LCA5 9434

Name: LCA5	Sequence: fasta or formatted (697aa)		NCBI GI: 170650670
Description: Leber congenital amaurosis 5		Referenced in: Centromere Proteins Crystallins and Other Eye Proteins
Other entries for this name: alt mRNA [697aa] Leber congenital amaurosis 5
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.9 34 2 C cysteine 0.4 3 1 D aspartate 5.6 39 2 E glutamate 12.5 87 4 F phenylalanine 3.6 25 2 G glycine 4.2 29 1 H histidine 2.4 17 2 I isoleucine 2.7 19 1 K lysine 10.3 72 2 L leucine 10.8 75 2 M methionine 1.3 9 1 N asparagine 4.9 34 2 P proline 4.9 34 1 Q glutamine 4.9 34 1 R arginine 7.7 54 2 S serine 9.8 68 3 T threonine 3.3 23 1 V valine 3.6 25 2 W tryptophan 0.4 3 1 Y tyrosine 1.9 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Leber congenital amaurosis 5 LCA5 1.000 Leber congenital amaurosis 5 LCA5L 0.132 Leber congenital amaurosis 5-like LOC283685 0.041 PREDICTED: golgi autoantigen, golgin subfamily a-li... LOC283685 0.038 PREDICTED: golgi autoantigen, golgin subfamily a-li... CCDC88A 0.036 coiled-coil domain containing 88A isoform 2 LOC283767 0.035 golgi autoantigen, golgin subfamily a-like LOC727832 0.034 golgi autoantigen, golgin subfamily a-like KTN1 0.034 kinectin 1 isoform a KTN1 0.034 kinectin 1 isoform c KTN1 0.034 kinectin 1 isoform a TCHH 0.034 trichohyalin CCDC88A 0.034 coiled-coil domain containing 88A isoform 1 KTN1 0.033 kinectin 1 isoform b GOLGA4 0.033 golgi autoantigen, golgin subfamily a, 4 LOC440243 0.031 PREDICTED: Putative golgin subfamily A member 6-lik... AKAP9 0.031 A-kinase anchor protein 9 isoform 2 AKAP9 0.031 A-kinase anchor protein 9 isoform 3 LOC645202 0.030 PREDICTED: hypothetical protein LOC645202 SMC1A 0.030 structural maintenance of chromosomes 1A MNS1 0.030 meiosis-specific nuclear structural 1 CROCC 0.030 ciliary rootlet coiled-coil GOLGB1 0.029 golgi autoantigen, golgin subfamily b, macrogolgin ... EIF3A 0.028 eukaryotic translation initiation factor 3, subunit 1... KIF20B 0.028 M-phase phosphoprotein 1 LOC400352 0.027 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.027 PREDICTED: similar to Putative golgin subfamily A m... ROCK2 0.027 Rho-associated, coiled-coil containing protein kinas... DSP 0.027 desmoplakin isoform I MYH11 0.027 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.