Guide to the Human Genome
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Name: LOC100128682 Sequence: fasta or formatted (299aa) NCBI GI: 169213267
Description:

PREDICTED: hypothetical protein LOC100128682

Not currently referenced in the text

Other entries for this name:
alt mRNA {299aa} PREDICTED: hypothetical protein LOC100128682
alt mRNA {299aa} PREDICTED: hypothetical protein LOC100128682
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         16           1
 C cysteine            5.7         17           2
 D aspartate           4.0         12           2
 E glutamate           3.3         10           1
 F phenylalanine       4.3         13           2
 G glycine             8.0         24           3
 H histidine           2.3          7           2
 I isoleucine          2.0          6           1
 K lysine              3.0          9           1
 L leucine             9.7         29           2
 M methionine          1.7          5           1
 N asparagine          1.3          4           1
 P proline             9.7         29           4
 Q glutamine           4.7         14           1
 R arginine            6.4         19           2
 S serine             13.0         39           4
 T threonine           4.3         13           1
 V valine              7.4         22           3
 W tryptophan          3.3         10           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          1.000   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          1.000   PREDICTED: hypothetical protein LOC100128682 
LOC100128260          0.134   PREDICTED: hCG_1742852 
LOC100128260          0.134   PREDICTED: hCG_1742852 
LOC100288773          0.127   PREDICTED: hypothetical protein XP_002343911 
LOC100128260          0.127   PREDICTED: hCG_1742852 
UTY                   0.116   tetratricopeptide repeat protein isoform 1 
C16orf89              0.088   hypothetical protein LOC146556 isoform 1 
SEPSECS               0.072   Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN...
ZNF283                0.060   zinc finger protein 283 
PPIL3                 0.044   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
C15orf40              0.039   hypothetical protein LOC123207 isoform d 
BEND2                 0.039   BEN domain containing 2 
ITGB1                 0.038   integrin beta 1 isoform 1C-1 precursor 
CSF2RA                0.038   colony stimulating factor 2 receptor alpha chain is...
ZNF573                0.038   zinc finger protein 573 
STAP2                 0.036   signal transducing adaptor family member 2 isoform 1...
SLC39A14              0.034   solute carrier family 39 (zinc transporter), member...
MAP3K15               0.034   mitogen-activated protein kinase kinase kinase 15 [...
LOC100132815          0.031   PREDICTED: hypothetical protein 
LOC100132815          0.031   PREDICTED: hypothetical protein 
LOC100132815          0.031   PREDICTED: hypothetical protein 
ZNF195                0.029   zinc finger protein 195 isoform 2 
ZNF195                0.029   zinc finger protein 195 isoform 1 
ITGB1                 0.028   integrin beta 1 isoform 1C-2 precursor 
CASP7                 0.026   caspase 7 isoform beta 
C9orf37               0.026   chromosome 9 open reading frame 37 
RUNDC2B               0.026   RUN domain containing 2B 
C14orf178             0.023   hypothetical protein LOC283579 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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