| Name: SSPN | Sequence: fasta or formatted (243aa) | NCBI GI: 16933561 | |
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Description: sarcospan isoform 1
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Referenced in:
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Other entries for this name:
alt prot [140aa] sarcospan isoform 2 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.4 18 2 C cysteine 6.6 16 2 D aspartate 3.3 8 2 E glutamate 3.7 9 3 F phenylalanine 5.3 13 1 G glycine 7.4 18 2 H histidine 1.2 3 2 I isoleucine 3.7 9 2 K lysine 4.1 10 2 L leucine 14.0 34 3 M methionine 2.9 7 1 N asparagine 0.8 2 1 P proline 4.9 12 2 Q glutamine 5.8 14 2 R arginine 4.1 10 1 S serine 6.2 15 3 T threonine 6.6 16 2 V valine 8.2 20 2 W tryptophan 0.8 2 1 Y tyrosine 2.9 7 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 sarcospan isoform 1 SSPN 0.556 sarcospan isoform 2 FAM189A1 0.051 hypothetical protein LOC23359 MS4A6A 0.023 membrane-spanning 4-domains, subfamily A, member 6A ... MS4A6A 0.023 membrane-spanning 4-domains, subfamily A, member 6A ... MEPCE 0.015 bin3, bicoid-interacting 3 CLDN6 0.013 claudin 6 FMN2 0.013 formin 2 SLC22A20 0.013 solute carrier family 22, member 20 CLDN9 0.011 claudin 9 SCN4A 0.011 voltage-gated sodium channel type 4 alpha VKORC1L1 0.011 vitamin K epoxide reductase complex, subunit 1-like ... ZFPM1 0.011 zinc finger protein, multitype 1 SETD8 0.008 SET domain-containing 8 DNMT3A 0.008 DNA cytosine methyltransferase 3 alpha isoform a [Ho... DNMT3A 0.008 DNA cytosine methyltransferase 3 alpha isoform a [Ho... C14orf79 0.008 hypothetical protein LOC122616 CLDN1 0.006 claudin 1 PPAPDC1A 0.006 phosphatidic acid phosphatase type 2 domain containi... NPFFR1 0.006 neuropeptide FF receptor 1 HTRA1 0.006 HtrA serine peptidase 1 precursor SLC2A11 0.006 glucose transporter protein 10 isoform a SLC2A11 0.006 glucose transporter protein 10 isoform c SLC2A11 0.006 glucose transporter protein 10 isoform b OR13H1 0.006 olfactory receptor, family 13, subfamily H, member 1... LOC651986 0.006 PREDICTED: similar to forkhead box L2 ABCA8 0.006 ATP-binding cassette, sub-family A member 8 CC2D2A 0.006 coiled-coil and C2 domain containing 2A isoform a [...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
