Guide to the Human Genome
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Name: DMRTA1 Sequence: fasta or formatted (504aa) NCBI GI: 170763515
Description:

DMRT-like family A1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         51          11
 C cysteine            2.8         14           1
 D aspartate           3.0         15           1
 E glutamate           5.6         28           2
 F phenylalanine       3.0         15           1
 G glycine            10.9         55           4
 H histidine           1.2          6           1
 I isoleucine          2.8         14           1
 K lysine              3.6         18           1
 L leucine             8.9         45           2
 M methionine          1.0          5           1
 N asparagine          3.2         16           1
 P proline             8.5         43           4
 Q glutamine           4.8         24           2
 R arginine            7.5         38           2
 S serine             12.9         65           3
 T threonine           3.2         16           2
 V valine              4.2         21           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DMRT-like family A1 
DMRTA2                0.252   DMRT-like family A2 
DMRT3                 0.113   doublesex and mab-3 related transcription factor 3 [...
DMRT1                 0.101   doublesex and mab-3 related transcription factor 1 [...
DMRT2                 0.096   doublesex and mab-3 related transcription factor 2 ...
DMRT2                 0.096   doublesex and mab-3 related transcription factor 2 is...
DMRT2                 0.096   doublesex and mab-3 related transcription factor 2 ...
DMRTB1                0.065   DMRT-like family B with proline-rich C-terminal, 1 [...
DMRTC2                0.063   DMRT-like family C2 
FOXD1                 0.028   forkhead box D1 
ARX                   0.024   aristaless related homeobox 
CDC2L5                0.021   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.021   cell division cycle 2-like 5 isoform 2 
FOXI3                 0.021   forkhead box I3 
MAZ                   0.018   MYC-associated zinc finger protein isoform 2 
MAZ                   0.018   MYC-associated zinc finger protein isoform 1 
FMN1                  0.017   formin 1 
AEBP2                 0.016   AE binding protein 2 isoform b 
AEBP2                 0.016   AE binding protein 2 isoform a 
DIAPH2                0.016   diaphanous 2 isoform 12C 
DIAPH2                0.016   diaphanous 2 isoform 156 
FOXL2                 0.015   forkhead box L2 
PRKD1                 0.015   protein kinase D1 
FUSSEL18              0.015   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.015   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.015   PREDICTED: functional smad suppressing element 18 [...
TAF4                  0.015   TBP-associated factor 4 
SAMD1                 0.015   sterile alpha motif domain containing 1 
TOMM40                0.015   translocase of outer mitochondrial membrane 40 [Hom...
TOMM40                0.015   translocase of outer mitochondrial membrane 40 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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