Guide to the Human Genome
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Name: VNN1 Sequence: fasta or formatted (513aa) NCBI GI: 223633991
Description:

vanin 1 precursor

Referenced in:

Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         40           2
 C cysteine            2.5         13           2
 D aspartate           4.9         25           1
 E glutamate           5.1         26           2
 F phenylalanine       6.0         31           2
 G glycine             5.7         29           1
 H histidine           2.5         13           1
 I isoleucine          4.9         25           2
 K lysine              3.9         20           2
 L leucine             9.0         46           3
 M methionine          2.1         11           1
 N asparagine          5.8         30           2
 P proline             5.3         27           2
 Q glutamine           3.3         17           1
 R arginine            3.1         16           1
 S serine              8.0         41           2
 T threonine           7.6         39           2
 V valine              7.0         36           2
 W tryptophan          1.4          7           1
 Y tyrosine            4.1         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vanin 1 precursor 
VNN2                  0.621   vanin 2 isoform 1 precursor 
VNN2                  0.573   vanin 2 isoform 2 
BTD                   0.351   biotinidase precursor 
VNN3                  0.304   vanin 3 isoform 1 precursor 
VNN3                  0.121   vanin 3 isoform 3 precursor 
VNN3                  0.121   vanin 3 isoform 2 precursor 
NIT2                  0.017   nitrilase family, member 2 
NIT1                  0.008   nitrilase 1 
PITPNM1               0.007   phosphatidylinositol transfer protein, membrane-ass...
PITPNM1               0.007   phosphatidylinositol transfer protein, membrane-ass...
GBA2                  0.005   bile acid beta-glucosidase 
FAM3B                 0.005   family with sequence similarity 3, member B isoform ...
FAM3B                 0.005   family with sequence similarity 3, member B isoform ...
ENTPD1                0.004   ectonucleoside triphosphate diphosphohydrolase 1 is...
ENTPD1                0.004   ectonucleoside triphosphate diphosphohydrolase 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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