Guide to the Human Genome
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Name: LOC100133500 Sequence: fasta or formatted (309aa) NCBI GI: 169216125
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {322aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         22           2
 C cysteine            2.6          8           1
 D aspartate           1.9          6           1
 E glutamate           3.6         11           1
 F phenylalanine       3.2         10           1
 G glycine             8.4         26           1
 H histidine           3.2         10           2
 I isoleucine          1.6          5           1
 K lysine              2.6          8           1
 L leucine            12.3         38           2
 M methionine          1.0          3           1
 N asparagine          3.9         12           1
 P proline            14.9         46           6
 Q glutamine           1.9          6           1
 R arginine            9.1         28           3
 S serine             10.0         31           2
 T threonine           5.8         18           1
 V valine              4.2         13           1
 W tryptophan          1.9          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133500          0.852   PREDICTED: hypothetical protein 
LOC643355             0.030   PREDICTED: hypothetical protein 
LOC643355             0.030   PREDICTED: hypothetical protein 
TRIM8                 0.022   tripartite motif-containing 8 
AHDC1                 0.021   AT hook, DNA binding motif, containing 1 
AUTS2                 0.019   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.019   autism susceptibility candidate 2 isoform 1 
MCTP1                 0.019   multiple C2 domains, transmembrane 1 isoform L [Hom...
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, ca...
KIAA0467              0.019   hypothetical protein LOC23334 
LOC100290372          0.018   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.018   PREDICTED: hypothetical protein XP_002342652 
LOC100288243          0.016   PREDICTED: hypothetical protein 
LOC100288243          0.016   PREDICTED: hypothetical protein XP_002342233 
FAM65A                0.016   hypothetical protein LOC79567 
DCAF10                0.016   WD repeat domain 32 
LOC100292845          0.016   PREDICTED: hypothetical protein 
LOC100289230          0.016   PREDICTED: hypothetical protein XP_002342600 
C6orf134              0.016   hypothetical protein LOC79969 isoform 2 
KIAA1522              0.016   hypothetical protein LOC57648 
LOC100293818          0.014   PREDICTED: hypothetical protein 
B4GALNT4              0.014   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
NANOS1                0.014   nanos homolog 1 
FAM90A1               0.014   hypothetical protein LOC55138 
FOXB2                 0.014   forkhead box B2 
ZFP36                 0.013   zinc finger protein 36, C3H type, homolog 
LOC100292184          0.013   PREDICTED: hypothetical protein 
LOC645602             0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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