Guide to the Human Genome
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Name: EPHB3 Sequence: fasta or formatted (998aa) NCBI GI: 17975768
Description:

ephrin receptor EphB3 precursor

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         78           2
 C cysteine            2.8         28           1
 D aspartate           5.0         50           2
 E glutamate           5.9         59           2
 F phenylalanine       3.5         35           1
 G glycine             6.4         64           2
 H histidine           1.3         13           1
 I isoleucine          4.4         44           2
 K lysine              3.7         37           2
 L leucine             8.6         86           4
 M methionine          2.5         25           1
 N asparagine          3.7         37           2
 P proline             7.1         71           5
 Q glutamine           3.8         38           2
 R arginine            6.3         63           2
 S serine              8.3         83           3
 T threonine           5.8         58           2
 V valine              8.0         80           3
 W tryptophan          1.5         15           1
 Y tyrosine            3.4         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphB3 precursor 
EPHB2                 0.692   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.691   ephrin receptor EphB2 isoform 2 precursor 
EPHB1                 0.690   ephrin receptor EphB1 precursor 
EPHB4                 0.558   EPH receptor B4 precursor 
EPHA4                 0.551   ephrin receptor EphA4 
EPHA3                 0.537   ephrin receptor EphA3 isoform a precursor 
EPHA5                 0.535   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.530   ephrin receptor EphA5 isoform a precursor 
EPHA7                 0.524   ephrin receptor EphA7 
EPHA6                 0.504   EPH receptor A6 isoform a 
EPHA8                 0.482   ephrin receptor EphA8 isoform 1 precursor 
EPHB6                 0.429   ephrin receptor EphB6 precursor 
EPHA2                 0.424   ephrin receptor EphA2 
EPHA10                0.388   EPH receptor A10 isofom 3 
EPHA1                 0.359   ephrin receptor EphA1 
EPHA3                 0.254   ephrin receptor EphA3 isoform b precursor 
EPHA8                 0.194   ephrin receptor EphA8 isoform 2 precursor 
EPHA10                0.115   EPH receptor A10 isoform 2 
HCK                   0.097   hemopoietic cell kinase isoform p61HCK 
PTK2                  0.096   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.096   PTK2 protein tyrosine kinase 2 isoform a 
YES1                  0.095   viral oncogene yes-1 homolog 1 
IGF1R                 0.095   insulin-like growth factor 1 receptor precursor [Homo...
FYN                   0.094   protein-tyrosine kinase fyn isoform a 
SRC                   0.094   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.094   proto-oncogene tyrosine-protein kinase SRC 
LYN                   0.093   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.093   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
LCK                   0.093   lymphocyte-specific protein tyrosine kinase precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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