Guide to the Human Genome
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Name: VNN3 Sequence: fasta or formatted (147aa) NCBI GI: 17865819
Description:

vanin 3 isoform 2 precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Other entries for this name:
alt prot [274aa] vanin 3 isoform 1 precursor
alt prot [117aa] vanin 3 isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           2
 C cysteine            3.4          5           1
 D aspartate           4.1          6           1
 E glutamate           7.5         11           2
 F phenylalanine       2.7          4           1
 G glycine             4.1          6           1
 H histidine           3.4          5           1
 I isoleucine          8.2         12           2
 K lysine              7.5         11           2
 L leucine             8.8         13           3
 M methionine          2.0          3           1
 N asparagine          4.1          6           1
 P proline             6.8         10           1
 Q glutamine           2.0          3           1
 R arginine            3.4          5           1
 S serine              4.8          7           1
 T threonine           4.1          6           1
 V valine              7.5         11           1
 W tryptophan          2.7          4           1
 Y tyrosine            4.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vanin 3 isoform 2 precursor 
VNN3                  0.751   vanin 3 isoform 1 precursor 
VNN3                  0.747   vanin 3 isoform 3 precursor 
VNN2                  0.540   vanin 2 isoform 1 precursor 
VNN1                  0.435   vanin 1 precursor 
VNN2                  0.288   vanin 2 isoform 2 
BTD                   0.235   biotinidase precursor 
DGKI                  0.014   diacylglycerol kinase, iota 
ENTPD1                0.014   ectonucleoside triphosphate diphosphohydrolase 1 is...
ENTPD1                0.014   ectonucleoside triphosphate diphosphohydrolase 1 iso...
MMP25                 0.011   matrix metalloproteinase 25 preproprotein 
MYH1                  0.011   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.011   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.011   myosin, heavy chain 2, skeletal muscle, adult [Homo...
ENTPD3                0.011   ectonucleoside triphosphate diphosphohydrolase 3 [H...
MYH8                  0.011   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH4                  0.011   myosin, heavy polypeptide 4, skeletal muscle 
FBXO25                0.007   F-box only protein 25 isoform 1 
FBXO25                0.007   F-box only protein 25 isoform 2 
ZDHHC16               0.007   Abl-philin 2 isoform 3 
LIFR                  0.007   leukemia inhibitory factor receptor precursor 
HDAC5                 0.007   histone deacetylase 5 isoform 3 
HDAC5                 0.007   histone deacetylase 5 isoform 1 
LIFR                  0.007   leukemia inhibitory factor receptor precursor [Homo...
MYH3                  0.007   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CLCN3                 0.007   chloride channel 3 isoform e 
WDR6                  0.007   WD repeat domain 6 protein 
BCORL1                0.007   BCL6 co-repressor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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