Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC732419 Sequence: fasta or formatted (284aa) NCBI GI: 169218287
Description:

PREDICTED: similar to belphegor

Referenced in:

Metalloproteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         26           2
 C cysteine            4.6         13           1
 D aspartate           4.2         12           1
 E glutamate           5.3         15           2
 F phenylalanine       3.5         10           1
 G glycine             8.5         24           3
 H histidine           2.5          7           1
 I isoleucine          1.8          5           1
 K lysine              3.5         10           1
 L leucine            13.0         37           3
 M methionine          3.9         11           2
 N asparagine          1.8          5           1
 P proline             6.0         17           2
 Q glutamine           4.6         13           2
 R arginine            7.0         20           2
 S serine              7.0         20           1
 T threonine           4.9         14           1
 V valine              4.9         14           1
 W tryptophan          2.1          6           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to belphegor 
ATAD3B                0.851   AAA-ATPase  TOB3 
ATAD3A                0.490   ATPase family, AAA domain containing 3A 
ATAD3C                0.462   ATPase family, AAA domain containing 3C 
PSMC6                 0.041   proteasome 26S ATPase subunit 6 
ATAD1                 0.039   ATPase family, AAA domain containing 1 
KATNAL2               0.037   katanin p60 subunit A-like 2 
VPS4A                 0.037   vacuolar protein sorting factor 4A 
VPS4B                 0.037   vacuolar protein sorting factor 4B 
SPG7                  0.034   spastic paraplegia 7 isoform 1 
SPAST                 0.030   spastin isoform 2 
SPAST                 0.030   spastin isoform 1 
KATNA1                0.028   katanin p60 subunit A 1 
YME1L1                0.025   YME1-like 1 isoform 1 
YME1L1                0.025   YME1-like 1 isoform 3 
PSMC3                 0.025   proteasome 26S ATPase subunit 3 
AFG3L2                0.021   AFG3 ATPase family gene 3-like 2 
FIGNL1                0.018   fidgetin-like 1 
FIGNL1                0.018   fidgetin-like 1 
PSMC1                 0.016   proteasome 26S ATPase subunit 1 
PSMC5                 0.014   proteasome 26S ATPase subunit 5 
GP1BB                 0.014   glycoprotein Ib, beta polypeptide precursor 
ATAD2B                0.014   ATPase family, AAA domain containing 2B 
PSMC2                 0.012   proteasome 26S ATPase subunit 2 
ATAD2                 0.012   ATPase family, AAA domain containing 2 
NKX1-2                0.009   NK1 homeobox 2 
NVL                   0.009   nuclear VCP-like isoform 2 
NVL                   0.009   nuclear VCP-like isoform 1 
ARMC5                 0.007   armadillo repeat containing 5 isoform b 
ARMC5                 0.007   armadillo repeat containing 5 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press