APEX1 9836

Name: APEX1	Sequence: fasta or formatted (318aa)		NCBI GI: 18375505
Description: APEX nuclease 1		Referenced in: DNases, Recombination, and DNA Repair
Other entries for this name: alt mRNA [318aa] APEX nuclease 1 alt mRNA [318aa] APEX nuclease 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.5 27 2 C cysteine 2.2 7 1 D aspartate 6.0 19 1 E glutamate 7.5 24 2 F phenylalanine 2.8 9 1 G glycine 7.9 25 1 H histidine 1.9 6 1 I isoleucine 2.5 8 1 K lysine 9.1 29 3 L leucine 11.6 37 2 M methionine 0.9 3 2 N asparagine 3.5 11 1 P proline 6.6 21 2 Q glutamine 3.1 10 1 R arginine 5.3 17 1 S serine 6.3 20 1 T threonine 3.5 11 1 V valine 4.7 15 1 W tryptophan 2.2 7 1 Y tyrosine 3.8 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 APEX nuclease 1 APEX1 1.000 APEX nuclease 1 APEX1 1.000 APEX nuclease 1 APEX2 0.091 apurinic/apyrimidinic endonuclease 2 DBX1 0.014 developing brain homeobox 1 VPS41 0.011 vacuolar protein sorting 41 isoform 2 VPS41 0.011 vacuolar protein sorting 41 isoform 1 SCHIP1 0.009 schwannomin interacting protein 1 TCEAL6 0.009 transcription elongation factor A (SII)-like 6 [Hom... RYBP 0.009 RING1 and YY1 binding protein TCEAL3 0.009 transcription elongation factor A (SII)-like 3 [Homo... TCEAL3 0.009 transcription elongation factor A (SII)-like 3 [Homo... CACNA1D 0.006 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.006 calcium channel, voltage-dependent, L type, alpha 1... CACNA1D 0.006 calcium channel, voltage-dependent, L type, alpha 1D ... BASP1 0.006 brain abundant, membrane attached signal protein 1 [... TREX1 0.006 three prime repair exonuclease 1 isoform b TREX1 0.006 three prime repair exonuclease 1 isoform a C20orf151 0.006 hypothetical protein LOC140893 DMP1 0.006 dentin matrix acidic phosphoprotein 1 isoform 1 precu... DMP1 0.006 dentin matrix acidic phosphoprotein 1 isoform 2 pre... TCEAL5 0.006 transcription elongation factor A (SII)-like 5 [Homo... ATP1A1 0.005 Na+/K+ -ATPase alpha 1 subunit isoform c CYLC2 0.005 cylicin 2 ATP1A1 0.005 Na+/K+ -ATPase alpha 1 subunit isoform a PLEKHG4 0.005 pleckstrin homology domain containing, family G (wi... PLEKHG4 0.005 pleckstrin homology domain containing, family G (wi... PLEKHG4 0.005 pleckstrin homology domain containing, family G (wi... PLEKHG4 0.005 pleckstrin homology domain containing, family G (wi... PLEKHG4 0.005 pleckstrin homology domain containing, family G (wit... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.