Guide to the Human Genome
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Name: C20orf144 Sequence: fasta or formatted (153aa) NCBI GI: 18250302
Description:

hypothetical protein LOC128864

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         19           2
 C cysteine            1.3          2           1
 D aspartate           2.6          4           1
 E glutamate           6.5         10           2
 F phenylalanine       1.3          2           1
 G glycine             7.8         12           2
 H histidine           1.3          2           1
 I isoleucine          2.0          3           1
 K lysine              7.2         11           2
 L leucine            10.5         16           4
 M methionine          2.0          3           1
 N asparagine          2.0          3           1
 P proline            11.1         17           1
 Q glutamine           3.9          6           1
 R arginine           15.7         24           2
 S serine              5.9          9           2
 T threonine           2.0          3           1
 V valine              1.3          2           1
 W tryptophan          2.0          3           2
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC128864 
C9orf50               0.041   hypothetical protein LOC375759 
FOXK2                 0.034   forkhead box K2 
LOC100286967          0.034   PREDICTED: hypothetical protein XP_002342247 
PWWP2B                0.031   PWWP domain containing 2 isoform 1 
PWWP2B                0.031   PWWP domain containing 2 isoform 2 
C2orf55               0.028   hypothetical protein LOC343990 
LOC100292993          0.028   PREDICTED: hypothetical protein 
LOC388279             0.028   PREDICTED: hypothetical protein 
MAP3K6                0.024   mitogen-activated protein kinase kinase kinase 6 [Ho...
ZAR1                  0.024   zygote arrest 1 
LOC100291843          0.024   PREDICTED: hypothetical protein XP_002344913 
LOC388199             0.024   PREDICTED: hypothetical protein LOC388199 
LOC100291533          0.024   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.024   PREDICTED: hypothetical protein XP_002342946 
LOC388199             0.024   hypothetical protein LOC388199 
LOC643355             0.021   PREDICTED: hypothetical protein 
LOC643355             0.021   PREDICTED: hypothetical protein 
LOC643355             0.021   PREDICTED: hypothetical protein 
ANKRD56               0.021   ankyrin repeat domain 56 
LOC100293902          0.017   PREDICTED: similar to hCG1986016 
ZNF716                0.017   PREDICTED: zinc finger protein 716 
LOC390595             0.017   PREDICTED: similar to ubiquitin-associated protein ...
LOC441617             0.017   PREDICTED: similar to hCG1820409 
LOC390595             0.017   PREDICTED: similar to ubiquitin-associated protein ...
LOC441617             0.017   PREDICTED: similar to hCG1820409 
LOC390595             0.017   PREDICTED: hypothetical protein 
LOC441617             0.017   PREDICTED: similar to hCG1820409 
FOXK1                 0.017   forkhead box K1 
KCNS1                 0.017   potassium voltage-gated channel delayed-rectifier pr...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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