Search of human proteins with 169790777

Search of human proteins with 169790777

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169790777 hypothetical protein LOC54494 [Homo sapiens]
         (147 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169790777 hypothetical protein LOC54494 [Homo sapiens]             293   4e-80
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]          30   0.55 
gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]          30   0.95 
gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]          30   0.95 
gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]          30   0.95 
gi|11034843 ras homolog gene family, member U [Homo sapiens]           29   1.2  
gi|169183885 PREDICTED: similar to microtubule-associated protei...    29   1.6  
gi|239749117 PREDICTED: hypothetical protein XP_002346917 [Homo ...    29   1.6  
gi|145309328 papilin [Homo sapiens]                                    29   1.6  
gi|169169677 PREDICTED: hypothetical protein [Homo sapiens]            28   2.1  
gi|56550049 uromodulin precursor [Homo sapiens]                        28   2.1  
gi|59850812 uromodulin precursor [Homo sapiens]                        28   2.1  
gi|239755121 PREDICTED: hypothetical protein [Homo sapiens]            28   2.8  
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]            28   2.8  
gi|239749649 PREDICTED: hypothetical protein [Homo sapiens]            28   2.8  
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ...    28   2.8  
gi|239743922 PREDICTED: hypothetical protein XP_002342991 [Homo ...    28   2.8  
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ...    28   2.8  
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...    28   2.8  
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...    28   2.8  
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    28   2.8  
gi|46409372 G protein-coupled receptor 153 [Homo sapiens]              28   2.8  
gi|153791662 coiled-coil domain containing 71 [Homo sapiens]           28   2.8  
gi|78499633 phospholipase C, eta 2 [Homo sapiens]                      28   3.6  
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo sap...    28   3.6  
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]            28   3.6  
gi|45439370 TAO kinase 1 [Homo sapiens]                                28   3.6  
gi|61835232 growth differentiation factor 7 preproprotein [Homo ...    28   3.6  

>gi|169790777 hypothetical protein LOC54494 [Homo sapiens]
          Length = 147

 Score =  293 bits (750), Expect = 4e-80
 Identities = 147/147 (100%), Positives = 147/147 (100%)

Query: 1   MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPS 60
           MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPS
Sbjct: 1   MALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPS 60

Query: 61  VRAESRRVDGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIALGVTTWTL 120
           VRAESRRVDGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIALGVTTWTL
Sbjct: 61  VRAESRRVDGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRLIALGVTTWTL 120

Query: 121 KLSESATPDLRWCSTCSHSNIFEILVI 147
           KLSESATPDLRWCSTCSHSNIFEILVI
Sbjct: 121 KLSESATPDLRWCSTCSHSNIFEILVI 147


>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
          Length = 334

 Score = 30.4 bits (67), Expect = 0.55
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 13  QRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGG 72
           +R R +  SS+G  R R+ + +   G  + V R  +     R   RP +R+ SR  +   
Sbjct: 66  RRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRSSERS- 124

Query: 73  RSPREPDGRGRSRQAR 88
            S R    R R R+ R
Sbjct: 125 -SHRRTRSRSRDRERR 139


>gi|169214031 PREDICTED: hypothetical LOC646508 [Homo sapiens]
          Length = 560

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 21  SSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSP-REP- 78
           SSHG L+P   ALA+  G   L S+ E  H       RP    +    D   ++P +EP 
Sbjct: 333 SSHGALQPAMQALALGPG---LKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPA 389

Query: 79  -----DGRGRSRQARFSPYPIPAVEPDL 101
                  +  +++ARFS +  PA+   L
Sbjct: 390 PVPTQTFQNPAKKARFSSFQTPALRTQL 417


>gi|239751865 PREDICTED: hypothetical LOC646508 [Homo sapiens]
          Length = 528

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 21  SSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSP-REP- 78
           SSHG L+P   ALA+  G   L S+ E  H       RP    +    D   ++P +EP 
Sbjct: 301 SSHGALQPAMQALALGPG---LKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPA 357

Query: 79  -----DGRGRSRQARFSPYPIPAVEPDL 101
                  +  +++ARFS +  PA+   L
Sbjct: 358 PVPTQTFQNPAKKARFSSFQTPALRTQL 385


>gi|169213419 PREDICTED: hypothetical LOC646508 [Homo sapiens]
          Length = 560

 Score = 29.6 bits (65), Expect = 0.95
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 21  SSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSP-REP- 78
           SSHG L+P   ALA+  G   L S+ E  H       RP    +    D   ++P +EP 
Sbjct: 333 SSHGALQPAMQALALGPG---LKSQAEIKHPDADAKPRPQQVRKQCGQDSRTQAPDKEPA 389

Query: 79  -----DGRGRSRQARFSPYPIPAVEPDL 101
                  +  +++ARFS +  PA+   L
Sbjct: 390 PVPTQTFQNPAKKARFSSFQTPALRTQL 417


>gi|11034843 ras homolog gene family, member U [Homo sapiens]
          Length = 258

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 53 PRQAVRPSVRAESRRVDGGGRSPREPDGRGRS 84
          P +   P V     R   GGR P EP GRGR+
Sbjct: 11 PDRCEAPPVPPRRERGGRGGRGPGEPGGRGRA 42


>gi|169183885 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 157

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 73  RSPREPDGRGRSRQARFSPYPIPAVEPDLLRSVLQQRL 110
           R P+EP G  R R+ R  P   PA +    R   QQR+
Sbjct: 11  RRPQEPRGPSRRRRRRLDPRTRPAEKTFKQRRTFQQRV 48


>gi|239749117 PREDICTED: hypothetical protein XP_002346917 [Homo
           sapiens]
          Length = 136

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 34  AMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRG----RSRQARF 89
           A  +G G   + P A       A R    A + R  G GRS R P+G G    R      
Sbjct: 62  AAAAGQGATTTAPRAPAEARASAARALRTAGTERPCGDGRSQRSPEGGGGAGARGGAWPT 121

Query: 90  SPYPIP 95
           +P P+P
Sbjct: 122 APAPLP 127


>gi|145309328 papilin [Homo sapiens]
          Length = 1251

 Score = 28.9 bits (63), Expect = 1.6
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 8   LSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRR 67
           ++S  Q +R  Y   HG+    AS    +S      S   ++H GPR+  +P     S  
Sbjct: 746 VASVGQCNRFWYGGCHGNANNFASEQECMS------SCQGSLH-GPRRP-QPGASGRSTH 797

Query: 68  VDGGGRSP---REPDGRGRSRQARFSPYP 93
            DGGG SP   +EP         +  P+P
Sbjct: 798 TDGGGSSPAGEQEPSQHRTGAAVQRKPWP 826


>gi|169169677 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 167

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 31  SALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSRQARFS 90
           +A   V  +G+   +P+A   G RQA         +R+ G GR+ + P G   +R    S
Sbjct: 94  TARGRVRAEGYGRHQPKAP--GGRQAAPAMPSNRDQRLAGCGRAGKRPGGPNPARAGLSS 151

Query: 91  PY-----PIPAVEPD 100
           P      P+P++ P+
Sbjct: 152 PVWLVSSPLPSLPPN 166


>gi|56550049 uromodulin precursor [Homo sapiens]
          Length = 640

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 110 LIALGVTTWTLKLSESATPDLRWCSTCSHSN 140
           ++ + V +W +  + + T + RWCS C HSN
Sbjct: 9   MLMVVVASWFITTAATDTSEARWCSEC-HSN 38


>gi|59850812 uromodulin precursor [Homo sapiens]
          Length = 640

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 110 LIALGVTTWTLKLSESATPDLRWCSTCSHSN 140
           ++ + V +W +  + + T + RWCS C HSN
Sbjct: 9   MLMVVVASWFITTAATDTSEARWCSEC-HSN 38


>gi|239755121 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 339

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 51  LGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSRQARFS 90
           L PR + RP + +  RR DGGG   REP  RG  R+ R +
Sbjct: 304 LDPRGSRRPLLESR-RREDGGG---REPGIRGTRRRRRLT 339


>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 219

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 52  GPRQAVRPSVRAESRRVDGGGRSPREPDGRG--RSRQARFSP 91
           GP +  +P   +  R ++ G R PR+  G G   +R +R  P
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGP 162


>gi|239749649 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 339

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 51  LGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSRQARFS 90
           L PR + RP + +  RR DGGG   REP  RG  R+ R +
Sbjct: 304 LDPRGSRRPLLESR-RREDGGG---REPGIRGTRRRRRLT 339


>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
           sapiens]
          Length = 219

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 52  GPRQAVRPSVRAESRRVDGGGRSPREPDGRG--RSRQARFSP 91
           GP +  +P   +  R ++ G R PR+  G G   +R +R  P
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGP 162


>gi|239743922 PREDICTED: hypothetical protein XP_002342991 [Homo
           sapiens]
          Length = 339

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 51  LGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSRQARFS 90
           L PR + RP + +  RR DGGG   REP  RG  R+ R +
Sbjct: 304 LDPRGSRRPLLESR-RREDGGG---REPGIRGTRRRRRLT 339


>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
           sapiens]
          Length = 219

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 52  GPRQAVRPSVRAESRRVDGGGRSPREPDGRG--RSRQARFSP 91
           GP +  +P   +  R ++ G R PR+  G G   +R +R  P
Sbjct: 121 GPHRRRKPGAESPRRAIEAGARPPRQRPGAGTAAARASRAGP 162


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
           [Homo sapiens]
          Length = 2000

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 34  AMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGG-------RSPREPDGRGRSRQ 86
           A+ S      S P A+   P   ++P     ++  +G G       +SPR PDGR + R 
Sbjct: 227 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286

Query: 87  ARFSPYPI 94
            + +P  I
Sbjct: 287 KKMAPLKI 294


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
           [Homo sapiens]
          Length = 1966

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 34  AMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGG-------RSPREPDGRGRSRQ 86
           A+ S      S P A+   P   ++P     ++  +G G       +SPR PDGR + R 
Sbjct: 227 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 286

Query: 87  ARFSPYPI 94
            + +P  I
Sbjct: 287 KKMAPLKI 294


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
           [Homo sapiens]
          Length = 2059

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 34  AMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGG-------RSPREPDGRGRSRQ 86
           A+ S      S P A+   P   ++P     ++  +G G       +SPR PDGR + R 
Sbjct: 286 AVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKSPRVPDGRKKLRG 345

Query: 87  ARFSPYPI 94
            + +P  I
Sbjct: 346 KKMAPLKI 353


>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
          Length = 609

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 2   ALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSV 61
           AL ++ L +G +R R +  +   D  P  S     S +  L  RP A+  GPR A R S 
Sbjct: 423 ALAHLVLPAGPERRRASLLAFAEDAPP--SRARRRSAESLLSLRPSALDSGPRGA-RDSP 479

Query: 62  RAESRRVDGGG 72
               RR  G G
Sbjct: 480 PGSPRRRPGPG 490


>gi|153791662 coiled-coil domain containing 71 [Homo sapiens]
          Length = 467

 Score = 28.1 bits (61), Expect = 2.8
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 14  RSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGR 73
           +++VA     G  RP+ SA A  +  G   +RPE +    ++A         +R   G R
Sbjct: 352 KAKVARTQPRGRGRPKGSAKARTTRKG-QKNRPETVGQKRKRAEEAKDLPPKKRTRLGPR 410

Query: 74  SPREPDGRGRSRQARF 89
           SP+   G G ++  +F
Sbjct: 411 SPKAWLGPGTAKLLKF 426


>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
          Length = 1416

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 22/50 (44%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 66   RRVDGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLLRS-VLQQRLIALG 114
            RRV   G+ P EP G  R   A   P+P PAV  D   S  L QRL   G
Sbjct: 1092 RRVKSEGQVPTEPLGGWRPLAA---PFPAPAVYSDATGSDPLWQRLEPCG 1138


>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 27  RPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSR 85
           R   S L + S  G L  RP     G R + RP+V    R    GGR  R  +GRG  R
Sbjct: 88  RRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFR----GGRKGRLREGRGAVR 142


>gi|169163761 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 166

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 53  PRQAVRPSVRAESRRV---DGGGRSPREPDGRGRSRQARFSPYPIPAVEPDLL 102
           P+    PS R   R +   DGG RSP     R  SR A   P P P  +P+LL
Sbjct: 81  PKARAVPSFRTRLRDLRERDGGWRSPNRRCIRDLSRAALRLPQP-PPPQPNLL 132


>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 27  RPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSR 85
           R   S L + S  G L  RP     G R + RP+V    R    GGR  R  +GRG  R
Sbjct: 88  RRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFR----GGRKGRLREGRGALR 142


>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 373

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 27  RPRASALAMVSGDGFLVSRPEAIHLGPRQAVRPSVRAESRRVDGGGRSPREPDGRGRSR 85
           R   S L + S  G L  RP     G R + RP+V    R    GGR  R  +GRG  R
Sbjct: 88  RRPTSVLRLASPAGDLPRRPRPRAGGGRHSPRPAVGTIFR----GGRKGRLREGRGALR 142


>gi|45439370 TAO kinase 1 [Homo sapiens]
          Length = 1001

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 2   ALNNVSLSSGDQRSRVAYRSSHGDLRPRASALAMVSGDGFLVSRPEAIHLGPRQ 55
           ++ ++S+S+  Q S V   +S  D+    S L M+ GD  ++S    IHL P +
Sbjct: 353 SIPSMSISASSQSSSV---NSLPDVSDDKSELDMMEGDHTVMSNSSVIHLKPEE 403


>gi|61835232 growth differentiation factor 7 preproprotein [Homo
           sapiens]
          Length = 450

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 8   LSSGDQRSRVAYRSSHGDLRPRASALAM--VSGDGFLVSRPEAIHLGPRQAVRPSVRAES 65
           +SS  QR    +R      R   +ALA   +   G   + P A+ +G R+  R ++    
Sbjct: 270 VSSRTQRKESLFREIRAQARALGAALASEPLPDPGTGTASPRAV-IGGRRRRRTALAGTR 328

Query: 66  RRVDGGGRSPREPDGRGRSRQAR 88
                GG + R    RGRSR +R
Sbjct: 329 TAQGSGGGAGRGHGRRGRSRCSR 351


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,773,683
Number of Sequences: 37866
Number of extensions: 270051
Number of successful extensions: 1117
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 75
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.