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Search of human proteins with 186928847
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|186928847 cirhin [Homo sapiens]
(686 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|186928847 cirhin [Homo sapiens] 1397 0.0
gi|13376840 WD repeat domain 61 [Homo sapiens] 58 3e-08
gi|115298668 WD repeat domain 57 (U5 snRNP specific) [Homo sapiens] 57 4e-08
gi|147904340 WD repeat domain 82 [Homo sapiens] 50 7e-06
gi|19913369 transducin beta-like 3 [Homo sapiens] 50 9e-06
gi|21071067 TBP-associated factor 5 [Homo sapiens] 49 1e-05
gi|34915994 transducin-like enhancer protein 4 [Homo sapiens] 49 2e-05
gi|34485720 echinoderm microtubule associated protein like 5 [Ho... 48 3e-05
gi|83779014 katanin p80 subunit B 1 [Homo sapiens] 47 6e-05
gi|16418439 WD repeat and FYVE domain containing 2 [Homo sapiens] 47 8e-05
gi|5803221 WD repeat-containing protein 3 [Homo sapiens] 46 1e-04
gi|21541824 transducin-like enhancer protein 1 [Homo sapiens] 46 1e-04
gi|59938780 WD repeat domain 31 isoform 1 [Homo sapiens] 45 2e-04
gi|21687048 WD repeat domain 31 isoform 3 [Homo sapiens] 45 2e-04
gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens] 45 2e-04
gi|190684671 mitogen-activated protein kinase binding protein 1 ... 44 4e-04
gi|190684677 mitogen-activated protein kinase binding protein 1 ... 44 4e-04
gi|89886480 zinedin isoform 2 [Homo sapiens] 44 5e-04
gi|89886477 zinedin isoform 1 [Homo sapiens] 44 5e-04
gi|157384986 transducin-like enhancer protein 3 isoform b [Homo ... 44 5e-04
gi|157384984 transducin-like enhancer protein 3 isoform c [Homo ... 44 5e-04
gi|157384982 transducin-like enhancer protein 3 isoform a [Homo ... 44 5e-04
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 44 6e-04
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 44 6e-04
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 44 6e-04
gi|51242945 striatin, calmodulin binding protein [Homo sapiens] 43 0.001
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 42 0.001
gi|5901892 WD repeat and HMG-box DNA binding protein 1 isoform 1... 42 0.001
gi|75677340 WD repeat domain, phosphoinositide interacting 2 iso... 42 0.002
gi|75677331 WD repeat domain, phosphoinositide interacting 2 iso... 42 0.002
>gi|186928847 cirhin [Homo sapiens]
Length = 686
Score = 1397 bits (3617), Expect = 0.0
Identities = 686/686 (100%), Positives = 686/686 (100%)
Query: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
Sbjct: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
Query: 61 RATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGC 120
RATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGC
Sbjct: 61 RATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGC 120
Query: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVH 180
EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVH
Sbjct: 121 EDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVH 180
Query: 181 KMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQ 240
KMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQ
Sbjct: 181 KMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQ 240
Query: 241 SIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTAL 300
SIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTAL
Sbjct: 241 SIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTAL 300
Query: 301 ISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRL 360
ISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRL
Sbjct: 301 ISGGTDTHLVFRPLMEKVEVKNYDAALRKITFPHRCLISCSKKRQLLLFQFAHHLELWRL 360
Query: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNY 420
GSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNY
Sbjct: 361 GSTVATGKNGDTLPLSKNADHLLHLKTKGPENIICSCISPCGSWIAYSTVSRFFLYRLNY 420
Query: 421 EHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQ 480
EHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQ
Sbjct: 421 EHDNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQ 480
Query: 481 SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNN 540
SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNN
Sbjct: 481 SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNN 540
Query: 541 LVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD 600
LVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD
Sbjct: 541 LVIAHSDQQVFEYSIPDKQYTDWSRTVQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD 600
Query: 601 AYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERT 660
AYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERT
Sbjct: 601 AYMFCIIDKSLPLPNDKTLLYNPFPPTNESDVIRRRTAHAFKISKIYKPLLFMDLLDERT 660
Query: 661 LVAVERPLDDIIAQLPPPIKKKKFGT 686
LVAVERPLDDIIAQLPPPIKKKKFGT
Sbjct: 661 LVAVERPLDDIIAQLPPPIKKKKFGT 686
>gi|13376840 WD repeat domain 61 [Homo sapiens]
Length = 305
Score = 57.8 bits (138), Expect = 3e-08
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 41/191 (21%)
Query: 76 SAGLNGEIMEYDLQALNIKYAMDAFGGPI--WSMAASPSGSQLLVGCEDGSVKLFQITPD 133
S+ L+ I +DL+ N K GP+ W++A SP L G G V +F +
Sbjct: 81 SSSLDAHIRLWDLE--NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 138
Query: 134 KIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKM---------- 182
K ++ + D + ILS+++ P G ++A+G+ID I++FD+ +G +H +
Sbjct: 139 KKEY--SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL 196
Query: 183 -------------------IVDRQYMG----VSKRKCIVWGVAFLSDGT-IISVDSAGKV 218
I D Q+ +S V VAF D T +S S V
Sbjct: 197 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSV 256
Query: 219 QFWDSATGTLV 229
+ WD T T V
Sbjct: 257 KVWDVGTRTCV 267
Score = 55.1 bits (131), Expect = 2e-07
Identities = 45/204 (22%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 22 VAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWA-EGQRLFSAGLN 80
+A++ S LA G V I+ + + ++++ + ++ ++ +G+ L S ++
Sbjct: 112 LAFSPDSQYLATGTHVGKVNIFGVESG--KKEYSLDTRGKFILSIAYSPDGKYLASGAID 169
Query: 81 GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERN 140
G I +D+ + + ++ PI S+ SP L+ +DG +K++ +
Sbjct: 170 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV--QHANLAGT 227
Query: 141 FDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVW 199
S +L++++ P TH + S D + V+DV + + VH D Q VW
Sbjct: 228 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQ--------VW 278
Query: 200 GVAFLSDGT-IISVDSAGKVQFWD 222
GV + +G+ I+SV ++ +D
Sbjct: 279 GVKYNGNGSKIVSVGDDQEIHIYD 302
Score = 40.4 bits (93), Expect = 0.005
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 13/187 (6%)
Query: 372 TLPLSKNADHLLHLKTKGPEN---IICSCISPCGSW-IAYSTVSRFFLYRLNYEHDNI-- 425
TLP++ ++ H++ EN I P +W +A+S S++ + NI
Sbjct: 75 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 134
Query: 426 --SLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKHLHAFQPQSGT 483
S K+ + + L I +S D L + G ++I ++ G K LH + +
Sbjct: 135 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMP 192
Query: 484 VEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNLVI 543
+ + L SPD L + + +Y+V+ L T+ + V +A P+ + V
Sbjct: 193 IRS---LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 249
Query: 544 AHSDQQV 550
+ SD+ V
Sbjct: 250 SSSDKSV 256
Score = 38.5 bits (88), Expect = 0.021
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 19 IRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAG 78
I +AY+ LA DG + I++++ GH + Q L +A
Sbjct: 151 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTAS 209
Query: 79 LNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFE 138
+G I YD+Q N+ + + ++A P + + D SVK++ + +
Sbjct: 210 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV-GTRTCVH 268
Query: 139 RNFDRQKSRILSLSWHPSGTHI-AAGSIDYISVFD 172
FD Q ++ + ++ +G+ I + G I ++D
Sbjct: 269 TFFDHQ-DQVWGVKYNGNGSKIVSVGDDQEIHIYD 302
>gi|115298668 WD repeat domain 57 (U5 snRNP specific) [Homo sapiens]
Length = 357
Score = 57.4 bits (137), Expect = 4e-08
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 37 DGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYA 96
DGTV+++++ + F ++ A ++ ++ S G++ +I +DL+ + Y
Sbjct: 173 DGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSD--QIISGGIDNDIKVWDLRQNKLTYT 230
Query: 97 MDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ------FERNFDRQKSRILS 150
M + ++ S GS LL D +V+++ + P + F+ N + +L
Sbjct: 231 MRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLR 290
Query: 151 LSWHPSGTHIAAGSID-YISVFDVKSGSAVHKM 182
SW P G+ IAAGS D ++ V+D S ++K+
Sbjct: 291 CSWSPDGSKIAAGSADRFVYVWDTTSRRILYKL 323
Score = 39.3 bits (90), Expect = 0.012
Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 19 IRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAG 78
+ C ++ + LA + D + ++N+ + GH E +G LFSA
Sbjct: 69 VYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSAS 128
Query: 79 LNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLL-VGCEDGSVKLFQITPD-KIQ 136
+ + +D + + + S + G QL+ G +DG+VKL+ I IQ
Sbjct: 129 TDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQ 188
Query: 137 FERNFDRQKSRILSLSWHPSGTHIAAGSIDY-ISVFDVKSGSAVHKM 182
+N ++L+++++ + I +G ID I V+D++ + M
Sbjct: 189 TFQN----TYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTM 231
>gi|147904340 WD repeat domain 82 [Homo sapiens]
Length = 313
Score = 50.1 bits (118), Expect = 7e-06
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 18/220 (8%)
Query: 18 GIRCVAYNNQSNRLAVS--RTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLF 75
G+ + Y + +N + S + D T+ +L N + ++FPGH R
Sbjct: 65 GVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYI-RYFPGHSKRVVALSMSPVDDTFI 123
Query: 76 SAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITP-DK 134
S L+ I +DL++ N + M G P+ S P G G VKL+ + DK
Sbjct: 124 SGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSF--DPEGLIFAAGVNSEMVKLYDLRSFDK 181
Query: 135 ---IQFERNFDRQKSRILSLSWHPSGTHIAAGSI-DYISVFDVKSGSAVHKMIVDRQYMG 190
F+ +DR L + G I + +I + D G +H + G
Sbjct: 182 GPFATFKMQYDR-TCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMH------TFGG 234
Query: 191 VSKRKCIVWGVAFLSDGTIISVDSA-GKVQFWDSATGTLV 229
+ K + +F D I + S GK+ W+ +G V
Sbjct: 235 YANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKV 274
>gi|19913369 transducin beta-like 3 [Homo sapiens]
Length = 808
Score = 49.7 bits (117), Expect = 9e-06
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 10/149 (6%)
Query: 1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES 60
+G F HR G+ CV ++ LA + DGT++++ L ++ K F GH++
Sbjct: 514 LGVFSGHR--------RGLWCVQFSPMDQVLATASADGTIKLWALQ-DFSCLKTFEGHDA 564
Query: 61 RATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGC 120
+ + G +L S+G +G + + ++ +DA +W + S L G
Sbjct: 565 SVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGA 624
Query: 121 EDGSVKLFQITPDKIQFERNFDRQKSRIL 149
D V L++ + Q E RQ+ +++
Sbjct: 625 SDSRVILWKDVTEAEQAEEQ-ARQEEQVV 652
>gi|21071067 TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 49.3 bits (116), Expect = 1e-05
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 14/261 (5%)
Query: 2 GEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESR 61
G F VR ++ P +R V + + L +D +E + K GH
Sbjct: 487 GGFADSTVRVWSVTPKKLRSVKQASDLS-LIDKESDDVLERIMDEKTASELKILYGHSGP 545
Query: 62 ATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCE 121
A + L S+ +G + + LQ P+W SP G + G
Sbjct: 546 VYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGH 605
Query: 122 DGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVH 180
D +L+ D Q R F + + +HP+ ++A GS D + ++DV +G+ V
Sbjct: 606 DRVARLW--ATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCV- 662
Query: 181 KMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSA-GKVQFWDSATGTLVKSHLIANADV 239
R + G K + + F +G ++ + G+V WD G +V V
Sbjct: 663 -----RIFTG---HKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTV 714
Query: 240 QSIAVADQEDSFVVGTAEGTV 260
S+ + + G+ + TV
Sbjct: 715 CSLRFSRDGEILASGSMDNTV 735
>gi|34915994 transducin-like enhancer protein 4 [Homo sapiens]
Length = 773
Score = 48.5 bits (114), Expect = 2e-05
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
Query: 36 TDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKY 95
+DG + +++L N + F GH A+ +G +L++ GL+ + +DL+ +
Sbjct: 597 SDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQL 654
Query: 96 AMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQIT-PDKIQFERNFDRQKSRILSLSWH 154
F I+S+ P+G L VG E+ +V++ +T PDK Q + +S +LSL +
Sbjct: 655 QQHDFTSQIFSLGYCPTGEWLAVGMENSNVEVLHVTKPDKYQLHLH----ESCVLSLKFA 710
Query: 155 PSGTHIAAGSIDYI----------SVFDVKSGSAVHK--MIVDRQYM--GVSKRKCIVWG 200
G + D + S+F K S+V + VD +Y+ G +K V+
Sbjct: 711 HCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 770
Query: 201 VAF 203
V +
Sbjct: 771 VIY 773
>gi|34485720 echinoderm microtubule associated protein like 5 [Homo
sapiens]
Length = 1977
Score = 48.1 bits (113), Expect = 3e-05
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 57 GHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAF-GGPIWSMAASPSGSQ 115
G + ++C +G+ L N EI+E + ++ GPIW +A PS
Sbjct: 1658 GQATDCVRSVCRGKGKILVGTR-NAEIIEVGEKNAACNILVNGHVDGPIWGLATHPSRDF 1716
Query: 116 LLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKS 175
L EDG+V+L+ I K+ + N ++ + P G +A G +K+
Sbjct: 1717 FLSAAEDGTVRLWDIADKKMLNKVNLGHAAR---TVCYSPEGDMVAIG---------MKN 1764
Query: 176 GSAVHKMIVDRQYMGVSK-RKCIVWGVAFLSDGTIISVDSA-GKVQFWDSATG 226
G + ++ + G + R+C + + F D ++V S+ V F+D G
Sbjct: 1765 GEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRYLAVGSSENSVDFYDLTLG 1817
Score = 35.8 bits (81), Expect = 0.14
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 110 SPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHP-SGTHIAAGSID-Y 167
SP G L VG DGS D ++ +F +K I + + P SG ++A S D +
Sbjct: 1049 SPDGKALAVGLNDGS--FLMANADTLEDLVSFHHRKDMISDIRFSPGSGKYLAVASHDSF 1106
Query: 168 ISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQ-FWDSATG 226
I +++V S V Y+ I W + G ++ V++ K Q F+++ G
Sbjct: 1107 IDIYNVMSSKRVGICKGATSYI-----THIDWDIR----GKLLQVNTGAKEQLFFEAPRG 1157
Query: 227 TLVKSHLIANADVQSIAVA 245
K I + +V+ IA A
Sbjct: 1158 ---KKQTIPSVEVEKIAWA 1173
>gi|83779014 katanin p80 subunit B 1 [Homo sapiens]
Length = 655
Score = 47.0 bits (110), Expect = 6e-05
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 19 IRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAG 78
+RC+ ++ LA + D TV++++L+A +F PGH L S
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEF-PGHTGPVNVVEFHPNEYLLASGS 208
Query: 79 LNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDK 134
+ I +DL+ + ++ GP+ S+ +P G L GC+D S++++ P++
Sbjct: 209 SDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD-SLRVYGWEPER 263
Score = 38.1 bits (87), Expect = 0.027
Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 3/150 (2%)
Query: 17 SGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFS 76
S + V N + G++ +++L A GH++ G+ + S
Sbjct: 64 SPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLM-GHKANICSLDFHPYGEFVAS 122
Query: 77 AGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQ 136
+ I +D++ + + + SP G L +D +VKL+ +T K+
Sbjct: 123 GSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMM 182
Query: 137 FERNFDRQKSRILSLSWHPSGTHIAAGSID 166
E F + + +HP+ +A+GS D
Sbjct: 183 SE--FPGHTGPVNVVEFHPNEYLLASGSSD 210
Score = 37.7 bits (86), Expect = 0.036
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 482 GTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMAIAPNTNNL 541
G +A+ L SPDG WLA++ V ++++ K+ P + PV + PN L
Sbjct: 145 GHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLL 204
Query: 542 VIAHSDQQV 550
SD+ +
Sbjct: 205 ASGSSDRTI 213
Score = 35.4 bits (80), Expect = 0.18
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 57 GHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQL 116
GH S + + + +G I +DL+A I + I S+ P G +
Sbjct: 61 GHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFV 120
Query: 117 LVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDY-ISVFDVKS 175
G +D ++KL+ I F Q R L S P G +A+ + D+ + ++D+ +
Sbjct: 121 ASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFS--PDGKWLASAADDHTVKLWDLTA 178
Query: 176 G 176
G
Sbjct: 179 G 179
>gi|16418439 WD repeat and FYVE domain containing 2 [Homo sapiens]
Length = 400
Score = 46.6 bits (109), Expect = 8e-05
Identities = 40/181 (22%), Positives = 83/181 (45%), Gaps = 21/181 (11%)
Query: 12 FNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQ---EKFFPGHESRATEALCW 68
++ +PS C+++N ++ RL++ +GT+ + LS +Y + K + H+SR T L
Sbjct: 64 YHAMPSPCSCMSFNPETRRLSIGLDNGTISEFILSEDYNKMTPVKNYQAHQSRVTMILFV 123
Query: 69 AEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQ-------LLVGCE 121
E + + S G + + A + + GG + +A SG Q + +G
Sbjct: 124 LELEWVLSTGQDKQF------AWHCSESGQRLGG--YRTSAVASGLQFDVETRHVFIGDH 175
Query: 122 DGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDY-ISVFDV--KSGSA 178
G V + ++ + F + +L W P + +GS D+ + ++D+ + G+A
Sbjct: 176 SGQVTILKLEQENCTLVTTFRGHTGGVTALCWDPVQRVLFSGSSDHSVIMWDIGGRKGTA 235
Query: 179 V 179
+
Sbjct: 236 I 236
>gi|5803221 WD repeat-containing protein 3 [Homo sapiens]
Length = 943
Score = 46.2 bits (108), Expect = 1e-04
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 65 ALC--WAEGQRLFSAGLN-GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCE 121
ALC + G R G G++ YDL + N+ +DA G +WSM+ SP + G
Sbjct: 457 ALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGA 516
Query: 122 DGSVKL--FQITPDKIQFERNFDRQKSR-------ILSLSWHPSGTHIAAGSID-YISVF 171
D SVK F++ D+ ++ +++R +L +S+ P+ +A +D + +F
Sbjct: 517 DKSVKFWDFELVKDENSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIF 576
Query: 172 DVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGK-VQFWDSATGTLVK 230
V + + ++ + K V + DG +I+ SA + V+ W G K
Sbjct: 577 YVDT---------LKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHK 627
Query: 231 SHLIANAD 238
S L A+ D
Sbjct: 628 S-LFAHDD 634
Score = 45.8 bits (107), Expect = 1e-04
Identities = 34/152 (22%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 107 MAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID 166
+ SP G L VG EDGS+++F + + F+ K+ I +L + G +A+GS D
Sbjct: 71 LCPSPDGLHLAVGYEDGSIRIFSLLSG--EGNVTFNGHKAAITTLKYDQLGGRLASGSKD 128
Query: 167 Y-ISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSAT 225
I V+DV + S ++++ + I + +++ V++WD T
Sbjct: 129 TDIIVWDVINESGLYRL--------KGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDT 180
Query: 226 GTLVKSHLIANADVQSIAVADQEDSFVVGTAE 257
K+ + +V + + +E + G ++
Sbjct: 181 QHCFKTMVGHRTEVWGLVLLSEEKRLITGASD 212
Score = 41.6 bits (96), Expect = 0.002
Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 21 CVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLN 80
C+ ++ +A D V+I+ L + F H+ + F+AG +
Sbjct: 596 CMDISHDGALIATGSADRNVKIWGLDFGDCHKSLF-AHDDSVMYLQFVPKSHLFFTAGKD 654
Query: 81 GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQIT--PDKIQFE 138
+I ++D ++ IW +A SPSG ++ D S++L++ T P ++ E
Sbjct: 655 HKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSLRLWERTREPLILEEE 714
Query: 139 RNFDRQ 144
R +R+
Sbjct: 715 REMERE 720
Score = 35.4 bits (80), Expect = 0.18
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 12 FNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNL--SANYFQEKFFPGHESRATEALCWA 69
FN + I + Y+ RLA D + ++++ + ++ K GH+ T+AL
Sbjct: 103 FNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLK---GHKDAITQALFLR 159
Query: 70 EGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQ 129
E L ++G + + +DL + M +W + +L+ G D ++++
Sbjct: 160 EKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELRVWD 219
Query: 130 I 130
I
Sbjct: 220 I 220
Score = 35.4 bits (80), Expect = 0.18
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 206 DGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTV--FHF 263
D ++ GK+Q +D A+G L+++ + + S++++ + FV G A+ +V + F
Sbjct: 466 DRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDF 525
Query: 264 QLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSP 297
+LV +++ ++ V+ DV V++SP
Sbjct: 526 ELVKDENSTQKRLSVKQTRTLQLDEDVLCVSYSP 559
>gi|21541824 transducin-like enhancer protein 1 [Homo sapiens]
Length = 770
Score = 45.8 bits (107), Expect = 1e-04
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 36 TDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKY 95
+DG + +++L N + F GH A+ +G +L++ GL+ + +DL+ +
Sbjct: 594 SDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQL 651
Query: 96 AMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQIT-PDKIQFERNFDRQKSRILSLSWH 154
F I+S+ P+G L VG E +V++ + PDK Q + +S +LSL +
Sbjct: 652 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH----ESCVLSLKFA 707
Query: 155 PSGTHIAAGSIDYI----------SVFDVKSGSAVHK--MIVDRQYM--GVSKRKCIVWG 200
G + D + S+F K S+V + VD +Y+ G +K V+
Sbjct: 708 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 767
Query: 201 VAF 203
V +
Sbjct: 768 VIY 770
>gi|59938780 WD repeat domain 31 isoform 1 [Homo sapiens]
Length = 367
Score = 45.1 bits (105), Expect = 2e-04
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 12/214 (5%)
Query: 3 EFKVHRVRFFNYVPSGIRCVAYNNQSNR-LAVSR-TDGTVEIYNLSANYFQEKFFPGHES 60
E ++ F Y P+ + V+ N L VS D TV YN ++F GHE
Sbjct: 46 EERIQTKAFQEYSPAHMDTVSVVAALNSDLCVSGGKDKTVVAYNWKTGNVVKRF-KGHEH 104
Query: 61 RATEALCWAEGQRLFSAGLNGEIMEYDLQ-ALNIKYAMDAFGGPIWSMAASPSGSQLLVG 119
T+ C + + FSA + +M +DL + + + + +A SP SQL G
Sbjct: 105 EITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQLCTG 164
Query: 120 CEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAV 179
D ++ L+ + Q ++ + L W P +I S D G V
Sbjct: 165 SRDNTLLLWDVVTG--QSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQV 222
Query: 180 HKMIVDRQY------MGVSKRKCIVWGVAFLSDG 207
M +Q+ + V KCI F +G
Sbjct: 223 AHMFPAKQHIQTYCEVSVDGHKCISCSNGFGGEG 256
>gi|21687048 WD repeat domain 31 isoform 3 [Homo sapiens]
Length = 366
Score = 45.1 bits (105), Expect = 2e-04
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 12/214 (5%)
Query: 3 EFKVHRVRFFNYVPSGIRCVAYNNQSNR-LAVSR-TDGTVEIYNLSANYFQEKFFPGHES 60
E ++ F Y P+ + V+ N L VS D TV YN ++F GHE
Sbjct: 45 EERIQTKAFQEYSPAHMDTVSVVAALNSDLCVSGGKDKTVVAYNWKTGNVVKRF-KGHEH 103
Query: 61 RATEALCWAEGQRLFSAGLNGEIMEYDLQ-ALNIKYAMDAFGGPIWSMAASPSGSQLLVG 119
T+ C + + FSA + +M +DL + + + + +A SP SQL G
Sbjct: 104 EITKVACIPKSSQFFSASRDRMVMMWDLHGSSQPRQQLCGHAMVVTGLAVSPDSSQLCTG 163
Query: 120 CEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAV 179
D ++ L+ + Q ++ + L W P +I S D G V
Sbjct: 164 SRDNTLLLWDVVTG--QSVERASVSRNVVTHLCWVPREPYILQTSEDKTLRLWDSRGLQV 221
Query: 180 HKMIVDRQY------MGVSKRKCIVWGVAFLSDG 207
M +Q+ + V KCI F +G
Sbjct: 222 AHMFPAKQHIQTYCEVSVDGHKCISCSNGFGGEG 255
>gi|7657439 PCAF associated factor 65 beta isoform a [Homo sapiens]
Length = 589
Score = 45.1 bits (105), Expect = 2e-04
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 35/229 (15%)
Query: 53 KFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPS 112
K GH A+ L S + I +DL + P+W + SP
Sbjct: 336 KILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPY 395
Query: 113 GSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVF 171
G D + +L+ D+ R + + + + +HP+ ++A GS D + ++
Sbjct: 396 SLYFASGSHDRTARLWSF--DRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLW 453
Query: 172 DVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAG---KVQFWDSATGTL 228
+ G++V R + G + V +AF +G ++ SAG +++ WD A+GTL
Sbjct: 454 SAQQGNSV------RLFTG---HRGPVLSLAFSPNGKYLA--SAGEDQRLKLWDLASGTL 502
Query: 229 VK-----------------SHLIANADV-QSIAVADQEDSFVVGTAEGT 259
K S LIA+A + S+ V D +++ A+G+
Sbjct: 503 YKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADGS 551
Score = 40.0 bits (92), Expect = 0.007
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 19 IRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAG 78
+ CV ++ SN LA TD TV +++ + F GH G+ L SAG
Sbjct: 429 VDCVKFHPNSNYLATGSTDKTVRLWSAQQGN-SVRLFTGHRGPVLSLAFSPNGKYLASAG 487
Query: 79 LNGEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQI 130
+ + +DL + + + I S+ SP + D SV+++ I
Sbjct: 488 EDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDI 539
Score = 32.3 bits (72), Expect = 1.5
Identities = 19/81 (23%), Positives = 37/81 (45%)
Query: 470 SFKHLHAFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLKLHCTVPAYNFPV 529
SF + + +G + + + P+ N+LA T V +++ +Q + PV
Sbjct: 412 SFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPV 471
Query: 530 TAMAIAPNTNNLVIAHSDQQV 550
++A +PN L A DQ++
Sbjct: 472 LSLAFSPNGKYLASAGEDQRL 492
>gi|190684671 mitogen-activated protein kinase binding protein 1
isoform a [Homo sapiens]
Length = 1508
Score = 44.3 bits (103), Expect = 4e-04
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 28/240 (11%)
Query: 1 MGEFKVHRVRFFNYV------PSGIRCVAYNNQSNRL---AVSRTDGTVEIYNLSANYFQ 51
MG +VH ++ + + S I C+ Y+ L A + D + + + Y
Sbjct: 494 MGTLRVHELQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSL 553
Query: 52 EKFFPGHESRATEA-LCWAEGQ-RLFSAGLNGEIMEYDLQALN--IKYAMDAF---GGPI 104
++ H S T ++GQ R+ S G + I Q +++ +
Sbjct: 554 QQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTL 613
Query: 105 WSMAASPSGSQLLVGCEDGSVKLFQITPDK-IQFERNFDRQKSRILSLSWHPSGTHIAAG 163
+ M PS +GC+D ++++F I+ K + + + ++ + PSG +IA
Sbjct: 614 YDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATS 673
Query: 164 SID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSD-GTIISVDSAGKVQFW 221
D +S+FD SG V M + IV G+ F +D +ISV + W
Sbjct: 674 CSDKNLSIFDFSSGECVATMFGHSE---------IVTGMKFSNDCKHLISVSGDSCIFVW 724
>gi|190684677 mitogen-activated protein kinase binding protein 1
isoform b [Homo sapiens]
Length = 1514
Score = 44.3 bits (103), Expect = 4e-04
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 28/240 (11%)
Query: 1 MGEFKVHRVRFFNYV------PSGIRCVAYNNQSNRL---AVSRTDGTVEIYNLSANYFQ 51
MG +VH ++ + + S I C+ Y+ L A + D + + + Y
Sbjct: 500 MGTLRVHELQSLSEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSL 559
Query: 52 EKFFPGHESRATEA-LCWAEGQ-RLFSAGLNGEIMEYDLQALN--IKYAMDAF---GGPI 104
++ H S T ++GQ R+ S G + I Q +++ +
Sbjct: 560 QQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTL 619
Query: 105 WSMAASPSGSQLLVGCEDGSVKLFQITPDK-IQFERNFDRQKSRILSLSWHPSGTHIAAG 163
+ M PS +GC+D ++++F I+ K + + + ++ + PSG +IA
Sbjct: 620 YDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATS 679
Query: 164 SID-YISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSD-GTIISVDSAGKVQFW 221
D +S+FD SG V M + IV G+ F +D +ISV + W
Sbjct: 680 CSDKNLSIFDFSSGECVATMFGHSE---------IVTGMKFSNDCKHLISVSGDSCIFVW 730
>gi|89886480 zinedin isoform 2 [Homo sapiens]
Length = 760
Score = 43.9 bits (102), Expect = 5e-04
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 32/262 (12%)
Query: 18 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEK----------FFPGHESRATEALC 67
GIR +A+++ + L + DGT++++NL +K F H
Sbjct: 447 GIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHRGPVLAVAM 506
Query: 68 WAEGQRLFSAGLNGEIMEYDLQALN-----------IKYAMDAFGGPIWSMAASPSGSQL 116
+ + +S G + I + + L+ + + ++ G +W +A SP+ +L
Sbjct: 507 GSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDPSVLSHVLEGHGDAVWGLAFSPTSQRL 566
Query: 117 LVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGT---HIAAG--SIDYISVF 171
DG+V+++ + F + S + T HI A S D + ++
Sbjct: 567 ASCSADGTVRIWDPSSSSPACLCTFPTASEHGVPTSVAFTSTEPAHIVASFRSGDTV-LY 625
Query: 172 DVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKS 231
D++ GSA ++ + G S I V+ + I+ ++F D+ TG V S
Sbjct: 626 DMEVGSA----LLTLESRGSSGPTQINQVVSHPNQPLTITAHDDRGIRFLDNRTGKPVHS 681
Query: 232 HLIANADVQSIAVADQEDSFVV 253
++A+ D + D +F++
Sbjct: 682 -MVAHLDAVTCLAVDPNGAFLM 702
>gi|89886477 zinedin isoform 1 [Homo sapiens]
Length = 753
Score = 43.9 bits (102), Expect = 5e-04
Identities = 53/262 (20%), Positives = 107/262 (40%), Gaps = 32/262 (12%)
Query: 18 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEK----------FFPGHESRATEALC 67
GIR +A+++ + L + DGT++++NL +K F H
Sbjct: 440 GIRSLAFHHSQSALLTASEDGTLKLWNLQKAVTAKKNAALDVEPIHAFRAHRGPVLAVAM 499
Query: 68 WAEGQRLFSAGLNGEIMEYDLQALN-----------IKYAMDAFGGPIWSMAASPSGSQL 116
+ + +S G + I + + L+ + + ++ G +W +A SP+ +L
Sbjct: 500 GSNSEYCYSGGADACIHSWKIPDLSMDPYDGYDPSVLSHVLEGHGDAVWGLAFSPTSQRL 559
Query: 117 LVGCEDGSVKLFQITPDKIQFERNFDRQKSRILSLSWHPSGT---HIAAG--SIDYISVF 171
DG+V+++ + F + S + T HI A S D + ++
Sbjct: 560 ASCSADGTVRIWDPSSSSPACLCTFPTASEHGVPTSVAFTSTEPAHIVASFRSGDTV-LY 618
Query: 172 DVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTIISVDSAGKVQFWDSATGTLVKS 231
D++ GSA ++ + G S I V+ + I+ ++F D+ TG V S
Sbjct: 619 DMEVGSA----LLTLESRGSSGPTQINQVVSHPNQPLTITAHDDRGIRFLDNRTGKPVHS 674
Query: 232 HLIANADVQSIAVADQEDSFVV 253
++A+ D + D +F++
Sbjct: 675 -MVAHLDAVTCLAVDPNGAFLM 695
>gi|157384986 transducin-like enhancer protein 3 isoform b [Homo
sapiens]
Length = 769
Score = 43.9 bits (102), Expect = 5e-04
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 36 TDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKY 95
+DG + +++L N + F GH A+ +G +L++ GL+ + +DL+ +
Sbjct: 593 SDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLRE-GRQL 650
Query: 96 AMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQIT-PDKIQFERNFDRQKSRILSLSWH 154
F I+S+ P+G L VG E +V++ T PDK Q + +S +LSL +
Sbjct: 651 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLH----ESCVLSLKFA 706
Query: 155 PSGTHIAAGSIDYI----------SVFDVKSGSAVHK--MIVDRQYM--GVSKRKCIVWG 200
G + D + S+F K S+V + D +Y+ G +K V+
Sbjct: 707 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYE 766
Query: 201 VAF 203
V +
Sbjct: 767 VIY 769
>gi|157384984 transducin-like enhancer protein 3 isoform c [Homo
sapiens]
Length = 760
Score = 43.9 bits (102), Expect = 5e-04
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 36 TDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKY 95
+DG + +++L N + F GH A+ +G +L++ GL+ + +DL+ +
Sbjct: 584 SDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLRE-GRQL 641
Query: 96 AMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQIT-PDKIQFERNFDRQKSRILSLSWH 154
F I+S+ P+G L VG E +V++ T PDK Q + +S +LSL +
Sbjct: 642 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLH----ESCVLSLKFA 697
Query: 155 PSGTHIAAGSIDYI----------SVFDVKSGSAVHK--MIVDRQYM--GVSKRKCIVWG 200
G + D + S+F K S+V + D +Y+ G +K V+
Sbjct: 698 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYE 757
Query: 201 VAF 203
V +
Sbjct: 758 VIY 760
>gi|157384982 transducin-like enhancer protein 3 isoform a [Homo
sapiens]
Length = 772
Score = 43.9 bits (102), Expect = 5e-04
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 36 TDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEYDLQALNIKY 95
+DG + +++L N + F GH A+ +G +L++ GL+ + +DL+ +
Sbjct: 596 SDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLRE-GRQL 653
Query: 96 AMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQIT-PDKIQFERNFDRQKSRILSLSWH 154
F I+S+ P+G L VG E +V++ T PDK Q + +S +LSL +
Sbjct: 654 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLH----ESCVLSLKFA 709
Query: 155 PSGTHIAAGSIDYI----------SVFDVKSGSAVHK--MIVDRQYM--GVSKRKCIVWG 200
G + D + S+F K S+V + D +Y+ G +K V+
Sbjct: 710 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYE 769
Query: 201 VAF 203
V +
Sbjct: 770 VIY 772
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 43.5 bits (101), Expect = 6e-04
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 21/236 (8%)
Query: 27 QSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEY 86
+ N + TD T++++N + GH S T +R+ S + + +
Sbjct: 312 RDNIIISGSTDRTLKVWNAETGECIHTLY-GHTS--TVRCMHLHEKRVVSGSRDATLRVW 368
Query: 87 DLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKS 146
D++ + + G G +++ G D VK++ P+ +
Sbjct: 369 DIETGQCLHVL--MGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTN 424
Query: 147 RILSLSWHPSGTHIAAGSIDY-ISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLS 205
R+ SL + G H+ +GS+D I V+DV++G+ +H + + + + G+ L
Sbjct: 425 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL---------TGHQSLTSGME-LK 472
Query: 206 DGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTA-EGTV 260
D ++S ++ V+ WD TG +++ N ++ +FV+ ++ +GTV
Sbjct: 473 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 528
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 43.5 bits (101), Expect = 6e-04
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 21/236 (8%)
Query: 27 QSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEY 86
+ N + TD T++++N + GH S T +R+ S + + +
Sbjct: 430 RDNIIISGSTDRTLKVWNAETGECIHTLY-GHTS--TVRCMHLHEKRVVSGSRDATLRVW 486
Query: 87 DLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKS 146
D++ + + G G +++ G D VK++ P+ +
Sbjct: 487 DIETGQCLHVL--MGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTN 542
Query: 147 RILSLSWHPSGTHIAAGSIDY-ISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLS 205
R+ SL + G H+ +GS+D I V+DV++G+ +H + + + + G+ L
Sbjct: 543 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL---------TGHQSLTSGME-LK 590
Query: 206 DGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTA-EGTV 260
D ++S ++ V+ WD TG +++ N ++ +FV+ ++ +GTV
Sbjct: 591 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 646
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 43.5 bits (101), Expect = 6e-04
Identities = 48/236 (20%), Positives = 101/236 (42%), Gaps = 21/236 (8%)
Query: 27 QSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNGEIMEY 86
+ N + TD T++++N + GH S T +R+ S + + +
Sbjct: 350 RDNIIISGSTDRTLKVWNAETGECIHTLY-GHTS--TVRCMHLHEKRVVSGSRDATLRVW 406
Query: 87 DLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQKS 146
D++ + + G G +++ G D VK++ P+ +
Sbjct: 407 DIETGQCLHVL--MGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTN 462
Query: 147 RILSLSWHPSGTHIAAGSIDY-ISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLS 205
R+ SL + G H+ +GS+D I V+DV++G+ +H + + + + G+ L
Sbjct: 463 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL---------TGHQSLTSGME-LK 510
Query: 206 DGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTA-EGTV 260
D ++S ++ V+ WD TG +++ N ++ +FV+ ++ +GTV
Sbjct: 511 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 566
>gi|51242945 striatin, calmodulin binding protein [Homo sapiens]
Length = 780
Score = 42.7 bits (99), Expect = 0.001
Identities = 61/300 (20%), Positives = 123/300 (41%), Gaps = 33/300 (11%)
Query: 18 GIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKF----------FPGHESRATEALC 67
GIR +A++ L + D T++++NL +K F H+ +
Sbjct: 465 GIRALAFHPIEPVLITASEDHTLKMWNLQKTAPAKKSTSLDVEPIYTFRAHKGPVLCVVM 524
Query: 68 WAEGQRLFSAGLNGEIMEYDLQALNI----KYAMDAFGGP-------IWSMAASPSGSQL 116
+ G++ +S G +G I ++ NI Y GP +W +A S + +L
Sbjct: 525 SSNGEQCYSGGTDGLIQGWNTTNPNIDPYDSYDPSVLRGPLLGHTDAVWGLAYSAAHQRL 584
Query: 117 LVGCEDGSVKLF---QITPDKIQFERNFDRQKSRILSLSWHPSGTHIAAGSIDYISVFDV 173
L DG+++L+ ++ P F + + L +A+ S Y S+F++
Sbjct: 585 LSCSADGTLRLWNTTEVAPALSVFNDTKELGIPASVDLVSSDPSHMVASFSKGYTSIFNM 644
Query: 174 KSGSAVHKMIVDRQYMGVSKRKCIVWGVAFLSDGTI---ISVDSAGKVQFWDSATGTLVK 230
++ + + ++ + C + V +S T+ I+ ++F+D+ TG L+
Sbjct: 645 ETQQRI--LTLESNVDTTANSSCQINRV--ISHPTLPISITAHEDRHIKFYDNNTGKLIH 700
Query: 231 SHLIANADVQSIAVADQEDSFVVGTAEGTVFHFQLVPVTSNSSEKQWVRTKPFQHHTHDV 290
S + V S+AV + G+ + ++ + L T ++ K F+ HDV
Sbjct: 701 SMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKT--CIQEFTAHRKKFEESIHDV 758
Score = 34.7 bits (78), Expect = 0.30
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 86 YDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERNFDRQK 145
YD + ++M A + S+A P+G L+ G D S++L+ + E R+K
Sbjct: 691 YDNNTGKLIHSMVAHLEAVTSLAVDPNGLYLMSGSHDCSIRLWNLESKTCIQEFTAHRKK 750
Query: 146 --SRILSLSWHPSGTHIAAGSIDYIS 169
I +++HPS +IA+ D ++
Sbjct: 751 FEESIHDVAFHPSKCYIASAGADALA 776
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 42.4 bits (98), Expect = 0.001
Identities = 56/287 (19%), Positives = 124/287 (43%), Gaps = 24/287 (8%)
Query: 21 CVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLN 80
C+ + + L +D T+++++ Y +K GH+ ALC +G +L+S +
Sbjct: 401 CLCVYSMGDLLFSGSSDKTIKVWDTCTTYKCQKTLEGHDGIVL-ALC-IQGCKLYSGSAD 458
Query: 81 GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSVKLFQITPDKIQFERN 140
I+ +D+Q L + A P+ ++ +S +L ++K++ I +++ ++
Sbjct: 459 CTIIVWDIQNLQKVNTIRAHDNPVCTLVSS---HNVLFSGSLKAIKVWDIVGTELKLKKE 515
Query: 141 FDRQKSRILSLSWHPSGTHIAAGSIDYISVFDVKSGSAVHKMIVDRQYMGVSKRKCIVWG 200
+ +L + +++ +GS I ++D+++ +H + Q G S V+
Sbjct: 516 LTGLNHWVRALV--AAQSYLYSGSYQTIKIWDIRTLDCIHVL----QTSGGS-----VYS 564
Query: 201 VAFLSDGTIISVDSAGKVQFWDSATGTLVKSHLIANADVQSIAVADQEDSFVVGTAEGTV 260
+A +++ I+ + WD + V++ V ++AV D V +A
Sbjct: 565 IA-VTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSAS--- 620
Query: 261 FHFQLVPVTSNSSEKQWVRTKPFQHHTHDVRTVAHSPTALISGGTDT 307
+ + + V S + + T+ H V +A S L SG D+
Sbjct: 621 -YDRSLRVWSMDN---MICTQTLLRHQGSVTALAVSRGRLFSGAVDS 663
>gi|5901892 WD repeat and HMG-box DNA binding protein 1 isoform 1
[Homo sapiens]
Length = 1129
Score = 42.4 bits (98), Expect = 0.001
Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 10/176 (5%)
Query: 22 VAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRATEALCWAEGQRLFSAGLNG 81
V +N ++A +D V+I ++ + Q+K F GH++ + L SA +G
Sbjct: 100 VVFNGDGTKIAAGSSDFLVKIVDVMDSS-QQKTFRGHDAPVLSLSFDPKDIFLASASCDG 158
Query: 82 EIMEYDL--QALNIKYAM-----DAFGGP-IWSMAASPSGSQLLVGCEDGSVKLFQITPD 133
+ + + Q I + + D I +A P +LL + SVKL++
Sbjct: 159 SVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESW 218
Query: 134 KIQFERNFDRQKSRILSLSWHPSGTHIAAGSID-YISVFDVKSGSAVHKMIVDRQY 188
QF+ + + + ++W P G ++AAGSI+ I V++V++ + ++ ++ Y
Sbjct: 219 SHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGY 274
>gi|75677340 WD repeat domain, phosphoinositide interacting 2
isoform e [Homo sapiens]
Length = 384
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 423 DNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGA-LHIVQLSGGSFKHLHAFQPQS 481
D I+L+ + +PA + F TKL AS +G + + + G + L F+
Sbjct: 129 DTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEG--QKLFEFRRGV 186
Query: 482 GTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLK 517
++C LA S DG +L+AS + VH++ ++ +K
Sbjct: 187 KRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVK 222
Score = 37.0 bits (84), Expect = 0.061
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 425 ISLKRVSKMPA--FLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKH-------LH 475
+SLK K+ F + +S +T L V N+ L IV L + H LH
Sbjct: 32 VSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRL-IVCLEESLYIHNIRDMKVLH 90
Query: 476 AFQPQSGTVEAMCLLAVSPDGNWLA--ASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMA 533
+ +C L+++ D +LA S T V V++ L+ +PA++ P+ A+A
Sbjct: 91 TIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALA 150
Query: 534 IAPNTNNLVIAHSDQQVFE-YSIPDKQ 559
+ L A V +SIP+ Q
Sbjct: 151 FDASGTKLATASEKGTVIRVFSIPEGQ 177
Score = 31.2 bits (69), Expect = 3.3
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 81 GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSV-KLFQITPDKIQFE- 138
GE+ +D L + A P+ ++A SG++L E G+V ++F I + FE
Sbjct: 123 GEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEF 182
Query: 139 RNFDRQKSRILSLSWHPSGTHIAAGS 164
R ++ I SL++ G ++A S
Sbjct: 183 RRGVKRCVSICSLAFSMDGMFLSASS 208
>gi|75677331 WD repeat domain, phosphoinositide interacting 2
isoform d [Homo sapiens]
Length = 425
Score = 42.0 bits (97), Expect = 0.002
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 423 DNISLKRVSKMPAFLRSALQILFSEDSTKLFVASNQGA-LHIVQLSGGSFKHLHAFQPQS 481
D I+L+ + +PA + F TKL AS +G + + + G + L F+
Sbjct: 170 DTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEG--QKLFEFRRGV 227
Query: 482 GTVEAMCLLAVSPDGNWLAASGTSAGVHVYNVKQLK 517
++C LA S DG +L+AS + VH++ ++ +K
Sbjct: 228 KRCVSICSLAFSMDGMFLSASSNTETVHIFKLETVK 263
Score = 37.0 bits (84), Expect = 0.061
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 13/147 (8%)
Query: 425 ISLKRVSKMPA--FLRSALQILFSEDSTKLFVASNQGALHIVQLSGGSFKH-------LH 475
+SLK K+ F + +S +T L V N+ L IV L + H LH
Sbjct: 73 VSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRL-IVCLEESLYIHNIRDMKVLH 131
Query: 476 AFQPQSGTVEAMCLLAVSPDGNWLA--ASGTSAGVHVYNVKQLKLHCTVPAYNFPVTAMA 533
+ +C L+++ D +LA S T V V++ L+ +PA++ P+ A+A
Sbjct: 132 TIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALA 191
Query: 534 IAPNTNNLVIAHSDQQVFE-YSIPDKQ 559
+ L A V +SIP+ Q
Sbjct: 192 FDASGTKLATASEKGTVIRVFSIPEGQ 218
Score = 31.2 bits (69), Expect = 3.3
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 81 GEIMEYDLQALNIKYAMDAFGGPIWSMAASPSGSQLLVGCEDGSV-KLFQITPDKIQFE- 138
GE+ +D L + A P+ ++A SG++L E G+V ++F I + FE
Sbjct: 164 GEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEF 223
Query: 139 RNFDRQKSRILSLSWHPSGTHIAAGS 164
R ++ I SL++ G ++A S
Sbjct: 224 RRGVKRCVSICSLAFSMDGMFLSASS 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,629,656
Number of Sequences: 37866
Number of extensions: 1165722
Number of successful extensions: 2839
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 2384
Number of HSP's gapped (non-prelim): 546
length of query: 686
length of database: 18,247,518
effective HSP length: 109
effective length of query: 577
effective length of database: 14,120,124
effective search space: 8147311548
effective search space used: 8147311548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.