Guide to the Human Genome
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Name: ZKSCAN2 Sequence: fasta or formatted (967aa) NCBI GI: 171906606
Description:

zinc finger with KRAB and SCAN domains 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         52           2
 C cysteine            3.4         33           2
 D aspartate           3.2         31           3
 E glutamate          10.7        103           4
 F phenylalanine       3.8         37           2
 G glycine             5.8         56           2
 H histidine           3.7         36           2
 I isoleucine          3.9         38           2
 K lysine              7.4         72           1
 L leucine             6.7         65           2
 M methionine          1.2         12           1
 N asparagine          2.5         24           2
 P proline             6.4         62           2
 Q glutamine           5.5         53           3
 R arginine            8.1         78           2
 S serine              8.5         82           3
 T threonine           4.3         42           3
 V valine              5.5         53           2
 W tryptophan          1.6         15           1
 Y tyrosine            2.4         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger with KRAB and SCAN domains 2 
ZSCAN29               0.388   zinc finger protein 690 
ZSCAN20               0.313   zinc finger protein 31 
ZNF434                0.178   zinc finger protein 434 
ZFP2                  0.121   zinc finger protein 2 homolog 
ZNF180                0.121   zinc finger protein 180 
ZNF239                0.121   zinc finger protein 239 
ZNF239                0.121   zinc finger protein 239 
ZNF239                0.121   zinc finger protein 239 
ZNF239                0.121   zinc finger protein 239 
ZSCAN2                0.120   zinc finger protein 29 isoform 1 
ZNF135                0.120   zinc finger protein 135 
ZNF167                0.118   zinc finger protein 167 isoform 1 
ZNF544                0.118   zinc finger protein 544 
ZNF300                0.117   zinc finger protein 300 
ZNF629                0.117   zinc finger protein 629 
ZNF721                0.117   zinc finger protein 721 
ZNF436                0.117   zinc finger protein 436 
ZNF436                0.117   zinc finger protein 436 
ZNF214                0.117   zinc finger protein 214 
ZNF3                  0.117   zinc finger protein 3 isoform 2 
ZNF852                0.116   PREDICTED: zinc finger protein 852 
LOC344065             0.116   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.116   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF852                0.116   PREDICTED: zinc finger protein 852 
LOC344065             0.116   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF630                0.116   zinc finger protein 630 
ZNF34                 0.116   zinc finger protein 34 
ZNF774                0.116   zinc finger protein 774 
ZNF570                0.116   zinc finger protein 570 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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