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Search of human proteins with 16933561
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16933561 sarcospan isoform 1 [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16933561 sarcospan isoform 1 [Homo sapiens] 498 e-141
gi|209529678 sarcospan isoform 2 [Homo sapiens] 288 2e-78
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 49 5e-06
gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A ... 36 0.027
gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A ... 36 0.027
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 32 0.65
gi|153792768 claudin 6 [Homo sapiens] 31 0.85
gi|160707881 formin 2 [Homo sapiens] 31 0.85
gi|238814326 solute carrier family 22, member 20 [Homo sapiens] 31 1.1
gi|11141861 claudin 9 [Homo sapiens] 30 1.5
gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapi... 30 1.5
gi|46309463 vitamin K epoxide reductase complex, subunit 1-like ... 30 1.9
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 30 2.5
gi|45356743 SET domain-containing 8 [Homo sapiens] 29 3.2
gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 29 3.2
gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 29 3.2
gi|110349765 hypothetical protein LOC122616 [Homo sapiens] 29 3.2
gi|10863887 claudin 1 [Homo sapiens] 28 5.5
gi|73611920 phosphatidic acid phosphatase type 2 domain containi... 28 5.5
gi|11545887 neuropeptide FF receptor 1 [Homo sapiens] 28 5.5
gi|4506141 HtrA serine peptidase 1 precursor [Homo sapiens] 28 7.2
gi|190684655 glucose transporter protein 10 isoform a [Homo sapi... 28 7.2
gi|68226420 glucose transporter protein 10 isoform c [Homo sapiens] 28 7.2
gi|68226418 glucose transporter protein 10 isoform b [Homo sapiens] 28 7.2
gi|52218868 olfactory receptor, family 13, subfamily H, member 1... 28 7.2
gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens] 28 9.4
gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo sap... 28 9.4
gi|197209974 coiled-coil and C2 domain containing 2A isoform a [... 28 9.4
>gi|16933561 sarcospan isoform 1 [Homo sapiens]
Length = 243
Score = 498 bits (1283), Expect = e-141
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ 60
MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ
Sbjct: 1 MGKNKQPRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEEEPRTCCGCRFPLLLALLQ 60
Query: 61 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS 120
LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS
Sbjct: 61 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFS 120
Query: 121 MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD 180
MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD
Sbjct: 121 MKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSRTFVYRD 180
Query: 181 VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ 240
VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ
Sbjct: 181 VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVGVRICSLTASEGPQ 240
Query: 241 QKI 243
QKI
Sbjct: 241 QKI 243
>gi|209529678 sarcospan isoform 2 [Homo sapiens]
Length = 140
Score = 288 bits (738), Expect = 2e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 104 MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ 163
MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ
Sbjct: 1 MLCVSYQVDERTCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQ 60
Query: 164 CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV 223
CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV
Sbjct: 61 CKLPSSEPLSRTFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQV 120
Query: 224 FYVGVRICSLTASEGPQQKI 243
FYVGVRICSLTASEGPQQKI
Sbjct: 121 FYVGVRICSLTASEGPQQKI 140
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 48.5 bits (114), Expect = 5e-06
Identities = 57/198 (28%), Positives = 83/198 (41%), Gaps = 16/198 (8%)
Query: 27 MEPKKGTGAPKECGEEEP----RTCCG-CRFPLLLALLQLALGIAVTVVGFLMASISSSL 81
M P G AP+ R C G R L L Q+ALG + V F ++++S
Sbjct: 1 MPPAGGPRAPRPAALPRSLSRLRECPGRSRIVLALGATQMALGCLIVAVSFAALALTTSA 60
Query: 82 LVRDT-PFWAGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKL--LYFLLSALG-LTVCV 137
VR + PFWAG V L +G+ VS++ I F M L + +L+ G + C
Sbjct: 61 RVRHSCPFWAGFSVLLSGLIGV----VSWKRPLSLVITFFMLLSAVCVMLNLAGSILSCQ 116
Query: 138 LAVAFAAHHYSQLTQFTCETTLDSCQCKLPSS--EPLSRTFVYRDVTD-CTSVTGTFKLF 194
A + QL +F C+ + SS L T + + C +V T K
Sbjct: 117 NAQLVNSLEGCQLIKFDSVEVCVCCELQHQSSGCSNLGETLKLNPLQENCNAVRLTLKDL 176
Query: 195 LLIQMILNLVCGLVCLLA 212
L LN++ +VC LA
Sbjct: 177 LFSVCALNVLSTIVCALA 194
>gi|23238234 membrane-spanning 4-domains, subfamily A, member 6A
isoform 2 [Homo sapiens]
Length = 225
Score = 36.2 bits (82), Expect = 0.027
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 13/176 (7%)
Query: 55 LLALLQLALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDER 114
++ +Q+ G+ V +G ++AS S S T + ++ ++G F +S +
Sbjct: 47 VIGTIQILCGMMVLSLGIILASASFS--PNFTQVTSTLLNSAYPFIGPFFFIISGSLSIA 104
Query: 115 TCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSR 174
T + + L++ L L+ V F Q T S QC+L + +R
Sbjct: 105 TEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQATLNPA-----SLQCELDKNNIPTR 159
Query: 175 TFV---YRD---VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVF 224
++V Y D TDC + + L + +I L+ + +L + WK Y F
Sbjct: 160 SYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAVLRWKQAYSDF 215
>gi|23238238 membrane-spanning 4-domains, subfamily A, member 6A
isoform 1 [Homo sapiens]
Length = 248
Score = 36.2 bits (82), Expect = 0.027
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 13/176 (7%)
Query: 55 LLALLQLALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLFMLCVSYQVDER 114
++ +Q+ G+ V +G ++AS S S T + ++ ++G F +S +
Sbjct: 47 VIGTIQILCGMMVLSLGIILASASFS--PNFTQVTSTLLNSAYPFIGPFFFIISGSLSIA 104
Query: 115 TCIQFSMKLLYFLLSALGLTVCVLAVAFAAHHYSQLTQFTCETTLDSCQCKLPSSEPLSR 174
T + + L++ L L+ V F Q T S QC+L + +R
Sbjct: 105 TEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQATLNPA-----SLQCELDKNNIPTR 159
Query: 175 TFV---YRD---VTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVF 224
++V Y D TDC + + L + +I L+ + +L + WK Y F
Sbjct: 160 SYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAVLRWKQAYSDF 215
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 31.6 bits (70), Expect = 0.65
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 7 PRGQQRQGGPPAADAAGPDDMEPKKGTGAPKECGEE 42
P+ QQ +GG P A + G + G AP + GEE
Sbjct: 80 PQAQQHRGGGPQAQSHGEARLSDPPGRAAPPDVGEE 115
>gi|153792768 claudin 6 [Homo sapiens]
Length = 220
Score = 31.2 bits (69), Expect = 0.85
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 63 LGIAVTVVGFLMASISSSLLVRDTPFWAG--IIVCLVAYLGLFMLCVSYQVDERTCIQFS 120
LG+ +T++G++ +S +L + + G I+V V + GL+M CV + C +
Sbjct: 9 LGVVLTLLGWVNGLVSCALPMWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYD 68
Query: 121 --MKLLYFLLSALGLTVCVLAVA 141
+ L L +A L V L VA
Sbjct: 69 SLLALPQDLQAARALCVIALLVA 91
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 31.2 bits (69), Expect = 0.85
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 2 GKNKQPRGQQ-RQGGPPAADAAGPDDME-PKKGTGAPKECGE 41
GK K+ G +GG A DA GP D+E KKG+G K G+
Sbjct: 6 GKLKRSAGDALHEGGGGAEDALGPRDVEATKKGSGGKKALGK 47
>gi|238814326 solute carrier family 22, member 20 [Homo sapiens]
Length = 555
Score = 30.8 bits (68), Expect = 1.1
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 49 GCRFPLLLALLQLALGIAVT----------VVGFLMASISSSLLVRDTPF---W------ 89
GC+ PL+ + LQLA A T V FLM S +++ W
Sbjct: 162 GCKGPLVWSYLQLAASGAATAYFSSFSAYCVFRFLMGMTFSGIILNSVSLVVEWMPTRGR 221
Query: 90 --AGIIVCLVAYLGLFMLC-VSYQVDERTCIQFSMK---LLYFLLS 129
AGI++ LG +L V+Y + C+QF++ L++FL S
Sbjct: 222 TVAGILLGYSFTLGQLILAGVAYLIRPWRCLQFAISAPFLIFFLYS 267
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 63 LGIAVTVVGFLMASISSSLLVRDTPFWAG--IIVCLVAYLGLFMLCVSYQVDERTCIQFS 120
LG+ + V+G+L +S +L + + G I+V V + GL+M CV + C +
Sbjct: 9 LGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYD 68
Query: 121 MKLLYFLLSALGLTVCVLAVAFA 143
L +CV+A+ A
Sbjct: 69 SLLALPQDLQAARALCVIALLLA 91
>gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapiens]
Length = 1836
Score = 30.4 bits (67), Expect = 1.5
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 22 AGPDDMEPK---KGTGAPKECGEEEPRTCCGCRFPLLLALLQLALGIAVTVVGFLMASIS 78
+GP D +P GT +CG C C + ++ L+ + + IA+ + F +A+
Sbjct: 1548 SGPPDCDPNLENPGTSVKGDCGNPSIGICFFCSYIIISFLIVVNMYIAIILENFNVATEE 1607
Query: 79 SS 80
SS
Sbjct: 1608 SS 1609
>gi|46309463 vitamin K epoxide reductase complex, subunit 1-like 1
[Homo sapiens]
Length = 176
Score = 30.0 bits (66), Expect = 1.9
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 52 FPLLLALLQLALGIAVTVVGFLMASISSSLLVRDTPFWAGI---------IVCLVAY-LG 101
F L+ +LQL LG+ + V L+ SS + V + + A I I+C+V Y L
Sbjct: 90 FGLIFYILQLLLGMTASAVAALILMTSSIMSVVGSLYLAYILYFVLKEFCIICIVTYVLN 149
Query: 102 LFMLCVSYQ 110
+L ++Y+
Sbjct: 150 FLLLIINYK 158
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 16 PPAADAAGPDDMEPKKGTGAPKECGEEEP 44
PP+AD P + P G PKE +EP
Sbjct: 45 PPSADVNSPPPLPPPTSPGGPKELEGQEP 73
>gi|45356743 SET domain-containing 8 [Homo sapiens]
Length = 352
Score = 29.3 bits (64), Expect = 3.2
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 13/49 (26%)
Query: 18 AADAAGPDDMEPKKGTGAPKECGEE------------EPRTCCGCRFPL 54
AA A GP+ +E ++G G P+ GE P C G RFPL
Sbjct: 23 AATAPGPEMVE-RRGPGRPRTDGENVFTGQSKIYSYMSPNKCSGMRFPL 70
>gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 29.3 bits (64), Expect = 3.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 7 PRGQQRQGGPPAADAAGPDDME-----------PKKGTGAPKECGEEEPRT 46
P G Q+ G P + A E PK+G GAP E G+E+ T
Sbjct: 106 PAGGQKGGAPAEGEGAAETLPEASRAVENGCCTPKEGRGAPAEAGKEQKET 156
>gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 29.3 bits (64), Expect = 3.2
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 11/51 (21%)
Query: 7 PRGQQRQGGPPAADAAGPDDME-----------PKKGTGAPKECGEEEPRT 46
P G Q+ G P + A E PK+G GAP E G+E+ T
Sbjct: 106 PAGGQKGGAPAEGEGAAETLPEASRAVENGCCTPKEGRGAPAEAGKEQKET 156
>gi|110349765 hypothetical protein LOC122616 [Homo sapiens]
Length = 325
Score = 29.3 bits (64), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 23 GPDDMEPKKGTGAPKECGEEEP 44
GP + +P + T APKEC +P
Sbjct: 103 GPTEPQPPRTTSAPKECSSHQP 124
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 28.5 bits (62), Expect = 5.5
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 59 LQLALGIAVTVVGFLMASISSSLLVRDTPFWAG--IIVCLVAYLGLFMLCVSYQVDERTC 116
LQL LG + +G++ A +S++L +AG I+ Y GL+M CVS + C
Sbjct: 6 LQL-LGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQC 64
Query: 117 IQFSMKLLYFLLSALGLTVCVLAV 140
F L L S L T ++ V
Sbjct: 65 KVFDS--LLNLSSTLQATRALMVV 86
>gi|73611920 phosphatidic acid phosphatase type 2 domain containing
1A [Homo sapiens]
Length = 271
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 175 TFVYRDVTDCTSVTGTFKLFLLIQMILNLVCGLVCLLACFVMWKHRYQVFYVG 227
TF C + +G K + L IL L C ++ L+ +KH +Q +VG
Sbjct: 158 TFYLAGKLHCFTESGRGKSWRLCAAILPLYCAMMIALSRMCDYKHHWQDSFVG 210
>gi|11545887 neuropeptide FF receptor 1 [Homo sapiens]
Length = 430
Score = 28.5 bits (62), Expect = 5.5
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 168 SSEPLSRTFVYRDVTDCTSVTGTF---------KLFLLIQMILNLVCGLVCLLACFVMWK 218
SS PLS+ + T T++T + +F++ ++ L+C + L CF++ K
Sbjct: 11 SSWPLSQNGTNTEATPATNLTFSSYYQHTSPVAAMFIVAYALIFLLCMVGNTLVCFIVLK 70
Query: 219 HRYQVFYVGVRICSLTASE 237
+R+ + I +L S+
Sbjct: 71 NRHMHTVTNMFILNLAVSD 89
>gi|4506141 HtrA serine peptidase 1 precursor [Homo sapiens]
Length = 480
Score = 28.1 bits (61), Expect = 7.2
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 10 QQRQGGPPAADAAG-PDDMEPKKGTGAPKECGEEEPRTCCGC 50
Q + G A AAG PD EP + P+ C R CGC
Sbjct: 23 QLSRAGRSAPLAAGCPDRCEPARCPPQPEHCEGGRARDACGC 64
>gi|190684655 glucose transporter protein 10 isoform a [Homo
sapiens]
Length = 503
Score = 28.1 bits (61), Expect = 7.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 44 PRTCCGCRFPLLLALLQLALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLF 103
P C C + + L+ + LG F+M ++S L V PF G+ VC Y GLF
Sbjct: 412 PAACMVCGALMWIMLILVGLGFP-----FIMEALSHFLYV---PF-LGVCVCGAIYTGLF 462
Query: 104 M 104
+
Sbjct: 463 L 463
>gi|68226420 glucose transporter protein 10 isoform c [Homo sapiens]
Length = 496
Score = 28.1 bits (61), Expect = 7.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 44 PRTCCGCRFPLLLALLQLALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLF 103
P C C + + L+ + LG F+M ++S L V PF G+ VC Y GLF
Sbjct: 405 PAACMVCGALMWIMLILVGLGFP-----FIMEALSHFLYV---PF-LGVCVCGAIYTGLF 455
Query: 104 M 104
+
Sbjct: 456 L 456
>gi|68226418 glucose transporter protein 10 isoform b [Homo sapiens]
Length = 499
Score = 28.1 bits (61), Expect = 7.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 44 PRTCCGCRFPLLLALLQLALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLGLF 103
P C C + + L+ + LG F+M ++S L V PF G+ VC Y GLF
Sbjct: 408 PAACMVCGALMWIMLILVGLGFP-----FIMEALSHFLYV---PF-LGVCVCGAIYTGLF 458
Query: 104 M 104
+
Sbjct: 459 L 459
>gi|52218868 olfactory receptor, family 13, subfamily H, member 1
[Homo sapiens]
Length = 308
Score = 28.1 bits (61), Expect = 7.2
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 61 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYL--GLFMLCVSYQVDERTCIQ 118
+A+ V FL+ IS+ RDT F +I+ L L G + + + + T I
Sbjct: 1 MAMDNVTAVFQFLLIGISNYPQWRDTFFTLVLIIYLSTLLGNGFMIFLIHFDPNLHTPIY 60
Query: 119 FSMKLLYFLLSALGLTVC--VLAVAFAAHHYSQ----LTQFTCETTLDSCQCKL 166
F + L FL G L F+ H Y L Q + L + +C L
Sbjct: 61 FFLSNLSFLDLCYGTASMPQALVHCFSTHPYLSYPRCLAQTSVSLALATAECLL 114
>gi|169171269 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 632
Score = 27.7 bits (60), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 3 KNKQPRGQQRQG--GPPAADA---AGPDDMEPKKGTGAPKECGEEEP 44
+ ++ RG +R+G GP A A +GP ++ +G AP GE P
Sbjct: 127 RRRRRRGPKREGPRGPRAGGAQGPSGPSELPAAQGRLAPDSAGEGAP 173
>gi|6005701 ATP-binding cassette, sub-family A member 8 [Homo
sapiens]
Length = 1581
Score = 27.7 bits (60), Expect = 9.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 74 MASISSSLLVRDTPFW-------AGIIVCLVAYLGLFMLCVSYQVDERTCIQFSMKLLYF 126
M ++ + + +RD+ FW AG I + +L L + + + + FS+ LLY
Sbjct: 251 MKALMTMMGLRDSAFWLSWGLLYAGFIFIMALFLALVIRSTQFIILSGFMVVFSLFLLYG 310
Query: 127 L-LSALGLTVCVL 138
L L AL + +L
Sbjct: 311 LSLVALAFLMSIL 323
>gi|197209974 coiled-coil and C2 domain containing 2A isoform a
[Homo sapiens]
Length = 1620
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 3 KNKQPRGQQRQGGPPAADAAGPDDMEPKKG-TGAPKECGEEEPRT 46
KN + R Q R+ PP A P +M +K G P+E +EEP+T
Sbjct: 29 KNSKVRRQPRKKQPPTAV---PKEMVSEKSHLGNPQEPVQEEPKT 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,636
Number of Sequences: 37866
Number of extensions: 447333
Number of successful extensions: 2183
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2166
Number of HSP's gapped (non-prelim): 36
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.