C16orf88 923

Name: C16orf88	Sequence: fasta or formatted (458aa)		NCBI GI: 111607441
Description: hypothetical protein LOC400506		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 32 2 C cysteine 0.7 3 1 D aspartate 5.7 26 2 E glutamate 9.0 41 3 F phenylalanine 2.6 12 1 G glycine 6.3 29 2 H histidine 2.2 10 1 I isoleucine 2.2 10 1 K lysine 17.5 80 8 L leucine 5.9 27 1 M methionine 2.0 9 1 N asparagine 2.4 11 2 P proline 6.3 29 1 Q glutamine 3.7 17 2 R arginine 5.9 27 2 S serine 8.3 38 2 T threonine 4.6 21 2 V valine 5.5 25 2 W tryptophan 1.1 5 1 Y tyrosine 1.3 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 hypothetical protein LOC400506 NEFH 0.050 neurofilament, heavy polypeptide 200kDa EIF5B 0.040 eukaryotic translation initiation factor 5B TRDN 0.040 triadin ABCF1 0.034 ATP-binding cassette, sub-family F, member 1 isoform... ABCF1 0.032 ATP-binding cassette, sub-family F, member 1 isoform... SFRS11 0.032 splicing factor, arginine/serine-rich 11 LOC100133599 0.031 PREDICTED: hypothetical protein ANKRD11 0.030 ankyrin repeat domain 11 CD3EAP 0.029 CD3E antigen, epsilon polypeptide associated protein ... NEFM 0.028 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.028 neurofilament, medium polypeptide 150kDa isoform 2 ... CALD1 0.028 caldesmon 1 isoform 1 CYLC2 0.027 cylicin 2 RSRC2 0.026 arginine/serine-rich coiled-coil 2 isoform a PINX1 0.025 PIN2-interacting protein 1 CHD7 0.025 chromodomain helicase DNA binding protein 7 LOC100294088 0.025 PREDICTED: hypothetical protein, partial TCHH 0.025 trichohyalin GTF2F1 0.025 general transcription factor IIF, polypeptide 1, 74... MAP1B 0.023 microtubule-associated protein 1B FAM133A 0.023 hypothetical protein LOC286499 WDR87 0.022 NYD-SP11 protein LOC100133599 0.022 PREDICTED: hypothetical protein TTF1 0.022 transcription termination factor, RNA polymerase I [... BASP1 0.021 brain abundant, membrane attached signal protein 1 [... NOP56 0.021 nucleolar protein 5A IWS1 0.021 IWS1 homolog CYLC1 0.021 cylicin, basic protein of sperm head cytoskeleton 1... PRUNE2 0.021 prune homolog 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.