BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|190358536 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a [Homo sapiens] (1028 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 2043 0.0 gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 2043 0.0 gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 2035 0.0 gi|21914927 helicase, lymphoid-specific [Homo sapiens] 337 4e-92 gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 322 9e-88 gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 319 1e-86 gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 313 4e-85 gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 305 2e-82 gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 305 2e-82 gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 305 2e-82 gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 305 2e-82 gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 305 2e-82 gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 305 2e-82 gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 305 2e-82 gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 301 2e-81 gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 301 2e-81 gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 298 2e-80 gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 298 2e-80 gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 277 4e-74 gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 274 3e-73 gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 273 6e-73 gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 273 6e-73 gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 271 3e-72 gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 271 3e-72 gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 271 3e-72 gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 268 1e-71 gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 262 1e-69 gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 249 9e-66 gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 248 2e-65 gi|4557565 excision repair cross-complementing rodent repair def... 241 2e-63 >gi|190358536 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a [Homo sapiens] Length = 1028 Score = 2043 bits (5294), Expect = 0.0 Identities = 1028/1028 (100%), Positives = 1028/1028 (100%) Query: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT Sbjct: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60 Query: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV Sbjct: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120 Query: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL Sbjct: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180 Query: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN Sbjct: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240 Query: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY Sbjct: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300 Query: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY Sbjct: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360 Query: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP Sbjct: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420 Query: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG Sbjct: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480 Query: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540 Query: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600 Query: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660 Query: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720 Query: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780 Query: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840 Query: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL Sbjct: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900 Query: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ Sbjct: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960 Query: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT Sbjct: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020 Query: 1021 LLKTSMGL 1028 LLKTSMGL Sbjct: 1021 LLKTSMGL 1028 >gi|190358532 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a [Homo sapiens] Length = 1028 Score = 2043 bits (5294), Expect = 0.0 Identities = 1028/1028 (100%), Positives = 1028/1028 (100%) Query: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT Sbjct: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60 Query: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV Sbjct: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120 Query: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL Sbjct: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180 Query: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN Sbjct: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240 Query: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY Sbjct: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300 Query: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY Sbjct: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360 Query: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP Sbjct: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420 Query: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG Sbjct: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480 Query: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540 Query: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600 Query: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660 Query: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720 Query: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780 Query: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840 Query: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL Sbjct: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900 Query: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ Sbjct: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960 Query: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT Sbjct: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020 Query: 1021 LLKTSMGL 1028 LLKTSMGL Sbjct: 1021 LLKTSMGL 1028 >gi|190358534 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform b [Homo sapiens] Length = 1026 Score = 2035 bits (5272), Expect = 0.0 Identities = 1026/1028 (99%), Positives = 1026/1028 (99%), Gaps = 2/1028 (0%) Query: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT Sbjct: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60 Query: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV Sbjct: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120 Query: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL Sbjct: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180 Query: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN Sbjct: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240 Query: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY Sbjct: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300 Query: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY Sbjct: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360 Query: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP Sbjct: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420 Query: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG Sbjct: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480 Query: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540 Query: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600 Query: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660 Query: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720 Query: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL EKNTEMCNVMMQL Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCNVMMQL 778 Query: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR Sbjct: 779 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 838 Query: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL Sbjct: 839 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898 Query: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ Sbjct: 899 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958 Query: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT Sbjct: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1018 Query: 1021 LLKTSMGL 1028 LLKTSMGL Sbjct: 1019 LLKTSMGL 1026 >gi|21914927 helicase, lymphoid-specific [Homo sapiens] Length = 838 Score = 337 bits (863), Expect = 4e-92 Identities = 204/544 (37%), Positives = 314/544 (57%), Gaps = 26/544 (4%) Query: 479 NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY 538 NG +QP + ++ YQ G+ WL ++ ++G+NGILADEMGLGKT+Q IA +A Sbjct: 206 NGQPVPFQQPKHFTGGV-MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIAL 264 Query: 539 LYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSR---YE 595 + Q G GP L+ P ST+ NW+ E + P + + Y+G+QEER+++ NI+ R + Sbjct: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQ 324 Query: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 + V++T++ A+ DR+ + Y I DEGH +KNM + L NA+N+LLL Sbjct: 325 IHPVVITSFEIAMR---DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381 Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHA- 711 TGTP+QNNL EL SLLNF++P +F S F + S + I KER + H Sbjct: 382 TGTPLQNNLSELWSLLNFLLPDVFDDLKS-FESWFDITSLSETAEDIIAKEREQNVLHML 440 Query: 712 KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT 771 QI+ PF+LRR+K +V ++PPK++ + +S+KQE Y + NR ++ ++ Sbjct: 441 HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETI 500 Query: 772 EMCNV---MMQLRKMANHPLLHRQYYTAEKLKEMSQLML-KEPTHCEANPDLIFE-DMEV 826 E+ + RK N+ + EKL Q + +E E N + E ++++ Sbjct: 501 ELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKL 560 Query: 827 MTDFELHVLCKQYRHI---------NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVL 877 L C + ++ F++D +L+ +SGKF +L +L ELK++G +V+L Sbjct: 561 QNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLL 620 Query: 878 FSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLG 937 FSQ T MLDIL + RLDG SER + FNTD ++F+FL+ST+AGGLG Sbjct: 621 FSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680 Query: 938 INLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 997 INLT+A+ VI++D D NP +D QA+DRCHR+GQTK V+V +L++ TI++ +++ K Sbjct: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740 Query: 998 KLEQ 1001 KLE+ Sbjct: 741 KLEK 744 >gi|164419749 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform b [Homo sapiens] Length = 1042 Score = 322 bits (826), Expect = 9e-88 Identities = 195/515 (37%), Positives = 288/515 (55%), Gaps = 61/515 (11%) Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555 L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242 Query: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615 T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S Sbjct: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298 Query: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675 +F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++ Sbjct: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358 Query: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735 P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK Sbjct: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411 Query: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795 + +S+ Q + Y + + +N+ + N++MQLRK NHP L Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466 Query: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855 E P + D ++ +S Sbjct: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485 Query: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915 GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER I Sbjct: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAI 545 Query: 916 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974 + FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA DR HR+GQ K V Sbjct: 546 EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 605 Query: 975 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1009 V +LI+ T+EE + + + ++KL D + +G Sbjct: 606 RVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 638 >gi|21071058 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a5 [Homo sapiens] Length = 1052 Score = 319 bits (817), Expect = 1e-86 Identities = 192/506 (37%), Positives = 283/506 (55%), Gaps = 59/506 (11%) Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555 L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L Y+ N GPH+++VP S Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239 Query: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615 T+ NW+ E W PTL+ +C G +E+R ++ E ++V VT+Y I ++S Sbjct: 240 TLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-WDVCVTSYEMLIK---EKS 295 Query: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675 +F++ Y + DE H +KN S + + NRLLLTGTP+QNNL EL SLLNF++ Sbjct: 296 VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLL 355 Query: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735 P +F+S+ + F + D++ + ER+ +++PF+LRR+K +V K LPPKK Sbjct: 356 PDVFNSA-DDFDSWFDTNNCLGDQKLV---ERL---HMVLRPFLLRRIKADVEKSLPPKK 408 Query: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795 + +S+ Q + Y + + +N+ + N++MQLRK NHP L Sbjct: 409 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF----- 463 Query: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855 E P + DM L+ +S Sbjct: 464 ---------------DGAEPGPP--------------------------YTTDMHLVTNS 482 Query: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915 GK VL +L +LK++G RV++FSQ T +LDILE + Y RLDG+T ER I Sbjct: 483 GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI 542 Query: 916 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974 + +N + FVF+LST+AGGLGINL +A+VVIL+D D NP D QA DR HR+GQTK V Sbjct: 543 NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV 602 Query: 975 LVIKLISQGTIEESMLKINQQKLKLE 1000 V + I+ T+EE +++ + KL+L+ Sbjct: 603 RVFRFITDNTVEERIVERAEMKLRLD 628 >gi|21071044 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform a [Homo sapiens] Length = 1054 Score = 313 bits (803), Expect = 4e-85 Identities = 195/527 (37%), Positives = 288/527 (54%), Gaps = 73/527 (13%) Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555 L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242 Query: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615 T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S Sbjct: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298 Query: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675 +F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++ Sbjct: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358 Query: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735 P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK Sbjct: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411 Query: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795 + +S+ Q + Y + + +N+ + N++MQLRK NHP L Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466 Query: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855 E P + D ++ +S Sbjct: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485 Query: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER---- 911 GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER Sbjct: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545 Query: 912 --------IHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 962 I+ FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA Sbjct: 546 LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605 Query: 963 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1009 DR HR+GQ K V V +LI+ T+EE + + + ++KL D + +G Sbjct: 606 DRAHRIGQKKPVRVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 650 >gi|192807323 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform A [Homo sapiens] Length = 1679 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|192807320 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform F [Homo sapiens] Length = 1613 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|192807318 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform E [Homo sapiens] Length = 1614 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|192807316 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform D [Homo sapiens] Length = 1616 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|192807314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform C [Homo sapiens] Length = 1617 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|192807312 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B [Homo sapiens] Length = 1647 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|21071056 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform B [Homo sapiens] Length = 1647 Score = 305 bits (780), Expect = 2e-82 Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182 +P E + + AR I ELE+L S DL+ LK L L + + Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421 Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239 D A+ AL ++ K S E ++ Q I +K R H E Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476 Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295 N + + ++++ V KL K + RE KE+E + E + L E+ Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536 Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355 + + Q + + ++ Y N T+ + K + A+ KK+KK N Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592 Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415 E G D G LDE + + K++H ++ I T P+ Q +A Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642 Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451 E+ P +E S+ +G E+ + K + + E Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700 Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503 D + N +D+ ++ + G + +++ S L + LK YQ Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760 Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562 GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820 Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622 E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++ Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875 Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681 Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935 Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738 ++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + + Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995 Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791 C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP + Sbjct: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051 Query: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851 F+ +E F H+ +DL Sbjct: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075 Query: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911 SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R Sbjct: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135 Query: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970 L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ Sbjct: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195 Query: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238 >gi|48255900 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform a [Homo sapiens] Length = 1590 Score = 301 bits (772), Expect = 2e-81 Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178 +P E + + AR I ELE+L S DL+ LK L F ++ +++ Sbjct: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397 Query: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235 + +T++ A+ + ++ K + E ++ Q I +K R H Sbjct: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448 Query: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291 E N + + ++++ V KL K + RE KE E + E + L Sbjct: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508 Query: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351 E+ + + Q + + ++ Y N T + K + A+ ++R+K Sbjct: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563 Query: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411 K+ E++E G + S+L D GE + E + + G++ P+ K Sbjct: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613 Query: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469 A ++ N + + S E+ ++ QE + I L E++S K Sbjct: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673 Query: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506 KQ+ +M G + +E+ S L + +LK YQ GL Sbjct: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733 Query: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565 W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E + Sbjct: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793 Query: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625 W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y Sbjct: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848 Query: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684 I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S Sbjct: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907 Query: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740 + F++ E+ +E I ++++PF+LRR+K+EV QLP K + + Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967 Query: 741 CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793 C MS Q+ LY + + K + +EK+ + + N +MQLRK+ NHP + + Sbjct: 968 CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023 Query: 794 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853 H E + + + N +L Sbjct: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047 Query: 854 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913 SGKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107 Query: 914 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972 L+ +FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167 Query: 973 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208 >gi|48255898 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b [Homo sapiens] Length = 1572 Score = 301 bits (772), Expect = 2e-81 Identities = 267/941 (28%), Positives = 433/941 (46%), Gaps = 122/941 (12%) Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178 +P E + + AR I ELE+L S DL+ LK L F ++ +++ Sbjct: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397 Query: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235 + +T++ A+ + ++ K + E ++ Q I +K R H Sbjct: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448 Query: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291 E N + + ++++ V KL K + RE KE E + E + L Sbjct: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508 Query: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351 E+ + + Q + + ++ Y N T + K + A+ ++R+K Sbjct: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563 Query: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411 K+ E++E G + S+L D GE + E + + G++ P+ K Sbjct: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613 Query: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469 A ++ N + + S E+ ++ QE + I L E++S K Sbjct: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673 Query: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506 KQ+ +M G + +E+ S L + +LK YQ GL Sbjct: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733 Query: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565 W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E + Sbjct: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793 Query: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625 W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y Sbjct: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848 Query: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684 I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S Sbjct: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907 Query: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740 + F++ E+ +E I ++++PF+LRR+K+EV QLP K + + Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967 Query: 741 CAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHRQY 793 C MS Q+ LY + + K + +EK+ + + N +MQLRK+ NHP + + Sbjct: 968 CDMSALQKILYRHM--QAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ-- 1023 Query: 794 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 853 H E + + + N +L Sbjct: 1024 ------------------HIEES------------------FAEHLGYSNGVINGAELYR 1047 Query: 854 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 913 SGKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R Sbjct: 1048 ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAA 1107 Query: 914 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972 L+ +FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ Sbjct: 1108 LLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQN 1167 Query: 973 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 EV V++L + ++EE +L + KL ++Q + D+ S Sbjct: 1168 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208 >gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sapiens] Length = 1710 Score = 298 bits (763), Expect = 2e-80 Identities = 190/523 (36%), Positives = 282/523 (53%), Gaps = 65/523 (12%) Query: 486 EQPSIL--NQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEG 543 +QPS + ++ L L+ YQ GLNWLA G + ILADEMGLGKTIQ I+FL YL+ E Sbjct: 468 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 527 Query: 544 N-NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED----YN 598 GP L+VVP ST+ +W RE+ W + + Y G R IR + + ++ +N Sbjct: 528 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFN 587 Query: 599 VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGT 658 +++TTY + D++ L + DE H LKN S+ Y+ L+ +N+RLL+TGT Sbjct: 588 ILLTTYEILLK---DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 644 Query: 659 PVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPF 718 P+QN+L EL SLL+F+MP FSS +E + A + ++PF Sbjct: 645 PLQNSLKELWSLLHFIMPEKFSSWED-----------FEEEHGKGREYGYASLHKELEPF 693 Query: 719 ILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMM 778 +LRRVK++V K LP K ++I MS Q+Q Y + R K+++ + N+MM Sbjct: 694 LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMM 753 Query: 779 QLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQ 838 +L+K NH L +K P + E Sbjct: 754 ELKKCCNHCYL-----------------IKPPDNNE------------------------ 772 Query: 839 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 898 N + LI SGK +L +L L+++G+RV++FSQ MLDIL LK+ Q Sbjct: 773 --FYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 830 Query: 899 YLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957 + RLDG + R +D FN + + F FLLST+AGGLGINL SA+ V++ D D NP N Sbjct: 831 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 890 Query: 958 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 1000 D QA+ R HR+GQ K+V + +L+++G++EE +L+ ++K+ L+ Sbjct: 891 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLD 933 >gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1 [Homo sapiens] Length = 1828 Score = 298 bits (762), Expect = 2e-80 Identities = 191/522 (36%), Positives = 286/522 (54%), Gaps = 64/522 (12%) Query: 486 EQPSILN-QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544 +QP+ L ++L L+ YQ GLNWLA + ILADEMGLGKTIQ I+FL+YL+ + Sbjct: 472 KQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 531 Query: 545 -NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN--IHSRYE--DYNV 599 GP LIVVP ST+ +W RE +W P + V+ Y G R IR IHS+ + +N Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591 Query: 600 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659 ++TTY + D+++ + + DE H LKN S+ Y+ L+ +N+RLL+TGTP Sbjct: 592 LITTYEILLK---DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 648 Query: 660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFI 719 +QN+L EL SLL+F+MP F E K + QS++ ++++PF+ Sbjct: 649 LQNSLKELWSLLHFIMPEKF--EFWEDFEEDHGKGRENGYQSLH---------KVLEPFL 697 Query: 720 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQ 779 LRRVK++V K LP K ++I MS Q+Q Y + R K++ + N++M+ Sbjct: 698 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVME 757 Query: 780 LRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQY 839 L+K NH L +K P E Sbjct: 758 LKKCCNHCYL-----------------IKPPEENERE----------------------- 777 Query: 840 RHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRY 899 N ++ + LI SGK +L +L+ L+++G+RV++FSQ MLDIL L + + Sbjct: 778 ---NGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPF 834 Query: 900 LRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYND 958 RLDG + R +D FN D + F FLLST+AGGLGINL SA+ V++ D D NP ND Sbjct: 835 QRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQND 894 Query: 959 KQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 1000 QA+ R HR+GQ K+V + +L+++GT+EE +++ ++K+ L+ Sbjct: 895 LQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 936 Score = 33.1 bits (74), Expect = 1.4 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 21/136 (15%) Query: 211 SSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQES--------IVLKLQKE 262 S S E ++ +D S HG ESN S+ESS + + ES VL KE Sbjct: 31 SDSGSQSESEQGSDPGS------GHGSESNSSSESSESQSESESESAGSKSQPVLPEAKE 84 Query: 263 FPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQYVSQSEVPNGKEVSSRSQN-YPK 321 P K+ + +V K M+ E + V ++ Q S+ + +E SS S++ PK Sbjct: 85 KPASKKERIADVKK----MWEEYPDVYGVRRSNRSRQEPSRFNIK--EEASSGSESGSPK 138 Query: 322 NATKTKLKQKFSMKAQ 337 + +LK++ K + Sbjct: 139 RRGQRQLKKQEKWKQE 154 >gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sapiens] Length = 2997 Score = 277 bits (708), Expect = 4e-74 Identities = 189/530 (35%), Positives = 279/530 (52%), Gaps = 62/530 (11%) Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556 L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL +Y +G +GP L++ P ST Sbjct: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1027 Query: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN-----------IHSRYEDYNVIVTTYN 605 I NW RE W L V+ Y+GSQ R+ I+ I Y+ ++ I+TT+ Sbjct: 1028 IPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFE 1085 Query: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665 ++ + R + + DE H LKN + L ++ +++LLTGTP+QN + Sbjct: 1086 MILTDCPE---LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142 Query: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725 EL SLL+F+ P F S T+ ++ KT+ E++ + I+KP +LRR+KE Sbjct: 1143 ELFSLLHFLEPSRFPSETTFMQEFGDLKTE----------EQVQKLQAILKPMMLRRLKE 1192 Query: 726 EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQLRKMA 784 +V K L PK++ I ++ Q++ Y + + ++ + N + N MM+LRK Sbjct: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCC 1252 Query: 785 NHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINN 844 NHP L EK+ E KE TH +PD Sbjct: 1253 NHPYLING--AEEKILEE----FKE-THNAESPD-------------------------- 1279 Query: 845 FQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDG 904 FQL +I +GK ++ +L +LK G RV++FSQ LDILE L ++ Y R+DG Sbjct: 1280 FQLQA-MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDG 1338 Query: 905 KTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAED 963 + + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND QA+ Sbjct: 1339 RVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQA 1398 Query: 964 RCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013 RCHR+GQ+K V + +LI++ + E M KL L++ + G E + Sbjct: 1399 RCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448 >gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sapiens] Length = 1912 Score = 274 bits (701), Expect = 3e-73 Identities = 180/525 (34%), Positives = 266/525 (50%), Gaps = 76/525 (14%) Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554 +L PYQ GLNWL G + ILADEMGLGKT+Q FL LY+EG++ GP L+ P Sbjct: 725 TLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPL 784 Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 STI NW RE +W P + V+ Y G ++ R IR N S +ED Sbjct: 785 STIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFS-FEDNAIRGGKKASRMKKEASV 843 Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 ++V++T+Y + D ++ + I DE H LKN S ++ L + ++LLL Sbjct: 844 KFHVLLTSYELI---TIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL 900 Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 TGTP+QNNL EL LLNF+ P F + + I ++++I ++ Sbjct: 901 TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF----------ADIAKEDQIKKLHDML 950 Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 P +LRR+K +V K +P K + I +S Q++ Y + R +++N + N Sbjct: 951 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1010 Query: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 V+M L+K NHP L P P + Sbjct: 1011 VVMDLKKCCNHPYLF-------------------PVAAMEAPKM---------------- 1035 Query: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 N LI SGK +L +L LK+ G RV++FSQ T MLD+LE L+H Sbjct: 1036 ------PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHE 1089 Query: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI++D D N Sbjct: 1090 GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1149 Query: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L Sbjct: 1150 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMML 1194 >gi|114326455 chromodomain helicase DNA binding protein 8 [Homo sapiens] Length = 2302 Score = 273 bits (698), Expect = 6e-73 Identities = 182/535 (34%), Positives = 273/535 (51%), Gaps = 70/535 (13%) Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556 L+ YQ G+NWL + N ILADEMGLGKTIQ+IAFL +Y G +GP L++ P ST Sbjct: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591 Query: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDY---------------NVIV 601 I NW RE N W + + Y+GS R+ I+ +YE Y + ++ Sbjct: 592 ITNWEREFNTWTE-MNTIVYHGSLASRQMIQ-----QYEMYCKDSRGRLIPGAYKFDALI 645 Query: 602 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ 661 TT+ +S + R ++ I DE H LKN L ++ +++LLTGTP+Q Sbjct: 646 TTFEMILSDCPE---LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 702 Query: 662 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR 721 N + EL SLL+F+ P F S + ++ KT+ E++ + I+KP +LR Sbjct: 703 NTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE----------EQVQKLQAILKPMMLR 752 Query: 722 RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EMCNVMMQL 780 R+KE+V K L PK++ I ++ Q++ Y + + ++ N + N MM+L Sbjct: 753 RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMEL 812 Query: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840 RK NHP Y +E +E H + DF L + + Sbjct: 813 RKCCNHP------YLINGAEEKILTEFREACHI------------IPHDFHLQAMVRS-- 852 Query: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900 +GK ++ +L +LK G +V++FSQ LDILE L ++ Y Sbjct: 853 --------------AGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYE 898 Query: 901 RLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 959 R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND Sbjct: 899 RIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL 958 Query: 960 QAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1014 QA+ RCHR+GQ+K V V +LI++ + E M KL L++ + G +G++ Sbjct: 959 QAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 1013 >gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sapiens] Length = 2715 Score = 273 bits (698), Expect = 6e-73 Identities = 184/530 (34%), Positives = 274/530 (51%), Gaps = 62/530 (11%) Query: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544 +E+ S L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL+ ++ G Sbjct: 449 LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI 508 Query: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-------- 596 +GP LI+ P STI NW RE W + + Y+GSQ R+ I+ Y D Sbjct: 509 HGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQ-QYEMVYRDAQGNPLSG 566 Query: 597 ---YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653 ++V++TT+ ++ + +++ + I DE H LKN + L + +++ Sbjct: 567 VFKFHVVITTFEMILADCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623 Query: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713 LLTGTP+QN++ EL SLLNF+ P F S T+ + KT+ E++ + Sbjct: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE----------EQVKKLQS 673 Query: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-E 772 I+KP +LRR+K++V K L PK++ I ++ Q++ Y + + + + N Sbjct: 674 ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPN 733 Query: 773 MCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFEL 832 + N MM+LRK NHP L EK+ E + TH PD Sbjct: 734 LINTMMELRKCCNHPYLING--AEEKILEDFR-----KTHSPDAPD-------------- 772 Query: 833 HVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLL 892 FQL +I +GK ++ +L +L G +V++FSQ LDILE L Sbjct: 773 ------------FQLQA-MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL 819 Query: 893 KHHQHRYLRLDGKTQISERIHLIDEF-NTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 951 ++ Y R+DG+ + + R ID F D D FVFLL T+AGGLGINLT+A+ I+ D Sbjct: 820 IQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 879 Query: 952 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 1001 D NP ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++ Sbjct: 880 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929 >gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1 [Homo sapiens] Length = 2000 Score = 271 bits (692), Expect = 3e-72 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%) Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554 +L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P Sbjct: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794 Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 STI NW RE +W P V+ Y G ++ R IR N S +ED Sbjct: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853 Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 ++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL Sbjct: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910 Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960 Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 Query: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 +MM L+K NHP L P +P L E Sbjct: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051 Query: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 LI SGK +L +L +LK++G RV++FSQ T MLD+LE L + Sbjct: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099 Query: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N Sbjct: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159 Query: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L Sbjct: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204 >gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2 [Homo sapiens] Length = 1966 Score = 271 bits (692), Expect = 3e-72 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%) Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554 +L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P Sbjct: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794 Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 STI NW RE +W P V+ Y G ++ R IR N S +ED Sbjct: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853 Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 ++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL Sbjct: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910 Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960 Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020 Query: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 +MM L+K NHP L P +P L E Sbjct: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051 Query: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 LI SGK +L +L +LK++G RV++FSQ T MLD+LE L + Sbjct: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099 Query: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N Sbjct: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159 Query: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L Sbjct: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204 >gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3 [Homo sapiens] Length = 2059 Score = 271 bits (692), Expect = 3e-72 Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 76/525 (14%) Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554 +L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P Sbjct: 794 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 853 Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 STI NW RE +W P V+ Y G ++ R IR N S +ED Sbjct: 854 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 912 Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 ++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL Sbjct: 913 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969 Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 970 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 1019 Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N Sbjct: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079 Query: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 +MM L+K NHP L P +P L E Sbjct: 1080 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1110 Query: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 LI SGK +L +L +LK++G RV++FSQ T MLD+LE L + Sbjct: 1111 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1158 Query: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 ++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N Sbjct: 1159 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1218 Query: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L Sbjct: 1219 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263 >gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sapiens] Length = 2881 Score = 268 bits (686), Expect = 1e-71 Identities = 184/544 (33%), Positives = 277/544 (50%), Gaps = 64/544 (11%) Query: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544 I+Q L+ YQ GLNWL + N ILADEMGLGKTIQ+I FL + G Sbjct: 848 IDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGI 907 Query: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI-RFNIHSRYED------- 596 GP LI+ P STI NW RE W + V+ Y+GS R+ I ++ ++ R Sbjct: 908 RGPFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGA 966 Query: 597 --YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654 + I+TT+ + + ++ I DE H LKN + L +N +++L Sbjct: 967 YRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023 Query: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714 LTGTP+QN + EL SLL+F+ P F S ++ ++ KT +E++ + I Sbjct: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKT----------EEQVQKLQAI 1073 Query: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT-EM 773 +KP +LRR+KE+V K+L PK++ I ++ Q++ Y + + ++ + N + Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133 Query: 774 CNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDM--EVMTDFE 831 N MM+LRK NHP L +K + +L E F D +DF Sbjct: 1134 VNTMMELRKCCNHPYL---------IKGAEEKILGE-----------FRDTYNPAASDFH 1173 Query: 832 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 891 L +I +GK ++ +L ++K G +V++FSQ LDILE Sbjct: 1174 LQA----------------MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 1217 Query: 892 LKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHD 950 L H ++ Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D Sbjct: 1218 LIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1277 Query: 951 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGD 1010 D NP ND QA+ RCHR+GQ K V V +L+++ + E M KL L++ + G Sbjct: 1278 SDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337 Query: 1011 EGSM 1014 E ++ Sbjct: 1338 ESNV 1341 >gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo sapiens] Length = 897 Score = 262 bits (670), Expect = 1e-69 Identities = 182/507 (35%), Positives = 262/507 (51%), Gaps = 63/507 (12%) Query: 495 LSLKPYQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVV 552 + L+ YQ G+NWLA H NG IL DEMGLGKT Q IA YL N+ GP LI+ Sbjct: 44 IHLRSYQLEGVNWLAQ-RFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC 102 Query: 553 PASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSD 612 P S + NW E+ + P L + Y G +EER ++ ++ ++V++TTY + Sbjct: 103 PLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESR-FHVLLTTYEICLK--- 158 Query: 613 DRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLN 672 D S + + + DE H LKN S+ ++ L + LLLTGTP+QN+L EL SLL+ Sbjct: 159 DASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLS 218 Query: 673 FVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLP 732 FV P +FS E F + + +++S E + ++++PF+LRRVK EV +LP Sbjct: 219 FVEPDLFS---KEEVGDFIQRYQDIEKES----ESASELHKLLQPFLLRRVKAEVATELP 271 Query: 733 PKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQ 792 K + + MS Q++ Y + + + N T K ++ N++ QLRK +HP L Sbjct: 272 KKTEVVIYHGMSALQKKYYKAILMKDLDAFEN-ETAKKVKLQNILSQLRKCVDHPYL--- 327 Query: 793 YYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLI 852 F+ +E F++ L Sbjct: 328 ----------------------------FDGVEP----------------EPFEVGDHLT 343 Query: 853 LDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI 912 SGK +L +L+ L G RV+LFSQ T MLDIL+ + + + Y R+DG + ER Sbjct: 344 EASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERH 403 Query: 913 HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 972 I F IFVFLLST+AGG+G+NLT+A+ VI D D NP ND QA R HR+GQ K Sbjct: 404 LAIKNFG-QQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNK 462 Query: 973 EVLVIKLISQGTIEESMLKINQQKLKL 999 V VI+LI + T+EE + + KL+L Sbjct: 463 SVKVIRLIGRDTVEEIVYRKAASKLQL 489 >gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sapiens] Length = 1954 Score = 249 bits (636), Expect = 9e-66 Identities = 172/525 (32%), Positives = 265/525 (50%), Gaps = 76/525 (14%) Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554 +L PYQ GLNWL G + ILADEMGLGKT+Q I FL LY+EG++ GP+L+ P Sbjct: 699 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758 Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596 STI NW RE +W P V+ Y G +E R IR N S +ED Sbjct: 759 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS-FEDNAIRSGKKVFRMKKEVQI 817 Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655 ++V++T+Y + D+++ ++ + DE H LKN S ++ L + + +LLL Sbjct: 818 KFHVLLTSYELI---TIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874 Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715 TGTP+QNNL EL LLNF+ P F++ + I ++++I ++ Sbjct: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 924 Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCN 775 P +LRR+K +V K +P K + I +S+ Q++ Y + R +++N+ + N Sbjct: 925 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984 Query: 776 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 835 +MM L+K NHP L P P L ++ L Sbjct: 985 IMMDLKKCCNHPYLF-------------------PVAAVEAPVL------PNGSYDGSSL 1019 Query: 836 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 895 K + Q + + D G RVL I S++ + D +LE L++ Sbjct: 1020 VKSSGKLMLLQKMLKKLRDEG-HRVL--IFSQMTKMLD-------------LLEDFLEYE 1063 Query: 896 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 954 ++Y R+DG R ID FN F FLLST+AGGLGINL +A+ VI++D D N Sbjct: 1064 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1123 Query: 955 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999 P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L Sbjct: 1124 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168 >gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa [Homo sapiens] Length = 1849 Score = 248 bits (633), Expect = 2e-65 Identities = 185/564 (32%), Positives = 282/564 (50%), Gaps = 80/564 (14%) Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG------ 546 L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q+I LA + QE Sbjct: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325 Query: 547 --PHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVT 602 P L+V P + +W+ EV +C L L Y G ER +++ + + +N+IV Sbjct: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVA 1381 Query: 603 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662 +Y+ +D FR +K NY I DEGH++KN + + + + AN R++L+GTP+QN Sbjct: 1382 SYDVV---RNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438 Query: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIK 716 N+LEL SL +F+MP + R S D +S ++ A +Q++ Sbjct: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL- 1497 Query: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK-----SINNLVTEKNT 771 PF+LRR+KE+VL+ LPPK + C +S Q QLY K ++++ + T Sbjct: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEET 1557 Query: 772 E---------MCNVMMQLRKMANHPLL-----HRQYYT-AEKLKEMSQLMLKEPTHCEAN 816 E + + LRK+ NHP L H ++ T AEKL Sbjct: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL----------------- 1600 Query: 817 PDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVV 876 + + LH + + QL +D L +G G +E R++ Sbjct: 1601 ---------AVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG---TESVVAQHRIL 1648 Query: 877 LFSQFTMMLDILEV-LLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKA 933 +F Q MLDI+E LLK H YLRLDG +R ++ FN D I V LL+T Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708 Query: 934 GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 993 GGLG+NLT A+ V+ + D NP D QA DR HR+GQ + V V +LI++GT+EE ++ + Sbjct: 1709 GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ 1768 Query: 994 QQKLKLEQDMTTVDEGDEGSMPAD 1017 + K+ + + + + SM D Sbjct: 1769 KFKMNIANTVISQENSSLQSMGTD 1792 >gi|4557565 excision repair cross-complementing rodent repair deficiency, complementation group 6 [Homo sapiens] Length = 1493 Score = 241 bits (616), Expect = 2e-63 Identities = 165/512 (32%), Positives = 259/512 (50%), Gaps = 71/512 (13%) Query: 500 YQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-----------YQEGNNGPH 548 YQ+ G+ WL +H GIL DEMGLGKTIQ IAFLA L Y+ GP Sbjct: 510 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 569 Query: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYY--GSQEERKQ--IRFNIHSRYEDYNVIVTTY 604 +IV P + + W++E + W P +V + GS +K+ IR H + +++T+Y Sbjct: 570 VIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHC----HGILITSY 625 Query: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664 + DD S R +Y I DEGH ++N + +R++L+G+P+QNNL Sbjct: 626 SYIRLMQDDIS---RYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNL 682 Query: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHA-----KQIIKPFI 719 EL SL +F+ P + + + T + + + A+ + I P++ Sbjct: 683 RELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYL 742 Query: 720 LRRVKEEVLKQL--PPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVM 777 LRR+K +V L P K +++ C ++++Q ++Y + K + ++ + ++ + + Sbjct: 743 LRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVD--SKEVYRILNGE-MQIFSGL 799 Query: 778 MQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCK 837 + LRK+ NHP L P + + PD E+ Sbjct: 800 IALRKICNHP----------------DLFSGGPKNLKGLPDDELEE-------------D 830 Query: 838 QYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQH 897 Q+ + SGK V+ +L ++G RV+LFSQ MLDILEV L+ ++ Sbjct: 831 QFGYWKR----------SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKY 880 Query: 898 RYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957 YL++DG T I+ R LI +N D IFVFLL+T+ GGLG+NLT AN V+++D D NP Sbjct: 881 TYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPST 940 Query: 958 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESM 989 D QA +R R+GQ K+V V +L++ GTIEE + Sbjct: 941 DTQARERAWRIGQKKQVTVYRLLTAGTIEEKI 972 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.131 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,292,376 Number of Sequences: 37866 Number of extensions: 1684510 Number of successful extensions: 7741 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 202 Number of HSP's that attempted gapping in prelim test: 6936 Number of HSP's gapped (non-prelim): 778 length of query: 1028 length of database: 18,247,518 effective HSP length: 112 effective length of query: 916 effective length of database: 14,006,526 effective search space: 12829977816 effective search space used: 12829977816 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.