Guide to the Human Genome
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Name: UBE2F Sequence: fasta or formatted (185aa) NCBI GI: 18087857
Description:

NEDD8-conjugating enzyme

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         11           2
 C cysteine            2.7          5           1
 D aspartate           8.6         16           2
 E glutamate           6.5         12           1
 F phenylalanine       3.8          7           1
 G glycine             4.9          9           2
 H histidine           3.2          6           2
 I isoleucine          3.2          6           1
 K lysine              8.1         15           1
 L leucine            11.4         21           2
 M methionine          1.1          2           1
 N asparagine          4.3          8           1
 P proline             5.4         10           2
 Q glutamine           1.6          3           1
 R arginine            5.9         11           2
 S serine              4.3          8           1
 T threonine           8.1         15           1
 V valine              6.5         12           2
 W tryptophan          1.6          3           1
 Y tyrosine            2.7          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NEDD8-conjugating enzyme 
UBE2M                 0.254   ubiquitin-conjugating enzyme E2M 
UBE2D1                0.169   ubiquitin-conjugating enzyme E2D 1 
UBE2D4                0.166   ubiquitin-conjugating enzyme E2D 4 (putative) 
UBE2G1                0.166   ubiquitin-conjugating enzyme E2G 1 
UBE2D3                0.157   ubiquitin-conjugating enzyme E2D 3 isoform 3 
UBE2D3                0.157   ubiquitin-conjugating enzyme E2D 3 isoform 2 
UBE2D2                0.157   ubiquitin-conjugating enzyme E2D 2 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.155   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2K                 0.152   ubiquitin-conjugating enzyme E2K isoform 1 
UBE2E2                0.146   ubiquitin-conjugating enzyme E2E 2 
UBE2K                 0.138   ubiquitin-conjugating enzyme E2K isoform 2 
UBE2E3                0.138   ubiquitin-conjugating enzyme E2E 3 
UBE2E3                0.138   ubiquitin-conjugating enzyme E2E 3 
UBE2D2                0.138   ubiquitin-conjugating enzyme E2D 2 isoform 2 
UBE2L3                0.133   ubiquitin-conjugating enzyme E2L 3 isoform 1 
UBE2E1                0.133   ubiquitin-conjugating enzyme E2E 1 isoform 1 
UBE2N                 0.130   ubiquitin-conjugating enzyme E2N 
CDC34                 0.127   ubiquitin-conjugating enzyme Cdc34 
UBE2E1                0.116   ubiquitin-conjugating enzyme E2E 1 isoform 2 
UBE2L6                0.113   ubiquitin-conjugating enzyme E2L 6 isoform 1 
UBE2R2                0.113   ubiquitin-conjugating enzyme UBC3B 
UBE2H                 0.105   ubiquitin-conjugating enzyme E2H isoform 1 
UBE2I                 0.102   ubiquitin-conjugating enzyme E2I 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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