Query: 190 AAVGPTGPRPTGAPPS--RRTPPPGPRRPLRSPHS------GSGWTPARPPSPPAGAPEA 241
+ P R T +PP +R P P R HS S T R PS + +
Sbjct: 604 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKG 663
Query: 242 LRPPASTTRAPAP 254
P ST A +P
Sbjct: 664 SSPSRSTREARSP 676
Score = 31.2 bits (69), Expect = 1.3
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 153 KASGPARDSAQ-------QRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPS 205
K S P+R + + +R P+ RPR + + P VR R + P
Sbjct: 662 KGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVR------------RGASSSPQ 709
Query: 206 RRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLA 265
RR P RP+R +R P P A P S R + ++S S A
Sbjct: 710 RRQSPSPSTRPIR--------RVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAA 761
Query: 266 WAGESPAS 273
+P S
Sbjct: 762 KKPPAPPS 769
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 48.9 bits (115), Expect = 6e-06
Identities = 45/133 (33%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 127 GAVQKGDFGPKGIGMKGGGPGLP-----------PRGKASGPARDSAQQRRRPTRRPRGT 175
GAV GD P G G P P P G P Q P
Sbjct: 209 GAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPN 268
Query: 176 RGGARRPGVRGQGAA-AVGPTGPRPTGAPPS--RRTPPPGPRRPLRSPHSGSGWTPARPP 232
RG P V G P GP P G PP PPPGP P + P G P RPP
Sbjct: 269 RGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPP 328
Query: 233 SPPAGAPEALRPP 245
P G P L PP
Sbjct: 329 G-PLGPPLTLAPP 340
Score = 45.1 bits (105), Expect = 9e-05
Identities = 35/104 (33%), Positives = 39/104 (37%), Gaps = 18/104 (17%)
Query: 152 GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPP 211
G+ SG + P+G RG R PG G GP GP G P PPP
Sbjct: 178 GQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGP---GGP-----PPP 229
Query: 212 GPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPL 255
P +G TP RPP P G P PP P PL
Sbjct: 230 FP----------AGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL 263
Score = 37.0 bits (84), Expect = 0.024
Identities = 42/144 (29%), Positives = 47/144 (32%), Gaps = 29/144 (20%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGP 194
GP G G PG PP G+ P A R R P + G G GP
Sbjct: 242 GPPG---PPGPPGPPPPGQVLPPPL--AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGP 296
Query: 195 TGP-----RPTGAPPSRRTPPP-------------GPRRPLRSPHSGSGWTPARPPSPPA 236
P P G PP ++ PPP GP L P G P PP P
Sbjct: 297 PPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPH 356
Query: 237 GAPEALRP------PASTTRAPAP 254
P P P S +R P P
Sbjct: 357 VNPAFFPPPTNSGMPTSDSRGPPP 380
Score = 32.3 bits (72), Expect = 0.59
Identities = 31/112 (27%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 134 FGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVG 193
FG +G GP P G P QQ P P R PG G
Sbjct: 284 FGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRP----PGPLGPPLTLAP 339
Query: 194 PTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPP 245
P P G PP P P P + SG + PP P PP
Sbjct: 340 P--PHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPP 389
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 48.9 bits (115), Expect = 6e-06
Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 55 LPTSSPSSQSRRLPSHLTTTSPPWDLFRCWFYRTVTKKEGKLLHLGTAPETLPDPAPLTD 114
LP+ PS P+ +++ PP ++V E + L +PE PAP++
Sbjct: 171 LPSPEPSK-----PASVSSPEPP---------KSVPVCESQKLAPVPSPEP-QKPAPVSP 215
Query: 115 SLLAAPYIFLSAGAVQKGDFGPKGIGM-KGGGPGLP-------PRGKASGPARDSAQQRR 166
+ A LS QK P+ +G P P P G + + +S + R
Sbjct: 216 ESVKAT---LSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSAR 272
Query: 167 RPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRS-PHSGSG 225
+ PR + A + P P P +P S + PPG RP +S P + SG
Sbjct: 273 TTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSG 332
Query: 226 -WTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQS 276
W PA+P P+ +P +P S + P T S S+ + SP+S +S
Sbjct: 333 PWKPAKP--APSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKS 382
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 48.5 bits (114), Expect = 8e-06
Identities = 43/134 (32%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 145 GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP 204
GPG P +A G + + P P+ + A P G GP P AP
Sbjct: 1254 GPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPS---------GSAGPSP--APS 1302
Query: 205 SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGL 264
R PP +P +P S G +PA+PPSP GAP AL PA RA A + +A
Sbjct: 1303 PARQPPAALAKPPGTPPS-LGASPAKPPSP--GAP-ALHVPAKPPRAAAAAAAAAAAPPA 1358
Query: 265 AWAGESPASHQSER 278
G SP ++
Sbjct: 1359 PPEGASPGDSARQK 1372
Score = 35.0 bits (79), Expect = 0.090
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 28/129 (21%)
Query: 142 KGGGPGLPPRGK-ASGPARDSAQ---------QRRRPTRRPRGTRGGARRPGVRGQGAAA 191
+ G P LPP A P D A + R+P + P + +P + QG+
Sbjct: 1185 QAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGS-- 1242
Query: 192 VGPTGPRPTGAPPSRRTPPPGPRRP-LRSPHSGSGWTPARPPSPPAGAPEALR-----PP 245
PT P S++ P PGP P ++ H +PP PP AP+ ++ P
Sbjct: 1243 -------PT--PTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPT-APKPVKAVAGLPS 1292
Query: 246 ASTTRAPAP 254
S +PAP
Sbjct: 1293 GSAGPSPAP 1301
Score = 34.3 bits (77), Expect = 0.15
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 207 RTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAPL 255
R P P PL H+G+G RP S AG PE PP P L
Sbjct: 1157 REAGPEPPPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDL 1205
Score = 33.1 bits (74), Expect = 0.34
Identities = 45/154 (29%), Positives = 58/154 (37%), Gaps = 26/154 (16%)
Query: 146 PGLPPR-GKASGPARDSAQ-----QRRRPTRRPRGTRGGARRPGVRG------------Q 187
PG P G GPA +A+ Q PT RP R + P RG
Sbjct: 785 PGSPQALGGPHGPAPATAKVKPTPQLLPPTERPMSPRSLPQSPTHRGFAYVLPQPVEGEV 844
Query: 188 GAAAVGPTGPRPTGAPPSRRTPPPG---PRRPLRSPHSGSGW--TPARPPSPPAGAPEAL 242
G AA GP P A P+ PP P RP + HS + + + + P P A
Sbjct: 845 GPAAPGPAPPPVPTAVPTLCLPPEADAEPGRPKKRAHSLNRYAASDSEPERDELLVPAAA 904
Query: 243 RPPASTTRAPAPLTLSFSARGLAWAGESPASHQS 276
P A+ R + S S R A A ++ QS
Sbjct: 905 GPYATVQRR---VGRSHSVRAPAGADKNVNRSQS 935
Score = 29.6 bits (65), Expect = 3.8
Identities = 33/119 (27%), Positives = 41/119 (34%), Gaps = 33/119 (27%)
Query: 167 RPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPT---------------GAPPSRRTP-- 209
R T R + GG R Q GP GP G PP P
Sbjct: 687 RATTRQDSSLGGRARHMSSSQELLGDGPPGPSSPMSRSQEYLLDEGPAPGTPPREARPGR 746
Query: 210 ----------PPGPRRPLRS-PHSGSGWTPARPPSPPA-GAPEALRPPASTTRAPAPLT 256
PP P +P + P S +TP + P+ G+P+AL P PAP T
Sbjct: 747 HGHSIKRASVPPVPGKPRQVLPPGTSHFTPPQTPTKTRPGSPQALGGP----HGPAPAT 801
Score = 28.9 bits (63), Expect = 6.5
Identities = 31/126 (24%), Positives = 38/126 (30%), Gaps = 11/126 (8%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPT 195
P+G G PP K A + R + ++ V+ + A
Sbjct: 1100 PRGPSKGEAGVEGPPLAKVEASATLKRRIRAKQNQQENVKFILTESDTVKRRPKAKEREA 1159
Query: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAP--------EALRPPAS 247
GP P PP G R P S P PP PP P L PP
Sbjct: 1160 GPEP---PPPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEG 1216
Query: 248 TTRAPA 253
R PA
Sbjct: 1217 EARKPA 1222
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.8 bits (112), Expect = 1e-05
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G+ GP+G K GG GL GPA + ++ P G+ G PG RG+
Sbjct: 771 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE---- 826
Query: 192 VGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPAST 248
GP GP PP P + G P P P+GAP P T
Sbjct: 827 TGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG--PQGPSGAPGPQGPTGVT 881
Score = 43.9 bits (102), Expect = 2e-04
Identities = 40/120 (33%), Positives = 49/120 (40%), Gaps = 25/120 (20%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLP-PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG 186
A ++G GP+G G PGLP +G P D G +G A PGV+G
Sbjct: 263 AGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD-------------GAKGEAGAPGVKG 309
Query: 187 QGAA-----AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP--PAGAP 239
+ + + GP GPR G P R P R G PA PP P PAG P
Sbjct: 310 ESGSPGENGSPGPMGPR--GLPGERGRTGPAGAAGARGNDGQPG--PAGPPGPVGPAGGP 365
Score = 43.5 bits (101), Expect = 3e-04
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 23/138 (16%)
Query: 130 QKGDFGPKGIGMKGGGPGLP-------PRGKA--SGPARDSAQQRRRPTRRPRGTRGGAR 180
+KG+ GP G G G P P G A +GP Q + + G +G A
Sbjct: 802 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 861
Query: 181 RPGVRGQGAA--------AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPP 232
PG +G A GP G R PP T PG + P S P PP
Sbjct: 862 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPG-ATGFPGAAGRVGPPGSNGNPGPPGPP 920
Query: 233 SP-----PAGAPEALRPP 245
P P GA PP
Sbjct: 921 GPSGKDGPKGARGDSGPP 938
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 24/134 (17%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG--- 186
Q G GP G GGPG P A G A + + + PRG G PG G
Sbjct: 349 QPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 408
Query: 187 ----------QGAA-----AVGPTGPRPTGAP-PSRRTPPPGPRRPLRSP----HSGSGW 226
+G+A A P P P G P P T P GP+ P G
Sbjct: 409 NPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG 468
Query: 227 TPARP-PSPPAGAP 239
P P+ P GAP
Sbjct: 469 PKGEPGPAGPQGAP 482
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/120 (34%), Positives = 46/120 (38%), Gaps = 25/120 (20%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KG+ G G G PG P+G + P Q P+G RG PG G A
Sbjct: 848 KGEQGEAGQKGDAGAPG--PQGPSGAPG----PQGPTGVTGPKGARGAQGPPGATGFPGA 901
Query: 191 A--VGPTG----PRPTGAP-PSRRTPPPGPRRPLRSPHSGSGWTPARPPSP----PAGAP 239
A VGP G P P G P PS + P G R G P R P PAG P
Sbjct: 902 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR--------GDSGPPGRAGEPGLQGPAGPP 953
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/120 (31%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 131 KGDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG 186
+GD GP G + G PGL P G+ P D P P+G G G+ G
Sbjct: 932 RGDSGPPG---RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG-PQGLAGQRGIVGLPG 987
Query: 187 QGAAAVGPTGPRPTGAPPSRRTP-------PPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
Q P P P+G P + P PPGP P +G P R SP A P
Sbjct: 988 QRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP--PGLTGPAGEPGREGSPGADGP 1045
Score = 40.0 bits (92), Expect = 0.003
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KG+ G G+ + G PG GP ++ R G RG +PG G
Sbjct: 299 KGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PG 357
Query: 191 AVGPT-GPRPTGAPPSR-RTPPPGPRRPLRSPHSGSGWTPARPPSP-PAGA 238
VGP GP GAP ++ P G R P G P P SP PAGA
Sbjct: 358 PVGPAGGPGFPGAPGAKGEAGPTGARGP--EGAQGPRGEPGTPGSPGPAGA 406
Score = 38.9 bits (89), Expect = 0.006
Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
GD GP G G PGL +GPA + ++ P G G A G RG+ A
Sbjct: 1014 GDRGPPG---PVGPPGL------TGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 1064
Query: 192 VGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
P P P G+P P GP + +G PS PAGA
Sbjct: 1065 GAPGAPGPPGSP-----GPAGPTGK-QGDRGEAGAQGPMGPSGPAGA 1105
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGAA 190
G GP G G G P + +GP ++ P+G G RPG G GA
Sbjct: 501 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGAR 560
Query: 191 AV----GPTGPR----PTGAPPSRRTP-PPGPR 214
+ G GP+ P+GAP P PPGP+
Sbjct: 561 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ 593
Score = 38.1 bits (87), Expect = 0.011
Identities = 44/139 (31%), Positives = 49/139 (35%), Gaps = 26/139 (18%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP+G+ + G G P G A D P P G GG PG G A
Sbjct: 321 GPMGPRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPG-PVGPAGGPGFPGAPGAKGEA 377
Query: 192 VGPTGPR-PTGAPPSRRTP----PPGPRRPLRSPHS-------GSGWTPA---------- 229
GPTG R P GA R P PGP +P + GS P
Sbjct: 378 -GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 436
Query: 230 RPPSPPAGAPEALRPPAST 248
R P P GA L P T
Sbjct: 437 RGPPGPQGATGPLGPKGQT 455
Score = 37.7 bits (86), Expect = 0.014
Identities = 42/138 (30%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPR----GKAS--GPARDSAQQRRRPTRRPRGTRGGARRPG 183
+ G G KG+ G GLP + G A GPA + ++ + P G +G PG
Sbjct: 613 EPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPG 672
Query: 184 VRGQG-----------AAAVGPTGPRPTGAPPSRRTPP-----PGPRRPLRSPHSGSGWT 227
G+G A A G GPR P R P GPR +P G
Sbjct: 673 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTP----GTD 728
Query: 228 PARPPSPPAGAPEALRPP 245
+ S PAG P A PP
Sbjct: 729 GPKGASGPAGPPGAQGPP 746
Score = 37.4 bits (85), Expect = 0.018
Identities = 31/91 (34%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 128 AVQKGDFGPKGIGMKGGGPG-----LPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRP 182
A G GPKG + G PG + P+G GP + +Q R R +G +G P
Sbjct: 94 ATASGQPGPKG---QKGEPGDIKDIVGPKGPP-GPQGPAGEQGPRGDRGDKGEKGA---P 146
Query: 183 GVRGQGAAAVGPTGPRPTGAPPSRRTPPPGP 213
G RG+ P P P G P PPGP
Sbjct: 147 GPRGRDGEPGTPGNPGPPGPP-----GPPGP 172
Score = 37.0 bits (84), Expect = 0.024
Identities = 40/154 (25%), Positives = 49/154 (31%), Gaps = 39/154 (25%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG---- 186
KGD G G G PG P +GP + + P G G A G++G
Sbjct: 1055 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP 1114
Query: 187 ---QGAAA----------------------VGPTGPRPTGAP--PSRRTPPPGPRRPLRS 219
+G A GP+G + P PS PPGP P
Sbjct: 1115 RGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGK 1174
Query: 220 PHSGSGWTPARPPSP--------PAGAPEALRPP 245
+ P PP P PAG P PP
Sbjct: 1175 DGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1208
Score = 36.6 bits (83), Expect = 0.031
Identities = 35/115 (30%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KG G G+ G PG ASGPA S R P G G + + G G
Sbjct: 1130 KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP------RGPPGPVGPSGKDGANGI-PG 1182
Query: 191 AVGPTGPRPTGAPPSRRTPP--PGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243
+GP GPR PP PGP P P G + P P+ L+
Sbjct: 1183 PIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQ 1237
Score = 36.2 bits (82), Expect = 0.041
Identities = 43/143 (30%), Positives = 54/143 (37%), Gaps = 26/143 (18%)
Query: 130 QKGDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQ-----RRRPTRR-------PR 173
++G G +G+ G PG P P+G ASGPA Q + P R P+
Sbjct: 706 ERGSPGAQGLQGPRGLPGTPGTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 764
Query: 174 GTRGGARRPGVRGQ-----GAAAVGPTG-PRPTGAPPSR-RTPPPGPRRPLRSPHSGSGW 226
G RG G G G GP G P P GA + PPGP + +
Sbjct: 765 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 227 TPARPPSPP--AGAPEALRPPAS 247
PP P AG P A P +
Sbjct: 825 GETGPPGPAGFAGPPGADGQPGA 847
Score = 35.0 bits (79), Expect = 0.090
Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 135 GPKGI-GMKGGGPGLPPRGKASGP--ARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
GP+G G +G L P+G+ P A +Q + P G +G G G+ A
Sbjct: 435 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 494
Query: 192 VGPTGPRPTGAPPSRRTP----------------PPGPRRP--LRSPHSGSGWTPARPPS 233
P G P G P R P PG R P L P +G P RP
Sbjct: 495 GEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANG-DPGRPGE 553
Query: 234 PPAGAPEA 241
P G P A
Sbjct: 554 P--GLPGA 559
Score = 35.0 bits (79), Expect = 0.090
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 131 KGDFGPKGIGMKGGGPGLP-PRGKAS--------GPARDSAQQRRRPTRRPRGTRGGARR 181
+G GP G + G PG P P+G GP + + + + G G
Sbjct: 572 QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGL 631
Query: 182 PGVRGQGAAAVGPTGPR-PTGAPPSRRTPPPGPRRPLRSPHS--GSGWTPARPPSP-PAG 237
PG G+ AA GP GP P G + P P + L P G G P P AG
Sbjct: 632 PGKDGETGAA-GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 690
Query: 238 APEALRP 244
AP + P
Sbjct: 691 APGLVGP 697
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP G G PG P GP S + + R G G A PG++G
Sbjct: 903 GRVGPPG---SNGNPGPP------GPPGPSGKDGPKGARGDSGPPGRAGEPGLQG----P 949
Query: 192 VGPTGPR--PTGAPPSRRTPPPGPR 214
GP G + P PS PPGP+
Sbjct: 950 AGPPGEKGEPGDDGPSGAEGPPGPQ 974
Score = 33.5 bits (75), Expect = 0.26
Identities = 42/132 (31%), Positives = 48/132 (36%), Gaps = 27/132 (20%)
Query: 130 QKGDFGPKG----------IGMKG--------GGPGLPPRGKASGPARDSAQQRRRPTRR 171
Q G GPKG G KG G PGLP +G D+ Q +
Sbjct: 520 QDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK---VG 576
Query: 172 PRGTRGGARRPGVRG-QGA----AAVGPTGPRPTGAPPSRRTPPPGPRRP-LRSPHSGSG 225
P G G RPG G QGA +G GP+ P + P P LR G
Sbjct: 577 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 636
Query: 226 WTPARPPSPPAG 237
T A P PAG
Sbjct: 637 ETGAAGPPGPAG 648
Score = 33.1 bits (74), Expect = 0.34
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGAA 190
G GP G+G + +G A+ Q PRG G A PG +G QG
Sbjct: 168 GPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP 227
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGS-GWTPARPPSPPAGA 238
G G P R PP P +P +G G R P P GA
Sbjct: 228 --GEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGA 274
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.8 bits (112), Expect = 1e-05
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G+ GP+G K GG GL GPA + ++ P G+ G PG RG+
Sbjct: 702 GEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGE---- 757
Query: 192 VGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPAST 248
GP GP PP P + G P P P+GAP P T
Sbjct: 758 TGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPG--PQGPSGAPGPQGPTGVT 812
Score = 43.9 bits (102), Expect = 2e-04
Identities = 40/120 (33%), Positives = 49/120 (40%), Gaps = 25/120 (20%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLP-PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG 186
A ++G GP+G G PGLP +G P D G +G A PGV+G
Sbjct: 194 AGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLD-------------GAKGEAGAPGVKG 240
Query: 187 QGAA-----AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP--PAGAP 239
+ + + GP GPR G P R P R G PA PP P PAG P
Sbjct: 241 ESGSPGENGSPGPMGPR--GLPGERGRTGPAGAAGARGNDGQPG--PAGPPGPVGPAGGP 296
Score = 43.5 bits (101), Expect = 3e-04
Identities = 41/138 (29%), Positives = 49/138 (35%), Gaps = 23/138 (16%)
Query: 130 QKGDFGPKGIGMKGGGPGLP-------PRGKA--SGPARDSAQQRRRPTRRPRGTRGGAR 180
+KG+ GP G G G P P G A +GP Q + + G +G A
Sbjct: 733 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 792
Query: 181 RPGVRGQGAA--------AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPP 232
PG +G A GP G R PP T PG + P S P PP
Sbjct: 793 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPG-ATGFPGAAGRVGPPGSNGNPGPPGPP 851
Query: 233 SP-----PAGAPEALRPP 245
P P GA PP
Sbjct: 852 GPSGKDGPKGARGDSGPP 869
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/134 (30%), Positives = 48/134 (35%), Gaps = 24/134 (17%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG--- 186
Q G GP G GGPG P A G A + + + PRG G PG G
Sbjct: 280 QPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 339
Query: 187 ----------QGAA-----AVGPTGPRPTGAP-PSRRTPPPGPRRPLRSP----HSGSGW 226
+G+A A P P P G P P T P GP+ P G
Sbjct: 340 NPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQG 399
Query: 227 TPARP-PSPPAGAP 239
P P+ P GAP
Sbjct: 400 PKGEPGPAGPQGAP 413
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/120 (34%), Positives = 46/120 (38%), Gaps = 25/120 (20%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KG+ G G G PG P+G + P Q P+G RG PG G A
Sbjct: 779 KGEQGEAGQKGDAGAPG--PQGPSGAPG----PQGPTGVTGPKGARGAQGPPGATGFPGA 832
Query: 191 A--VGPTG----PRPTGAP-PSRRTPPPGPRRPLRSPHSGSGWTPARPPSP----PAGAP 239
A VGP G P P G P PS + P G R G P R P PAG P
Sbjct: 833 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR--------GDSGPPGRAGEPGLQGPAGPP 884
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/120 (31%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 131 KGDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG 186
+GD GP G + G PGL P G+ P D P P+G G G+ G
Sbjct: 863 RGDSGPPG---RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG-PQGLAGQRGIVGLPG 918
Query: 187 QGAAAVGPTGPRPTGAPPSRRTP-------PPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
Q P P P+G P + P PPGP P +G P R SP A P
Sbjct: 919 QRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP--PGLTGPAGEPGREGSPGADGP 976
Score = 40.0 bits (92), Expect = 0.003
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KG+ G G+ + G PG GP ++ R G RG +PG G
Sbjct: 230 KGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP-PG 288
Query: 191 AVGPT-GPRPTGAPPSR-RTPPPGPRRPLRSPHSGSGWTPARPPSP-PAGA 238
VGP GP GAP ++ P G R P G P P SP PAGA
Sbjct: 289 PVGPAGGPGFPGAPGAKGEAGPTGARGP--EGAQGPRGEPGTPGSPGPAGA 337
Score = 38.9 bits (89), Expect = 0.006
Identities = 35/107 (32%), Positives = 43/107 (40%), Gaps = 15/107 (14%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
GD GP G G PGL +GPA + ++ P G G A G RG+ A
Sbjct: 945 GDRGPPG---PVGPPGL------TGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAV 995
Query: 192 VGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
P P P G+P P GP + +G PS PAGA
Sbjct: 996 GAPGAPGPPGSP-----GPAGPTGK-QGDRGEAGAQGPMGPSGPAGA 1036
Score = 38.5 bits (88), Expect = 0.008
Identities = 30/93 (32%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGAA 190
G GP G G G P + +GP ++ P+G G RPG G GA
Sbjct: 432 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGAR 491
Query: 191 AV----GPTGPR----PTGAPPSRRTP-PPGPR 214
+ G GP+ P+GAP P PPGP+
Sbjct: 492 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQ 524
Score = 38.1 bits (87), Expect = 0.011
Identities = 44/139 (31%), Positives = 49/139 (35%), Gaps = 26/139 (18%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP+G+ + G G P G A D P P G GG PG G A
Sbjct: 252 GPMGPRGLPGERGRTG--PAGAAGARGNDGQPGPAGPPG-PVGPAGGPGFPGAPGAKGEA 308
Query: 192 VGPTGPR-PTGAPPSRRTP----PPGPRRPLRSPHS-------GSGWTPA---------- 229
GPTG R P GA R P PGP +P + GS P
Sbjct: 309 -GPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGP 367
Query: 230 RPPSPPAGAPEALRPPAST 248
R P P GA L P T
Sbjct: 368 RGPPGPQGATGPLGPKGQT 386
Score = 37.7 bits (86), Expect = 0.014
Identities = 42/138 (30%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPR----GKAS--GPARDSAQQRRRPTRRPRGTRGGARRPG 183
+ G G KG+ G GLP + G A GPA + ++ + P G +G PG
Sbjct: 544 EPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPG 603
Query: 184 VRGQG-----------AAAVGPTGPRPTGAPPSRRTPP-----PGPRRPLRSPHSGSGWT 227
G+G A A G GPR P R P GPR +P G
Sbjct: 604 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTP----GTD 659
Query: 228 PARPPSPPAGAPEALRPP 245
+ S PAG P A PP
Sbjct: 660 GPKGASGPAGPPGAQGPP 677
Score = 37.0 bits (84), Expect = 0.024
Identities = 40/154 (25%), Positives = 49/154 (31%), Gaps = 39/154 (25%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG---- 186
KGD G G G PG P +GP + + P G G A G++G
Sbjct: 986 KGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGP 1045
Query: 187 ---QGAAA----------------------VGPTGPRPTGAP--PSRRTPPPGPRRPLRS 219
+G A GP+G + P PS PPGP P
Sbjct: 1046 RGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGK 1105
Query: 220 PHSGSGWTPARPPSP--------PAGAPEALRPP 245
+ P PP P PAG P PP
Sbjct: 1106 DGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1139
Score = 36.6 bits (83), Expect = 0.031
Identities = 35/115 (30%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KG G G+ G PG ASGPA S R P G G + + G G
Sbjct: 1061 KGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP------RGPPGPVGPSGKDGANGI-PG 1113
Query: 191 AVGPTGPRPTGAPPSRRTPP--PGPRRPLRSPHSGSGWTPARPPSPPAGAPEALR 243
+GP GPR PP PGP P P G + P P+ L+
Sbjct: 1114 PIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQ 1168
Score = 36.2 bits (82), Expect = 0.041
Identities = 43/143 (30%), Positives = 54/143 (37%), Gaps = 26/143 (18%)
Query: 130 QKGDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQ-----RRRPTRR-------PR 173
++G G +G+ G PG P P+G ASGPA Q + P R P+
Sbjct: 637 ERGSPGAQGLQGPRGLPGTPGTDGPKG-ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPK 695
Query: 174 GTRGGARRPGVRGQ-----GAAAVGPTG-PRPTGAPPSR-RTPPPGPRRPLRSPHSGSGW 226
G RG G G G GP G P P GA + PPGP + +
Sbjct: 696 GDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 227 TPARPPSPP--AGAPEALRPPAS 247
PP P AG P A P +
Sbjct: 756 GETGPPGPAGFAGPPGADGQPGA 778
Score = 35.4 bits (80), Expect = 0.069
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 135 GPKGIGMKGGGPG-----LPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
GPKG + G PG + P+G GP + +Q R R +G +G PG RG+
Sbjct: 32 GPKG---QKGEPGDIKDIVGPKGPP-GPQGPAGEQGPRGDRGDKGEKGA---PGPRGRDG 84
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGP 213
P P P G P PPGP
Sbjct: 85 EPGTPGNPGPPGPP-----GPPGP 103
Score = 35.0 bits (79), Expect = 0.090
Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 135 GPKGI-GMKGGGPGLPPRGKASGP--ARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
GP+G G +G L P+G+ P A +Q + P G +G G G+ A
Sbjct: 366 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 425
Query: 192 VGPTGPRPTGAPPSRRTP----------------PPGPRRP--LRSPHSGSGWTPARPPS 233
P G P G P R P PG R P L P +G P RP
Sbjct: 426 GEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANG-DPGRPGE 484
Query: 234 PPAGAPEA 241
P G P A
Sbjct: 485 P--GLPGA 490
Score = 35.0 bits (79), Expect = 0.090
Identities = 38/127 (29%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 131 KGDFGPKGIGMKGGGPGLP-PRGKAS--------GPARDSAQQRRRPTRRPRGTRGGARR 181
+G GP G + G PG P P+G GP + + + + G G
Sbjct: 503 QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGL 562
Query: 182 PGVRGQGAAAVGPTGPR-PTGAPPSRRTPPPGPRRPLRSPHS--GSGWTPARPPSP-PAG 237
PG G+ AA GP GP P G + P P + L P G G P P AG
Sbjct: 563 PGKDGETGAA-GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAG 621
Query: 238 APEALRP 244
AP + P
Sbjct: 622 APGLVGP 628
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP G G PG P GP S + + R G G A PG++G
Sbjct: 834 GRVGPPG---SNGNPGPP------GPPGPSGKDGPKGARGDSGPPGRAGEPGLQG----P 880
Query: 192 VGPTGPR--PTGAPPSRRTPPPGPR 214
GP G + P PS PPGP+
Sbjct: 881 AGPPGEKGEPGDDGPSGAEGPPGPQ 905
Score = 33.5 bits (75), Expect = 0.26
Identities = 42/132 (31%), Positives = 48/132 (36%), Gaps = 27/132 (20%)
Query: 130 QKGDFGPKG----------IGMKG--------GGPGLPPRGKASGPARDSAQQRRRPTRR 171
Q G GPKG G KG G PGLP +G D+ Q +
Sbjct: 451 QDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK---VG 507
Query: 172 PRGTRGGARRPGVRG-QGA----AAVGPTGPRPTGAPPSRRTPPPGPRRP-LRSPHSGSG 225
P G G RPG G QGA +G GP+ P + P P LR G
Sbjct: 508 PSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDG 567
Query: 226 WTPARPPSPPAG 237
T A P PAG
Sbjct: 568 ETGAAGPPGPAG 579
Score = 33.1 bits (74), Expect = 0.34
Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGAA 190
G GP G+G + +G A+ Q PRG G A PG +G QG
Sbjct: 99 GPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP 158
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGS-GWTPARPPSPPAGA 238
G G P R PP P +P +G G R P P GA
Sbjct: 159 --GEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGA 205
Score = 29.6 bits (65), Expect = 3.8
Identities = 52/196 (26%), Positives = 61/196 (31%), Gaps = 53/196 (27%)
Query: 96 LLHLGTAPETLPDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKG--------IGMKGGGPG 147
++ LG AP+TL L L+AA Q G G KG +G KG PG
Sbjct: 1 MIRLG-APQTLV----LLTLLVAAVLRCQGQDVRQPGPKGQKGEPGDIKDIVGPKGP-PG 54
Query: 148 LPPRGKAS--GPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAP-- 203
P+G A GP D + + PRG G PG G P P P G P
Sbjct: 55 --PQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGP------PGPPGPPGPPGL 106
Query: 204 --------------------------PSRRTPPPGPRRPLRSP-HSGSGWTPARPPSPPA 236
P P GP P +P G P P P
Sbjct: 107 GGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGV 166
Query: 237 GAPEALRPPASTTRAP 252
P R P P
Sbjct: 167 SGPMGPRGPPGPPGKP 182
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 47.8 bits (112), Expect = 1e-05
Identities = 48/163 (29%), Positives = 57/163 (34%), Gaps = 42/163 (25%)
Query: 131 KGDFGPKGIGMKGGGPGLP----------------------PRGKA--------SGPARD 160
+GD GP G+ G PG P P G+A GP D
Sbjct: 1070 RGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQGPRGD 1129
Query: 161 SAQQRRRPTRRPRGTRGGARRPGVRG-------QGAAAV-GPTGPRPTGAP--PSRRTPP 210
R R +G RG G+ G QG+A + GP GPR P PS +
Sbjct: 1130 KGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGN 1189
Query: 211 PGPRRPLRSPHSGSGWTPARPPSPPA--GAPEALRPPASTTRA 251
PGP P+ P A P PP G P PP T A
Sbjct: 1190 PGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAA 1232
Score = 42.7 bits (99), Expect = 4e-04
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
++G GP+G + G G+P + GP G+ G PG++G+
Sbjct: 343 ERGRLGPQGAPGQRGAHGMPGKPGPMGPLGIP------------GSSGFPGNPGMKGE-- 388
Query: 190 AAVGPTGPRPTGAPPSRR--TPPPGPRRPLRSPHS-GSGWTPARPPSPPAGAPEALRPPA 246
GPTG R P +R T PPGP P + G+ TP P G+P PP
Sbjct: 389 --AGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPG--AKGPTGSPGTSGPPG 444
Query: 247 STTRAPAP 254
S +P
Sbjct: 445 SAGPPGSP 452
Score = 42.7 bits (99), Expect = 4e-04
Identities = 32/90 (35%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPAR---DSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
G GP GI G PG P +GP Q +R P G G PG G
Sbjct: 366 GPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTD 425
Query: 189 AA--AVGPTGPRPTGAPPSRRTPP--PGPR 214
A GPTG T PP PP PGP+
Sbjct: 426 GTPGAKGPTGSPGTSGPPGSAGPPGSPGPQ 455
Score = 40.8 bits (94), Expect = 0.002
Identities = 42/128 (32%), Positives = 52/128 (40%), Gaps = 28/128 (21%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ--- 187
+G GP+GI + G PG+P +GP + P G +G PG G+
Sbjct: 455 QGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPG---------PHGIQGPIGPPGEEGKRGP 505
Query: 188 --GAAAVGPTGP-RPTGAPPSRRTPP----PGP------RRPL-RSPHSGSGWTPARPPS 233
VGP GP GAP +R P PGP R P+ S GS P RP
Sbjct: 506 RGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGE 565
Query: 234 PPAGAPEA 241
P G P A
Sbjct: 566 P--GLPGA 571
Score = 40.4 bits (93), Expect = 0.002
Identities = 45/125 (36%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 131 KGDFGPKGIGMKG--------GGPGLP----PRGKASGPARDSAQQRRRPTRRPRGTRGG 178
KGD G GIG KG G GLP P G A GP + + R P G+RG
Sbjct: 776 KGDRG--GIGEKGAEGTAGNDGARGLPGPLGPPGPA-GPTGEKGEPGPRGLVGPPGSRG- 831
Query: 179 ARRPGVRGQG--AAAVGPTGPR-PTGAPPSRRTP-PPGPRRPLRSPHSGSGWTPARPPSP 234
PG RG+ AVG GP+ P G P + P PG + SP G + P
Sbjct: 832 --NPGSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSP-GPQGLAGSPGPHG 888
Query: 235 PAGAP 239
P G P
Sbjct: 889 PNGVP 893
Score = 38.9 bits (89), Expect = 0.006
Identities = 48/148 (32%), Positives = 55/148 (37%), Gaps = 32/148 (21%)
Query: 132 GDFGPKGI----GMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
GD GP G G KG G G P GPA + Q+ RG RG PG
Sbjct: 954 GDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPA 1013
Query: 186 GQGAAAVGPTG-------PRPTGAPPSRRTP--PPGPRRPLRSPHSGSGWTPARPPS--- 233
G VGPTG P P G PP P PGP P +G+ TP R +
Sbjct: 1014 GT-PGKVGPTGATGDKGPPGPVG-PPGSNGPVGEPGPEGP-----AGNDGTPGRDGAVGE 1066
Query: 234 -------PPAGAPEALRPPASTTRAPAP 254
PAG P + P + AP
Sbjct: 1067 RGDRGDPGPAGLPGSQGAPGTPGPVGAP 1094
Score = 38.1 bits (87), Expect = 0.011
Identities = 40/113 (35%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
QKGD G G G PG P G P R T+ P G G PG G+
Sbjct: 868 QKGDAGSPGPQGLAGSPG--PHGPNGVPGLKGG----RGTQGPPGATG---FPGSAGR-- 916
Query: 190 AAVGPTGPRPTGAP-PSRRTPPPGPRRP--LRSPHSGSGWTPARPPSPPAGAP 239
VGP P P GAP P+ PG P LR G R P+ P G P
Sbjct: 917 --VGP--PGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGP 965
Score = 37.7 bits (86), Expect = 0.014
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 138 GIGMKG--GGPGLPP-----RGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
G G KG G PGL P RG+ GPA Q R R P+G G G+ G+
Sbjct: 108 GRGRKGQKGEPGLVPVVTGIRGRP-GPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGV 166
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSG 223
P P P G P P G RP + +G
Sbjct: 167 PGQPGAPGPPGHP--SHPGPDGLSRPFSAQMAG 197
Score = 37.0 bits (84), Expect = 0.024
Identities = 37/129 (28%), Positives = 43/129 (33%), Gaps = 15/129 (11%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG----- 186
G+ G G+ + G PG SGP R + P G G PG G
Sbjct: 630 GEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEG 689
Query: 187 -----QGA----AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP-PA 236
QG AVGP GPR P R P P +G SP P+
Sbjct: 690 GKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGSPGPS 749
Query: 237 GAPEALRPP 245
G P PP
Sbjct: 750 GTPGDTGPP 758
Score = 36.6 bits (83), Expect = 0.031
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP G G K G G+P A GP + R RG G PG +G A
Sbjct: 681 GPPGPPGEGGKPGDQGVPGDPGAVGPL---GPRGERGNPGERGEPGITGLPGEKGM-AGG 736
Query: 192 VGPTGPR----PTGAPPSRRTPPPG 212
GP GP+ P+G P T PPG
Sbjct: 737 HGPDGPKGSPGPSGTPGD--TGPPG 759
Score = 34.7 bits (78), Expect = 0.12
Identities = 38/130 (29%), Positives = 47/130 (36%), Gaps = 17/130 (13%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRP------GVR 185
G GPKG G PG P A G + Q P G G RP G+R
Sbjct: 549 GSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIR 608
Query: 186 GQGAAAVGPTGPRPTGAPPSR-----RTPPPGPRRPLRSPHSGSGWTPARPPSPP--AGA 238
GQ ++G GP+ + P + PG R +P P+ P PP AG
Sbjct: 609 GQ-PGSMGLPGPKGSSGDPGKPGEAGNAGVPGQR---GAPGKDGEVGPSGPVGPPGLAGE 664
Query: 239 PEALRPPAST 248
PP T
Sbjct: 665 RGEQGPPGPT 674
Score = 34.3 bits (77), Expect = 0.15
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 31/140 (22%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTR--GGARRPGVRGQG 188
KG GP+G G PG+P + A GP + RP + G + G+ Q
Sbjct: 149 KGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQV 208
Query: 189 A---AAVGPTGPR-------------PTGAPPSRRTPPP-------GPRRPLRSPHSGSG 225
+VGP GPR PTG P P P GP P P G
Sbjct: 209 GLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKP--GED 266
Query: 226 WTPARPPSPP----AGAPEA 241
P R +P AG+P A
Sbjct: 267 GEPGRNGNPGEVGFAGSPGA 286
Score = 34.3 bits (77), Expect = 0.15
Identities = 41/136 (30%), Positives = 47/136 (34%), Gaps = 16/136 (11%)
Query: 124 LSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPG 183
L G +G G G G G P A GPA + + RG G R G
Sbjct: 895 LKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVG 954
Query: 184 VRGQGAAAVGPTGPRPTGAPPSRRTP----PPGP------RRPLRSP-HSGSGWTPARPP 232
RG A P GP G P P PPGP R + P G P P
Sbjct: 955 DRG---PAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLP- 1010
Query: 233 SPPAGAPEALRPPAST 248
PAG P + P +T
Sbjct: 1011 -GPAGTPGKVGPTGAT 1025
Score = 32.0 bits (71), Expect = 0.77
Identities = 38/134 (28%), Positives = 44/134 (32%), Gaps = 36/134 (26%)
Query: 130 QKGDFGPKGIGMKGGGPGLP----------------------PRGKASGPARDSAQQRRR 167
Q+G+ GP G G PGLP P G A P Q
Sbjct: 403 QRGETGPPG---PVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQG--- 456
Query: 168 PTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTP--PPGPRRPLRSPHSGSG 225
+ P+G RG PGV G G GP+ P + P PPG R P G
Sbjct: 457 -STGPQGIRGQPGDPGVPG----FKGEAGPKGEPGPHGIQGPIGPPG-EEGKRGPRGDPG 510
Query: 226 WTPARPPSPPAGAP 239
P GAP
Sbjct: 511 TVGPPGPVGERGAP 524
Score = 28.9 bits (63), Expect = 6.5
Identities = 44/150 (29%), Positives = 54/150 (36%), Gaps = 45/150 (30%)
Query: 127 GAVQKGDFGPKGI----GMKG--GGPGLP-PRGKASGPARDSAQQRRRPTRRPRGTRGGA 179
GAV G GP+G G +G G GLP +G A G D + + P GT G
Sbjct: 702 GAV--GPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGP----KGSPGPSGTPGDT 755
Query: 180 RRPGVRGQG-----AAAVGPTG----------------------PRPTGAP----PSRRT 208
PG++G A GP G P P G P P+
Sbjct: 756 GPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEK 815
Query: 209 PPPGPRRPLRSPHSGSGWTPARPPSPPAGA 238
PGP R L P G +R + P GA
Sbjct: 816 GEPGP-RGLVGPPGSRGNPGSRGENGPTGA 844
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 47.8 bits (112), Expect = 1e-05
Identities = 56/170 (32%), Positives = 73/170 (42%), Gaps = 41/170 (24%)
Query: 128 AVQKGDFGPK---GIGMKGG----GP--------GLPPRGKASGP---------ARDSAQ 163
AV+ G G + G+G GG GP G+ P A+ P AR SA
Sbjct: 13 AVRGGGAGRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSAL 72
Query: 164 QRRRPTRRPRGTRGGARR-------PGVRGQGAAAV------GPTGPRPTGAPPSRRTPP 210
+P RR G +GG P ++ +GA AV GP RP+ +PP R + P
Sbjct: 73 AAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPS-SPPPRPSLP 131
Query: 211 PGPRRPLRSPHSGSGWTP--ARP-PSPPAGAPEALRPPASTTRAPAPLTL 257
GP RP+ P + + P ARP P A E + P S RA AP L
Sbjct: 132 SGPHRPVLPPSALAAPRPPLARPLPQGSVTAREQEQRPRSRRRAGAPEAL 181
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 47.8 bits (112), Expect = 1e-05
Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 19/133 (14%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRG------------- 177
KG+ G G + G GPGLP R GP+ + PRG G
Sbjct: 1346 KGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDR 1405
Query: 178 GARRPGVRGQGAAAVGPTG-PRPTGAP-PSRRTPPPGPRRPLRSPHSGSGWTPARPPSP- 234
G R P G+G A G G P G+P P PPG + G+ P +P SP
Sbjct: 1406 GERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPG 1465
Query: 235 ---PAGAPEALRP 244
P G P A+ P
Sbjct: 1466 EQGPRGPPGAIGP 1478
Score = 45.8 bits (107), Expect = 5e-05
Identities = 44/129 (34%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KGD G G + G PGLP +GP Q R P G G PG G A
Sbjct: 2137 KGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGL-AG 2195
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP-----PAGAPEALRPP 245
GP GP P T PPG R L P +G+ P PP P P G+P
Sbjct: 2196 PAGPQGPSGLKGEPG-ETGPPG--RGLTGP-TGAVGLPG-PPGPSGLVGPQGSPGLPGQV 2250
Query: 246 ASTTRAPAP 254
T + AP
Sbjct: 2251 GETGKPGAP 2259
Score = 43.5 bits (101), Expect = 3e-04
Identities = 39/119 (32%), Positives = 44/119 (36%), Gaps = 24/119 (20%)
Query: 136 PKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPT 195
P G+KG PGLP GP D + RG RG PG GQ GP
Sbjct: 1319 PGAPGLKGS-PGLP------GPRGDPGE---------RGPRGPKGEPGAPGQVIGGEGPG 1362
Query: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTRAPAP 254
P G P + PPGPR PL P P PP P A + + P P
Sbjct: 1363 LPGRKGDPGP--SGPPGPRGPLGDP------GPRGPPGLPGTAMKGDKGDRGERGPPGP 1413
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 132 GDFGPKGIGMKGGGPGLPPR----GKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ 187
G GP G+ G PGLP + GK P RD A + RG+ G PG+ G
Sbjct: 2230 GPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGD----RGSPGVPGSPGLPGP 2285
Query: 188 GAAAVGPTG-PRPTGAPPSRRTPPPGPRRPLRSPHSGSG 225
VGP G P PTGAP PG + +P +G
Sbjct: 2286 ----VGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAG 2320
Score = 42.4 bits (98), Expect = 6e-04
Identities = 40/113 (35%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGP-ARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA- 189
G GPKG + G PG P R +GP AR+ + R PRG +G PG G+
Sbjct: 1688 GSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGI 1747
Query: 190 -AAVGPTGPR--PTGAPPSRRTPPPGPRRPLRSPHSGSGWTP-ARPPSPPAGA 238
GP GP+ P P+ GP P SG P A PS P GA
Sbjct: 1748 EGFRGPPGPQGDPGVRGPAGEKGDRGP--PGLDGRSGLDGKPGAAGPSGPNGA 1798
Score = 39.7 bits (91), Expect = 0.004
Identities = 42/128 (32%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPG---V 184
A +KG+ GP G G PG+ R A GP PT R +G +G RPG V
Sbjct: 1491 AGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPG-----PTGR-QGEKGEPGRPGDPAV 1544
Query: 185 RGQGAAA-------VGPTGPRPTGAPPSRRTPP----PGPRRPLRSP--HSGSGWTPARP 231
G A VGP GPR R PP PG P P G T
Sbjct: 1545 VGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAG 1604
Query: 232 PSPPAGAP 239
P +G P
Sbjct: 1605 PPGDSGPP 1612
Score = 39.3 bits (90), Expect = 0.005
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 130 QKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA 189
++G GP G+ + G PG+P +G ++ + R R +G RG R
Sbjct: 2023 ERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRD------- 2075
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSG 223
GP G T PP PPGP+ + P G
Sbjct: 2076 ---GPPGLPGTPGPPG----PPGPKVSVDEPGPG 2102
Score = 39.3 bits (90), Expect = 0.005
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
Query: 131 KGDFGPKGIGMKG-----GGPGLPPRGKASGPARDSAQQRRRPT-----RRPRGTRGGAR 180
KGD G G+G+ G G PG+ RG+ P ++ + P R +G G A
Sbjct: 2457 KGDKGDPGVGLPGPRGERGEPGI--RGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAG 2514
Query: 181 RPGVRGQGAAAVGPTGPRPTGAPPSRRTP 209
G +G A +GP GPR R P
Sbjct: 2515 LKGDKGDSAVILGPPGPRGAKGDMGERGP 2543
Score = 38.9 bits (89), Expect = 0.006
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGAA 190
G+ G G+ K G PG P G DS R P+G RG PG+ G QG
Sbjct: 1833 GEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGA---PGILGPQGPP 1889
Query: 191 AV-GPTGPRPTGAP 203
+ GP GP G P
Sbjct: 1890 GLPGPVGPPGQGFP 1903
Score = 37.7 bits (86), Expect = 0.014
Identities = 41/121 (33%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 132 GDFGPKGI----GMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
GD GPKG G+KG G PG PRG+ P + P +P G +G PG
Sbjct: 2123 GDQGPKGDRGVPGIKGDRGEPG--PRGQDGNPGLPGERGMAGPEGKP-GLQGPRGPPGPV 2179
Query: 186 GQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPL-RSPHSGSGWTPARPPSPPAGAPEALRP 244
G G P P GAP P GP+ P G P R + P GA P
Sbjct: 2180 G------GHGDPGPPGAP--GLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGP 2231
Query: 245 P 245
P
Sbjct: 2232 P 2232
Score = 36.6 bits (83), Expect = 0.031
Identities = 38/114 (33%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 130 QKGDFGPKGI-GMKG--GGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG 186
QKG+ G G+ G G G PGLP R A GP + RG G RPG G
Sbjct: 1255 QKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSAT---AKGERGFPGADGRPGSPG 1311
Query: 187 QGAAAVGPTGPRPTGAPPSRRTPP-PGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
+ P GAP + +P PGPR G R P GAP
Sbjct: 1312 RAG------NPGTPGAPGLKGSPGLPGPR-------GDPGERGPRGPKGEPGAP 1352
Score = 36.2 bits (82), Expect = 0.041
Identities = 50/162 (30%), Positives = 59/162 (36%), Gaps = 31/162 (19%)
Query: 106 LPDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKG---GGPGLP-------PRGKAS 155
L DP P L P + +G+ GP G G G G PGLP P+G
Sbjct: 1382 LGDPGPRGPPGL--PGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPV- 1438
Query: 156 GPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA--AAVGPTG----PRPTG-APPSRRT 208
GP ++ P G G PG +G A+GP G P P G A
Sbjct: 1439 GPPGKKGEKGDSEDGAP-GLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGER 1497
Query: 209 PPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
PPGP +GS P P A PE PP T R
Sbjct: 1498 GPPGP--------AGSRGLPGVAGRPGAKGPEG--PPGPTGR 1529
Score = 35.8 bits (81), Expect = 0.053
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA- 190
G GP G+ K G G P +G D + R+ + G G R G +G+ A
Sbjct: 1821 GPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAP 1880
Query: 191 -AVGPTG----PRPTGAPPSRRTPPPGPRRP 216
+GP G P P G P PG P
Sbjct: 1881 GILGPQGPPGLPGPVGPPGQGFPGVPGGTGP 1911
Score = 35.0 bits (79), Expect = 0.090
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 9/119 (7%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA- 189
+G GP+G G PG P G Q R P G +G PG+ G+
Sbjct: 1724 RGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGL 1783
Query: 190 ----AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
A GP+G P GA P LR G P+ PP P E +P
Sbjct: 1784 DGKPGAAGPSG--PNGAAGKAGDPGRDGLPGLRGEQGLPG--PSGPPGLPGKPGEDGKP 1838
Score = 35.0 bits (79), Expect = 0.090
Identities = 40/128 (31%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 132 GDFGPKGIGMKGGGPGL-----PPRGK-ASGPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
G GPK + + GPGL PP K A G + Q + R G +G PG R
Sbjct: 2088 GPPGPK-VSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPR 2146
Query: 186 GQGAAAVGPTGPRPTG-APPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRP 244
GQ P P G A P + GPR P P G G P P +P P +
Sbjct: 2147 GQDG---NPGLPGERGMAGPEGKPGLQGPRGP-PGPVGGHG-DPGPPGAPGLAGPAGPQG 2201
Query: 245 PASTTRAP 252
P+ P
Sbjct: 2202 PSGLKGEP 2209
Score = 34.3 bits (77), Expect = 0.15
Identities = 36/130 (27%), Positives = 46/130 (35%), Gaps = 23/130 (17%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQ 187
A +KGD GP G+ + G G P SGP + + G G PG+RG+
Sbjct: 1766 AGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGK---------AGDPGRDGLPGLRGE 1816
Query: 188 GAAAVGPTGPRPTGAPPSRRTPP--------PGP-----RRPLRSPHSGSGWTPARPPSP 234
GP+GP P P PG R+ + SG P
Sbjct: 1817 -QGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKG 1875
Query: 235 PAGAPEALRP 244
GAP L P
Sbjct: 1876 ERGAPGILGP 1885
Score = 33.5 bits (75), Expect = 0.26
Identities = 33/102 (32%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 127 GAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG 186
G V GD GPKG G GL R +GP DS P G +G RPG G
Sbjct: 1578 GLVLPGDPGPKGDPGDRGPIGLTGR---AGPPGDSG---------PPGEKGDPGRPGPPG 1625
Query: 187 QGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTP 228
VGP G PP P P ++ G P
Sbjct: 1626 ----PVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAP 1663
Score = 32.3 bits (72), Expect = 0.59
Identities = 36/123 (29%), Positives = 43/123 (34%), Gaps = 36/123 (29%)
Query: 128 AVQKGDFGPKGIGMKGGGPG----LPPRGKAS-----GPARDSAQQRRRPTRR------P 172
A KG+ G G+ + G PG + P+G GP D ++ R T P
Sbjct: 2655 AGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGP 2714
Query: 173 RGTRGGARRPGVRG----------QGAAAV-GPTGPRPTGAPPSRRTP----------PP 211
G G A PG G QG GP G R GAP P P
Sbjct: 2715 SGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPA 2774
Query: 212 GPR 214
GPR
Sbjct: 2775 GPR 2777
Score = 32.0 bits (71), Expect = 0.77
Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 11/116 (9%)
Query: 130 QKGDFGPKGIGMKGG-GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
QKG GPKG KG G G+P GP G G + G RG+
Sbjct: 2358 QKGAPGPKGF--KGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGE- 2414
Query: 189 AAAVGPTGPRPTGAPPSRR-----TPPPGPRRPLRSPHSGSGWTPARPPSPPAGAP 239
GP+G R PP R PPGP + P G+ P G P
Sbjct: 2415 MGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPP--GASGLKGDKGDPGVGLP 2468
Score = 31.6 bits (70), Expect = 1.0
Identities = 41/135 (30%), Positives = 47/135 (34%), Gaps = 20/135 (14%)
Query: 108 DPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRR 167
DP P D P I L+ A GD GP G + G PG P GP +
Sbjct: 1584 DPGPKGDPGDRGP-IGLTGRAGPPGDSGPPG---EKGDPGRP---GPPGPVGPRGRDGEV 1636
Query: 168 PTRRPRGTRGGARRPGVRGQ----GAAAV-GPTGPRPTGAPPSR--RTPPPGPRRPLRSP 220
+ G G PG G+ GA V GP G + P R PG P
Sbjct: 1637 GEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGP---- 1692
Query: 221 HSGSGWTPARPPSPP 235
G P PP PP
Sbjct: 1693 -KGDRGEPG-PPGPP 1705
Score = 31.6 bits (70), Expect = 1.0
Identities = 31/97 (31%), Positives = 37/97 (38%), Gaps = 22/97 (22%)
Query: 130 QKGDFGPKGIGMKGGGPGLP----PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
+KGD G G + G PG RG+ P P R +G PG R
Sbjct: 1671 EKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKG------EPGDR 1724
Query: 186 GQGAAAVGPTGPRP----TGAPPSRRTP----PPGPR 214
GQ GP GP+ GAP R PPGP+
Sbjct: 1725 GQ----EGPRGPKGDPGLPGAPGERGIEGFRGPPGPQ 1757
Score = 31.6 bits (70), Expect = 1.0
Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 32/114 (28%)
Query: 142 KGGGPGLPPRGKASGPARDSAQQ----RRRPTRRP--RGTRGGARRPGVRGQGAAAVGPT 195
+ G LP + GP DS +Q + P P RG +G PG +G A+G
Sbjct: 1965 ESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGER 2024
Query: 196 GPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARP-----PSPPAGAPEALRP 244
G PPGP SG P +P P G EA RP
Sbjct: 2025 G-------------PPGP--------SGLAGEPGKPGIPGLPGRAGGVGEAGRP 2057
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 128 AVQKGDFGPKGIGMKGGGPGLPPRGKAS--GPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
AV G GP+G G G PRG GP D+ + ++ G +G A PG+R
Sbjct: 2523 AVILGPPGPRGAKGDMGERG--PRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLR 2580
Query: 186 GQGAAAVGPTG-PRPTGAPPSRRTP 209
G +GP G P G P +P
Sbjct: 2581 G----LLGPQGQPGAAGIPGDPGSP 2601
Score = 30.0 bits (66), Expect = 2.9
Identities = 31/101 (30%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 132 GDFGPKGIGMKGGGPG-----LP--------PRGKASGPARDSAQQRRRPTRRPRGTRGG 178
G GPKG G PG LP P G A + + R PRG +G
Sbjct: 2284 GPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGE 2343
Query: 179 ARRPGVRGQGA--AAVGPTGPRPTGAPPSRRTP----PPGP 213
A R G G G GP+ P P PPGP
Sbjct: 2344 AGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGP 2384
Score = 29.6 bits (65), Expect = 3.8
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 168 PTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPPSRRTP-----------PPGPRRP 216
P P+G +G G+RGQ P P TGAP + P P RP
Sbjct: 1248 PVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRP 1307
Query: 217 LRSPHSGSGWTPARP 231
+G+ TP P
Sbjct: 1308 GSPGRAGNPGTPGAP 1322
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 47.8 bits (112), Expect = 1e-05
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 25/136 (18%)
Query: 135 GPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGV------RGQG 188
GP +G G GPG R P A RR P+ R RP R
Sbjct: 116 GPPFVGPVGFGPG--DRSHLDSPEAREAMFLRRAAVAPQ--RAPILRPAFVPHVLQRADS 171
Query: 189 AAAVGPTGPRPTGAPPSRRT-------PPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEA 241
A + GPRP P + PPGP P+ P AR P PP G+ A
Sbjct: 172 ALSSAAAGPRPMALRPPHQALVGPPLPGPPGP--PMMLPPM------ARAPGPPLGSMAA 223
Query: 242 LRPPASTTRAPAPLTL 257
LRPP AP L L
Sbjct: 224 LRPPLEEPAAPRELGL 239
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 47.4 bits (111), Expect = 2e-05
Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KGD GPKG + G PGL GP + ++ R P+G+ G G+ G +
Sbjct: 1473 KGDSGPKG---EKGHPGLIG---LIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGP-SG 1525
Query: 191 AVGPTGPRPTGAPPSRR-----TPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPP 245
+GP GP PP + + P GP+ + H G P PP PP + L
Sbjct: 1526 PIGPPGPPGLPGPPGPKGAKGSSGPTGPKG--EAGHPG----PPGPPGPPGEVIQPLPIQ 1579
Query: 246 ASTTR 250
AS TR
Sbjct: 1580 ASRTR 1584
Score = 45.8 bits (107), Expect = 5e-05
Identities = 45/136 (33%), Positives = 53/136 (38%), Gaps = 35/136 (25%)
Query: 130 QKGDFGPKGIGMKGGGPGL--PP--RGKASGPARDSAQQRRRP-----------TRRPRG 174
+ G GPKG G G PG PP +GK P R+ P +G
Sbjct: 839 EDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKG 898
Query: 175 TRGGARRPGVRGQGAAAVGPTGPRP-------TGAPPSRRTP-------PPGPRRPLRSP 220
RG +PG RGQ GPTGPR TG P + PPG R P P
Sbjct: 899 GRGTPGKPGPRGQR----GPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGP-NGP 953
Query: 221 HSGSGWT-PARPPSPP 235
+G+ P PP PP
Sbjct: 954 QGPTGFPGPKGPPGPP 969
Score = 44.3 bits (103), Expect = 1e-04
Identities = 40/143 (27%), Positives = 50/143 (34%), Gaps = 10/143 (6%)
Query: 107 PDPAPLTDSLLAAPYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRR 166
P AP D P G G G KG + G PGLP G GP + ++
Sbjct: 1259 PSGAPGADGPQGPP-----GGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGE 1313
Query: 167 ---RPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAP-PSRRTPPPGPRRPLRSPHS 222
P G +G G +G P P P G P P+ + PPG + P
Sbjct: 1314 SGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQ 1373
Query: 223 GSGWTPARPPSPPAGAPEALRPP 245
P P P+G P PP
Sbjct: 1374 TGSPGPTGEPG-PSGPPGKRGPP 1395
Score = 43.5 bits (101), Expect = 3e-04
Identities = 49/152 (32%), Positives = 60/152 (39%), Gaps = 49/152 (32%)
Query: 130 QKGDFGPKG-------IGMKG-----------------GGPGLP-PRGKASGPARDSAQQ 164
QKGD GP+G +G++G G PG P PRG + P D Q
Sbjct: 1211 QKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQG 1270
Query: 165 RRRPTRRP-----RGTRGGARRPGVRGQGAAAVGPTGPR----------PTGA--PPSRR 207
P +G G A PG+ G+G GP GP+ P+GA PP +
Sbjct: 1271 PPGGIGNPGAVGEKGEPGEAGEPGLPGEG----GPPGPKGERGEKGESGPSGAAGPPGPK 1326
Query: 208 TPPPGPRRPLRSPHS-GSGWTPARPPSP-PAG 237
PPG P SP G P P P PAG
Sbjct: 1327 -GPPGDDGPKGSPGPVGFPGDPGPPGEPGPAG 1357
Score = 42.4 bits (98), Expect = 6e-04
Identities = 41/118 (34%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
KGD GP G+ K G PGL G + P G G A PG RG A
Sbjct: 1038 KGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGP-AG 1096
Query: 191 AVGPTG----PRPTGAP-PSRRTPPPGPRRP--------LRSPHSGSGWTPARPPSPP 235
A GP G P P G P P+ PG + P L+ P G PA P PP
Sbjct: 1097 AAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPG--PAGPVGPP 1152
Score = 41.6 bits (96), Expect = 0.001
Identities = 40/132 (30%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 132 GDFGPKG-IGMKGGGPGLPPRGKASGPARDSAQQRRRPT-----RRPRGTRGGARRPGVR 185
G GPKG IG G +G P + + +R PT R PRG G +PG +
Sbjct: 877 GRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITG---KPGPK 933
Query: 186 GQ--GAAAVGPTGPR-------PTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPA 236
G G GP G R PTG P + P P + L G T + + P
Sbjct: 934 GNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPP 993
Query: 237 GAPEALRPPAST 248
G P + P T
Sbjct: 994 GPPGVVGPQGPT 1005
Score = 36.6 bits (83), Expect = 0.031
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRG-QGA 189
KG+ GP G G G P A G QQ + G RG PG G QG
Sbjct: 1173 KGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGL 1232
Query: 190 AAVGPTGPRPTGAPPSRRTP--PPGPRRPLRSPHSGSGWTPARPPSPPAG 237
GP G + + P PPGPR P +P + P PP G
Sbjct: 1233 P--GPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADG------PQGPPGG 1274
Score = 36.2 bits (82), Expect = 0.041
Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 119 APYIFLSAGAVQKGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGG 178
A I A +G GP G+ + G G P G G D Q R + P G G
Sbjct: 546 AQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAG- 604
Query: 179 ARRPGVRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPP 235
+PG RG+ + P TG P R P H G P+ PP PP
Sbjct: 605 --KPGRRGRAGSDGARGMPGQTG-PKGDRGFDGLAGLPGEKGHRGDP-GPSGPPGPP 657
Score = 36.2 bits (82), Expect = 0.041
Identities = 43/153 (28%), Positives = 49/153 (32%), Gaps = 31/153 (20%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G G G K G PG P GP ++ R P G G PG+ G+
Sbjct: 979 GQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTK 1038
Query: 192 --VGPTG-PRPTGAPPSRRTP-------------------PPGPRRPLRSP-------HS 222
GP G P G P R P PPGP P SP +
Sbjct: 1039 GDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAA 1098
Query: 223 GSGWTPAR--PPSPPAGAPEALRPPASTTRAPA 253
G P R P PP A E P + PA
Sbjct: 1099 GPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPA 1131
Score = 36.2 bits (82), Expect = 0.041
Identities = 32/93 (34%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 130 QKGDFGPKGIGMKGGGPGLP-PRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQG 188
+KG GP G G GLP P G P D G +G PG +G
Sbjct: 1124 EKGPQGPAGRDGLQGPVGLPGPAGPVGPPGED-------------GDKGEIGEPGQKGSK 1170
Query: 189 A-----AAVGPTGPR-PTGAP-PSRRTPPPGPR 214
GPTGP+ P G P PS PGPR
Sbjct: 1171 GDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPR 1203
Score = 35.4 bits (80), Expect = 0.069
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
+G GPKG G PG+ GP + Q +G G PG +G
Sbjct: 681 RGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQG---- 736
Query: 191 AVGPTGPR-PTGAPPSRRTP----PPGPRRPLRSPHSGSGWTPARPPSP 234
A+GP G + P G P P PPG P G P P P
Sbjct: 737 AIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP 785
Score = 35.0 bits (79), Expect = 0.090
Identities = 39/122 (31%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 132 GDFGPKG-IGMKG--GGPGLP-PRGKAS--GPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
G GP+G IG G G G P PRG+ G D + P G +G PG +
Sbjct: 1180 GPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEK 1239
Query: 186 GQGA-----AAVGPTGPR-PTGAPPSR--RTPPPGPRRPLRSPHSGSGWTPARPPSPPAG 237
G+ GP GPR P+GAP + + PP G P G P P G
Sbjct: 1240 GETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEG 1299
Query: 238 AP 239
P
Sbjct: 1300 GP 1301
Score = 35.0 bits (79), Expect = 0.090
Identities = 36/118 (30%), Positives = 42/118 (35%), Gaps = 11/118 (9%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGA-- 189
G GP G G PG +G S +R P G G G +G+
Sbjct: 1357 GQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLE 1416
Query: 190 AAVGPTGP-RPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSP-PAGAPEALRPP 245
G TGP P GAP P P R + P G P SP P G P + PP
Sbjct: 1417 GPPGKTGPIGPQGAPGK---PGPDGLRGIPGPVGEQG----LPGSPGPDGPPGPMGPP 1467
Score = 33.9 bits (76), Expect = 0.20
Identities = 39/136 (28%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 131 KGDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAA 190
+G+ GP+GI G PG GPA ++ + P G G PG G+
Sbjct: 918 RGERGPRGIT---GKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGL 974
Query: 191 AVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPAR-------PPSPPA--GAPEA 241
P TG +T PPGP + P +G T PP PP G P
Sbjct: 975 PGHPGQRGETGF--QGKTGPPGPPGVV-GPQGPTGETGPMGERGHPGPPGPPGEQGLP-G 1030
Query: 242 LRPPASTTRAPAPLTL 257
L T P P L
Sbjct: 1031 LAGKEGTKGDPGPAGL 1046
Score = 33.1 bits (74), Expect = 0.34
Identities = 43/142 (30%), Positives = 49/142 (34%), Gaps = 33/142 (23%)
Query: 130 QKGDFGPKGI-GMKG--GGPGLPPRGKASGPARDSAQQRRRPT-----RRPRGTRG--GA 179
+KG G G+ GM G G PG P GK P Q P PRG +G G
Sbjct: 743 EKGPLGKPGLPGMPGADGPPGHP--GKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGI 800
Query: 180 RR-------------PGVRGQ-----GAAAVGPTGPRPTGAP--PSRRTPPPGPRRPLRS 219
R PG +G +GP GPR P P R P G PL
Sbjct: 801 RGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGP 860
Query: 220 P-HSGSGWTPARPPSPPAGAPE 240
P G P P P P+
Sbjct: 861 PGEKGKLGVPGLPGYPGRQGPK 882
Score = 33.1 bits (74), Expect = 0.34
Identities = 34/126 (26%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDS--AQQRRRPTRRPRGTRGGARRPGVRGQGA 189
G+ GP G G PG P+G P +D +R +G G PGV G
Sbjct: 946 GERGPNGPQGPTGFPG--PKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGP-Q 1002
Query: 190 AAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTT 249
G TGP P PP P + G+ P P P LR
Sbjct: 1003 GPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDR 1062
Query: 250 RAPAPL 255
P P+
Sbjct: 1063 GLPGPV 1068
Score = 32.7 bits (73), Expect = 0.45
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 172 PRGTRGGARRPGVRGQGAAAVGPTGPR-PTGAPPSRRTPPPGPRRPL-RSPHSGSGWTPA 229
PRG +G P + G GP GP P G P PPG P + G P
Sbjct: 448 PRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLP-----GPPGTMGPTGQVGDPGERGPPG 502
Query: 230 RPPSPPAGAPEALRPPASTTRAP 252
RP P GA PP + P
Sbjct: 503 RPGLP--GADGLPGPPGTMLMLP 523
Score = 32.7 bits (73), Expect = 0.45
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 132 GDFGPKGIGMKGGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAA 191
G GP+G+ G G P R +G + + RG G A PG +G
Sbjct: 589 GPQGPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGH-RGD 647
Query: 192 VGPTG-PRPTGAPPSRRTP-PPGPRRPLRSPHSGSGWTPARPPSPP 235
GP+G P P G R GPR P P PP PP
Sbjct: 648 PGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPP 693
Score = 31.6 bits (70), Expect = 1.0
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 18/126 (14%)
Query: 132 GDFGPKGIGMKGGGPGLPP----RGKA--SGPARDSAQQRRRPTRRPRGTRGGARRPGVR 185
G GPKG G GLP RG SGP R G RG PG R
Sbjct: 622 GQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPR 681
Query: 186 GQGAAAVGPTGPRPTGAPP--SRRTPPPGPRRPLRSPHSGSGWTPARPPSPPA----GAP 239
G +GP GP PP + PGP+ + G P + +P A G
Sbjct: 682 G----LLGPKGPPGPPGPPGVTGMDGQPGPKGNVGP--QGEPGPPGQQGNPGAQGLPGPQ 735
Query: 240 EALRPP 245
A+ PP
Sbjct: 736 GAIGPP 741
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 47.4 bits (111), Expect = 2e-05
Identities = 47/150 (31%), Positives = 59/150 (39%), Gaps = 31/150 (20%)
Query: 128 AVQKGDFGPK---GIGMKGG----GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGA- 179
AV+ G G + G+G GG GP L G +A P RP R A
Sbjct: 13 AVRGGGAGRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAARLSAL 72
Query: 180 -------RRPGVRGQGAAAVG---PTGPRPTGAP--PSRRTPPPGPRRPLRSPHSGSGWT 227
R PG +G G + P +P GAP P+ +P P P RP P S
Sbjct: 73 AAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPS----- 127
Query: 228 PARPPSPPAGAPEALRP---PASTTRAPAP 254
PPSPP ++ P P R+PAP
Sbjct: 128 ---PPSPPVPTAQSSLPAPWPPQGPRSPAP 154
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 47.4 bits (111), Expect = 2e-05
Identities = 47/154 (30%), Positives = 64/154 (41%), Gaps = 23/154 (14%)
Query: 160 DSAQQR-RRPTRR--PRGTRGGARRPGVRGQGAAAVGPTGPRPTGA--PPSRRTPPPGPR 214
DSA++ RR RR PR R AR VR + PR G+ P S PP P
Sbjct: 693 DSARKGDRRSARRGGPRSWRPSARASWVRSTTPRGPEASSPRARGSFLPKSGGGSPPRPA 752
Query: 215 RPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR---------APAPLTLSFSARGLA 265
R L P +R P AGAPE PP ++R +PAP + +AR
Sbjct: 753 RSLAGP--------SRDDEPLAGAPEEWPPPGLSSRRAPRFLIKSSPAPGRRALAARAAN 804
Query: 266 WAGESPASHQSERRWQWTRKLGCRCYCSPLGSGE 299
A + +H + + + G + +PLG E
Sbjct: 805 HAHVNTLAHSHSYKTNYGPR-GSSSFQAPLGGAE 837
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,608,707
Number of Sequences: 37866
Number of extensions: 1277774
Number of successful extensions: 19754
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 1867
Number of HSP's that attempted gapping in prelim test: 8661
Number of HSP's gapped (non-prelim): 8245
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.