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Search of human proteins with 18375505
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18375505 APEX nuclease 1 [Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18375505 APEX nuclease 1 [Homo sapiens] 659 0.0
gi|18375503 APEX nuclease 1 [Homo sapiens] 659 0.0
gi|18375501 APEX nuclease 1 [Homo sapiens] 659 0.0
gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens] 83 3e-16
gi|71274178 developing brain homeobox 1 [Homo sapiens] 34 0.20
gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens] 32 0.75
gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens] 32 0.75
gi|7657540 schwannomin interacting protein 1 [Homo sapiens] 31 1.3
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom... 31 1.3
gi|112363092 RING1 and YY1 binding protein [Homo sapiens] 31 1.7
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo... 31 1.7
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo... 31 1.7
gi|192807300 calcium channel, voltage-dependent, L type, alpha 1... 29 4.8
gi|192807298 calcium channel, voltage-dependent, L type, alpha 1... 29 4.8
gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D ... 29 4.8
gi|30795231 brain abundant, membrane attached signal protein 1 [... 29 4.8
gi|18375535 three prime repair exonuclease 1 isoform b [Homo sap... 29 4.8
gi|7705353 three prime repair exonuclease 1 isoform a [Homo sapi... 29 4.8
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 29 4.8
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 29 6.3
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 29 6.3
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo... 29 6.3
gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo sapi... 28 8.2
gi|4557509 cylicin 2 [Homo sapiens] 28 8.2
gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens] 28 8.2
gi|193211603 pleckstrin homology domain containing, family G (wi... 28 8.2
gi|193211598 pleckstrin homology domain containing, family G (wi... 28 8.2
gi|193211596 pleckstrin homology domain containing, family G (wi... 28 8.2
gi|193211594 pleckstrin homology domain containing, family G (wi... 28 8.2
gi|55742734 pleckstrin homology domain containing, family G (wit... 28 8.2
>gi|18375505 APEX nuclease 1 [Homo sapiens]
Length = 318
Score = 659 bits (1701), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 301 RSKALGSDHCPITLYLAL 318
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>gi|18375503 APEX nuclease 1 [Homo sapiens]
Length = 318
Score = 659 bits (1701), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 301 RSKALGSDHCPITLYLAL 318
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>gi|18375501 APEX nuclease 1 [Homo sapiens]
Length = 318
Score = 659 bits (1701), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
Sbjct: 1 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA 60
Query: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
Sbjct: 61 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
Sbjct: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV 180
Query: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
Sbjct: 181 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF 240
Query: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
Sbjct: 241 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI 300
Query: 301 RSKALGSDHCPITLYLAL 318
RSKALGSDHCPITLYLAL
Sbjct: 301 RSKALGSDHCPITLYLAL 318
>gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
Length = 518
Score = 83.2 bits (204), Expect = 3e-16
Identities = 87/326 (26%), Positives = 130/326 (39%), Gaps = 83/326 (25%)
Query: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAP-----------------DILCLQETKCSENKL 104
L++ SWN++G+R + L V + P DI+CLQETK + + L
Sbjct: 2 LRVVSWNINGIR-----RPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDAL 56
Query: 105 PAELQELPGLSHQYWSAPSDKEGYSGV------------------GLLSRQCPLKVSYGI 146
L + G + Y+S ++ GYSGV GL + Q YG
Sbjct: 57 TEPLAIVEGYN-SYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGN 115
Query: 147 GDE-------EHDQEGRVIVAEFD---------SFVLVTAYVPNAGRGLV-RLEYRQRWD 189
DE D EGR ++ + + L+ Y P+A G RL ++ R+
Sbjct: 116 MDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFY 175
Query: 190 EAFRKFLKGL-ASRKPLVLCGDLNVAHEEID---------LRNPKGNK------KNAGFT 233
+ + L A+ +++ GDLN AH ID G K N G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 234 PQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSL-L 292
G P DS+R P A+T W+ + AR N G RLDY L +L +
Sbjct: 236 SASHVG--------PFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVI 287
Query: 293 PALCDSKIRSKALGSDHCPITLYLAL 318
S + + +GSDHCP+ L++
Sbjct: 288 DTFQASFLLPEVMGSDHCPVGAVLSV 313
>gi|71274178 developing brain homeobox 1 [Homo sapiens]
Length = 382
Score = 33.9 bits (76), Expect = 0.20
Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 2 PKRGK-KGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAG--------EGPALYEDPPDQK 52
P+RG + AV D E +K K +K + K+ A + E PD
Sbjct: 178 PRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQDTARRTEPAPDST 237
Query: 53 TSPSGKPATLKICSWN-------VDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLP 105
P P + S + ++ W + + + W + ++L C E LP
Sbjct: 238 PRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELL--SSGGCREQTLP 295
Query: 106 AELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRV 157
+L P LS P ++E G G S + S D +H ++ R+
Sbjct: 296 TKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHAS---SDPQHLRDPRL 344
>gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]
Length = 829
Score = 32.0 bits (71), Expect = 0.75
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 81 LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
+D+ E+A D+L E K S K+ EL++ P L H Y ++ + G +Q L
Sbjct: 535 MDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISL 594
Query: 141 KVSY 144
Y
Sbjct: 595 YAEY 598
>gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]
Length = 854
Score = 32.0 bits (71), Expect = 0.75
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 81 LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPL 140
+D+ E+A D+L E K S K+ EL++ P L H Y ++ + G +Q L
Sbjct: 560 MDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISL 619
Query: 141 KVSY 144
Y
Sbjct: 620 YAEY 623
>gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
Length = 487
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 16 ELRTEPEAKKSKTAAKKNDKEAAGEGPAL---YEDPPDQKT--SPSGKPA---------T 61
E+R + +A+ + T+A+KN++E+ + AL ++D P T S SGKP+
Sbjct: 240 EVRNQGQARTNSTSAQKNERESIRQKLALGSFFDDGPGIYTSCSKSGKPSLSSRLQSGMN 299
Query: 62 LKICSWNVDG 71
L+IC N G
Sbjct: 300 LQICFVNDSG 309
>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
sapiens]
Length = 183
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 5 GKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEG-PALYEDPPDQKTSPSGKPA 60
GK+ A E GDE + E + + K + + + GEG PA P Q + +PA
Sbjct: 46 GKRKAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPA 102
>gi|112363092 RING1 and YY1 binding protein [Homo sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 2 PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPAT 61
PK+ KK V E D+ + E + + S + KKN + + +DPP + S AT
Sbjct: 76 PKKEKKEKV-EKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPPSEANSIQSANAT 134
Query: 62 LKICSWN 68
K N
Sbjct: 135 TKTSETN 141
>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 5 GKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEG-PALYEDPPDQKTSPSGKPA 60
GK+ E GDE + E E + K + + + GEG PA P Q + +PA
Sbjct: 46 GKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA 102
>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 5 GKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEG-PALYEDPPDQKTSPSGKPA 60
GK+ E GDE + E E + K + + + GEG PA P Q + +PA
Sbjct: 46 GKREDEGEPGDEGQLEDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPA 102
>gi|192807300 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform b [Homo sapiens]
Length = 2161
Score = 29.3 bits (64), Expect = 4.8
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 228 KNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLL 287
KN +RQ L+A PL R P PY Y FW Y++N+ +Y +
Sbjct: 1164 KNCELDKNQRQCVEYALKARPL----RRYIPKNPYQYKFW-YVVNSSP------FEYMMF 1212
Query: 288 SHSLLPALC 296
+L LC
Sbjct: 1213 VLIMLNTLC 1221
>gi|192807298 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform c [Homo sapiens]
Length = 2137
Score = 29.3 bits (64), Expect = 4.8
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 228 KNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLL 287
KN +RQ L+A PL R P PY Y FW Y++N+ +Y +
Sbjct: 1164 KNCELDKNQRQCVEYALKARPL----RRYIPKNPYQYKFW-YVVNSSP------FEYMMF 1212
Query: 288 SHSLLPALC 296
+L LC
Sbjct: 1213 VLIMLNTLC 1221
>gi|4502527 calcium channel, voltage-dependent, L type, alpha 1D
subunit isoform a [Homo sapiens]
Length = 2181
Score = 29.3 bits (64), Expect = 4.8
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 228 KNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLL 287
KN +RQ L+A PL R P PY Y FW Y++N+ +Y +
Sbjct: 1184 KNCELDKNQRQCVEYALKARPL----RRYIPKNPYQYKFW-YVVNSSP------FEYMMF 1232
Query: 288 SHSLLPALC 296
+L LC
Sbjct: 1233 VLIMLNTLC 1241
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 29.3 bits (64), Expect = 4.8
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKN-----DKEAAGEGPALYEDPPDQKTSPSG 57
K G+K A A + + EPE + AK ++E A GPA + P + +
Sbjct: 69 KEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAA 128
Query: 58 KPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
+ + K++G + K EAP QETK + PA PG S
Sbjct: 129 PAESAAPAAGEEPS-----KEEG-EPKKTEAPAAPAAQETK--SDGAPAS-DSKPGSSE- 178
Query: 118 YWSAPSDKE 126
+APS KE
Sbjct: 179 --AAPSSKE 185
>gi|18375535 three prime repair exonuclease 1 isoform b [Homo
sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 4.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 46 EDPPDQKTSPSGKPATLKICSWNVDGLRAWI 76
+ PPD T+ A L IC W L W+
Sbjct: 189 QSPPDSHTAEGDVLALLSICQWRPQALLRWV 219
>gi|7705353 three prime repair exonuclease 1 isoform a [Homo
sapiens]
Length = 369
Score = 29.3 bits (64), Expect = 4.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 46 EDPPDQKTSPSGKPATLKICSWNVDGLRAWI 76
+ PPD T+ A L IC W L W+
Sbjct: 244 QSPPDSHTAEGDVLALLSICQWRPQALLRWV 274
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 29.3 bits (64), Expect = 4.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 19 TEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKP 59
+EP K SK ++ K A EGP D D SP+ P
Sbjct: 620 SEPGDKASKKPSRGRRKLTATEGPGSPRDAEDHSPSPNSSP 660
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 28.9 bits (63), Expect = 6.3
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Query: 2 PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPAT 61
P+R KG ED E ++ E++ + ++ +EA + +S S +
Sbjct: 309 PRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQEA--------NLSSQENSSESQEEVV 360
Query: 62 LKICSWNVDGLRAWIK-KKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
+ N D ++++ ++ D +E++ L +++ E + +E E S +
Sbjct: 361 SESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQADSESSESLNFSEESPE 420
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQE 154
+P D+ S GL S + +E H +E
Sbjct: 421 SPEDENSSSQEGLQSHSSSAESQ---SEESHSEE 451
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 28.9 bits (63), Expect = 6.3
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Query: 2 PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPAT 61
P+R KG ED E ++ E++ + ++ +EA + +S S +
Sbjct: 293 PRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQEA--------NLSSQENSSESQEEVV 344
Query: 62 LKICSWNVDGLRAWIK-KKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS 120
+ N D ++++ ++ D +E++ L +++ E + +E E S +
Sbjct: 345 SESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQADSESSESLNFSEESPE 404
Query: 121 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQE 154
+P D+ S GL S + +E H +E
Sbjct: 405 SPEDENSSSQEGLQSHSSSAESQ---SEESHSEE 435
>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
sapiens]
Length = 206
Score = 28.9 bits (63), Expect = 6.3
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 5 GKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEG-PALYEDPPDQKTSPSGKPA 60
GK+ E GDE + E E + K + + + EG PA P Q + +PA
Sbjct: 52 GKREDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPA 108
>gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo
sapiens]
Length = 1023
Score = 28.5 bits (62), Expect = 8.2
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKE----------AAGEGPALYEDPPDQK 52
K+GKKG D DEL+ E K + + ++ +A L D P+
Sbjct: 21 KKGKKGKKDRDMDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNAL 80
Query: 53 TSPSGKPATLKIC 65
T P P +K C
Sbjct: 81 TPPPTTPEWIKFC 93
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 8.2
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 4 RGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGK 58
+GK A +G++ TE ++KK K +KK K++A E A+ D+K GK
Sbjct: 198 KGKDSATESEGEKGGTEKDSKKGKKDSKKG-KDSAIELQAV---KADEKKDEDGK 248
>gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo
sapiens]
Length = 1023
Score = 28.5 bits (62), Expect = 8.2
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKE----------AAGEGPALYEDPPDQK 52
K+GKKG D DEL+ E K + + ++ +A L D P+
Sbjct: 21 KKGKKGKKDRDMDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNAL 80
Query: 53 TSPSGKPATLKIC 65
T P P +K C
Sbjct: 81 TPPPTTPEWIKFC 93
>gi|193211603 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4 isoform 2 [Homo sapiens]
Length = 1110
Score = 28.5 bits (62), Expect = 8.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 AWIKKKG---LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
AW++ +G L W+K+E P++ + + + +K + GL HQ
Sbjct: 310 AWLQCQGGRELTWLKQEVPEVTLSPDYRTAMDKADELYDRVDGLLHQ 356
>gi|193211598 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4 isoform 1 [Homo sapiens]
Length = 1191
Score = 28.5 bits (62), Expect = 8.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 AWIKKKG---LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
AW++ +G L W+K+E P++ + + + +K + GL HQ
Sbjct: 391 AWLQCQGGRELTWLKQEVPEVTLSPDYRTAMDKADELYDRVDGLLHQ 437
>gi|193211596 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4 isoform 1 [Homo sapiens]
Length = 1191
Score = 28.5 bits (62), Expect = 8.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 AWIKKKG---LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
AW++ +G L W+K+E P++ + + + +K + GL HQ
Sbjct: 391 AWLQCQGGRELTWLKQEVPEVTLSPDYRTAMDKADELYDRVDGLLHQ 437
>gi|193211594 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4 isoform 1 [Homo sapiens]
Length = 1191
Score = 28.5 bits (62), Expect = 8.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 AWIKKKG---LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
AW++ +G L W+K+E P++ + + + +K + GL HQ
Sbjct: 391 AWLQCQGGRELTWLKQEVPEVTLSPDYRTAMDKADELYDRVDGLLHQ 437
>gi|55742734 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4 isoform 1 [Homo sapiens]
Length = 1191
Score = 28.5 bits (62), Expect = 8.2
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 74 AWIKKKG---LDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQ 117
AW++ +G L W+K+E P++ + + + +K + GL HQ
Sbjct: 391 AWLQCQGGRELTWLKQEVPEVTLSPDYRTAMDKADELYDRVDGLLHQ 437
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,917,851
Number of Sequences: 37866
Number of extensions: 697126
Number of successful extensions: 2176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2150
Number of HSP's gapped (non-prelim): 45
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.