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Search of human proteins with 169211171
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211171 PREDICTED: hypothetical protein [Homo sapiens] 368 e-102
gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo ... 55 2e-08
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 40 0.001
gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo ... 40 0.001
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 37 0.007
gi|82830432 sex comb on midleg-like 1 isoform a [Homo sapiens] 35 0.025
gi|82830436 sex comb on midleg-like 1 isoform c [Homo sapiens] 35 0.025
gi|82830430 sex comb on midleg-like 1 isoform c [Homo sapiens] 35 0.025
gi|82830426 sex comb on midleg-like 1 isoform b [Homo sapiens] 35 0.025
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 34 0.072
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 33 0.16
gi|41350201 epsin 1 isoform c [Homo sapiens] 33 0.16
gi|194248095 epsin 1 isoform b [Homo sapiens] 32 0.27
gi|194272148 epsin 1 isoform a [Homo sapiens] 32 0.27
gi|4503825 frizzled 1 [Homo sapiens] 31 0.47
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 31 0.47
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 31 0.47
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 30 0.80
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 30 0.80
gi|29789054 FCH domain only 1 isoform b [Homo sapiens] 30 0.80
gi|239049440 FCH domain only 1 isoform a [Homo sapiens] 30 0.80
gi|19923812 oxysterol-binding protein-like protein 10 [Homo sapi... 30 0.80
gi|126091130 Gab3 protein isoform 1 [Homo sapiens] 30 1.0
gi|18079323 Gab3 protein isoform 2 [Homo sapiens] 30 1.0
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 29 1.8
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 29 1.8
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 29 1.8
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 29 1.8
gi|39777614 SS18-like protein 1 [Homo sapiens] 29 1.8
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 29 2.3
>gi|169211171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 368 bits (944), Expect = e-102
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MQADRSLRSRGHDFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLST 60
MQADRSLRSRGHDFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLST
Sbjct: 1 MQADRSLRSRGHDFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLST 60
Query: 61 PWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAP 120
PWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAP
Sbjct: 61 PWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAP 120
Query: 121 GSQAATPLNNSGYAEEGRLALQPWRWLDQGSSTGQRGRGGHRRPKAKPPGVRS 173
GSQAATPLNNSGYAEEGRLALQPWRWLDQGSSTGQRGRGGHRRPKAKPPGVRS
Sbjct: 121 GSQAATPLNNSGYAEEGRLALQPWRWLDQGSSTGQRGRGGHRRPKAKPPGVRS 173
>gi|239743781 PREDICTED: hypothetical protein XP_002344297 [Homo
sapiens]
Length = 228
Score = 55.5 bits (132), Expect = 2e-08
Identities = 26/44 (59%), Positives = 28/44 (63%)
Query: 2 QADRSLRSRGHDFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSW 45
Q D SL S+G FWGDSP HRP PEAG+P P VSSSW
Sbjct: 154 QGDLSLTSQGRHFWGDSPAHRPRTPEAGIPRCLPGDLSEVSSSW 197
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 40.0 bits (92), Expect = 0.001
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 45 WSALCDSWQPEMFLSTPWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGITVTGACA 104
WS+ +SW+PE + P R + H +P+GR K +T +C+
Sbjct: 36 WSSKHNSWEPEENILDP-RLLLAFQKKEHEKEVQNRKRGKRPRGRPRK----LTAMSSCS 90
Query: 105 RALRMRIGGAESHSAPGSQAATPLNNSGYAEEG 137
R ++++GG ++ P SQ PL G EG
Sbjct: 91 RRSKLKVGGCAGYADPTSQ--HPLGVGGRQREG 121
>gi|239743739 PREDICTED: hypothetical protein XP_002342949 [Homo
sapiens]
Length = 94
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 95 VGITVTGACARALRMRIGGAESHSAP----GSQAATPLNNSGYAEEGR-----LALQPWR 145
V +TVT A ARA RMR G A+S + P SQAA L N G A L +
Sbjct: 2 VAVTVTKAAARASRMRTGEADSPAPPPLTRQSQAADLLKNGGDAAAAGTGAAVLEVAAAA 61
Query: 146 WLDQGSSTGQR-GRGGHRRPKAKPPGVRS 173
G++ G+R RG RP+ P GV S
Sbjct: 62 AAQPGAAGGKRTTRGACGRPRVGPIGVLS 90
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 37.4 bits (85), Expect = 0.007
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 45 WSALCDSWQPEMFLSTPWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGITVTGACA 104
WS+ +SW+PE + P R + H +P+GR K +T +C+
Sbjct: 36 WSSKHNSWEPEENILDP-RLLLAFQKKEHEKEVQNRKRGKRPRGRPRK----LTAMSSCS 90
Query: 105 RALRMRIGGAESHSAPGSQAATPLNNSGYAEEGRLALQPWRWLDQGSSTGQRGRGGHRRP 164
R +++ A S S S +++ ++S ++E + D + G RGR H P
Sbjct: 91 RRSKLKEPDAPSKSKSSSSSSSSTSSSSSSDEEDDS-------DLDAKRGPRGRETHPVP 143
Query: 165 KAK 167
+ K
Sbjct: 144 QKK 146
>gi|82830432 sex comb on midleg-like 1 isoform a [Homo sapiens]
Length = 329
Score = 35.4 bits (80), Expect = 0.025
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 71 PRHPSTATEGS---YFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAPGSQAATP 127
P HPS +E + Y+A G ++ G+ + A ++ + +AP S +P
Sbjct: 181 PVHPSDFSEHNCQPYYAS-DGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSP 239
Query: 128 LNNSGYAEEGRLALQPWRW 146
+ N GY EEG + P W
Sbjct: 240 VENDGYIEEGSITKHPSTW 258
>gi|82830436 sex comb on midleg-like 1 isoform c [Homo sapiens]
Length = 208
Score = 35.4 bits (80), Expect = 0.025
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 71 PRHPSTATEGS---YFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAPGSQAATP 127
P HPS +E + Y+A G ++ G+ + A ++ + +AP S +P
Sbjct: 60 PVHPSDFSEHNCQPYYAS-DGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSP 118
Query: 128 LNNSGYAEEGRLALQPWRW 146
+ N GY EEG + P W
Sbjct: 119 VENDGYIEEGSITKHPSTW 137
>gi|82830430 sex comb on midleg-like 1 isoform c [Homo sapiens]
Length = 208
Score = 35.4 bits (80), Expect = 0.025
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 71 PRHPSTATEGS---YFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAPGSQAATP 127
P HPS +E + Y+A G ++ G+ + A ++ + +AP S +P
Sbjct: 60 PVHPSDFSEHNCQPYYAS-DGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSP 118
Query: 128 LNNSGYAEEGRLALQPWRW 146
+ N GY EEG + P W
Sbjct: 119 VENDGYIEEGSITKHPSTW 137
>gi|82830426 sex comb on midleg-like 1 isoform b [Homo sapiens]
Length = 302
Score = 35.4 bits (80), Expect = 0.025
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 71 PRHPSTATEGS---YFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAPGSQAATP 127
P HPS +E + Y+A G ++ G+ + A ++ + +AP S +P
Sbjct: 154 PVHPSDFSEHNCQPYYAS-DGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSP 212
Query: 128 LNNSGYAEEGRLALQPWRW 146
+ N GY EEG + P W
Sbjct: 213 VENDGYIEEGSITKHPSTW 231
>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
polypeptide 1 [Homo sapiens]
Length = 490
Score = 33.9 bits (76), Expect = 0.072
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 112 GGAESHSAPGSQAATPLNNSGYAEEGRLALQPWRWLDQG-SSTGQRGRGGHRRPKAKPPG 170
G S G Q G GR PW DQG ++TG++G G RR + +P
Sbjct: 33 GTGGSSGTSGDQGRASEGEQGLVGAGRAGGSPWSSGDQGRAATGEQGLVGSRRSRGQPLE 92
Query: 171 VRS 173
+R+
Sbjct: 93 LRA 95
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 32.7 bits (73), Expect = 0.16
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 20/119 (16%)
Query: 23 PGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPRHPSTATEGSY 82
P P +P + R + +W PE PW+G +P + T GS
Sbjct: 1353 PASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNI-DPENDPDVTPGSV 1411
Query: 83 FAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAPGSQAAT-------PLNNSGYA 134
P G TT+ ++ GG+ S P SQ AT PL+ SGY+
Sbjct: 1412 ---PTGPTINTTI------QDVNRYLLKSGGS---SPPSSQNATLPSSSAWPLSASGYS 1458
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 32.7 bits (73), Expect = 0.16
Identities = 30/114 (26%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 13 DFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPR 72
D WG +P P E P + + V S + D W P S PW G P
Sbjct: 307 DPWGGTPA--PAAGEGPTPDPWGSSDGGVPVSGPSASDPWTPAPAFSDPWGG-----SPA 359
Query: 73 HPST--ATEGSYFAKPQ--GRVSKTTVGITVTGACARALRMRIGGAESHSAPGS 122
PST T G + +P + + +G+ A L + G + S PG+
Sbjct: 360 KPSTNGTTAGGFDTEPDEFSDFDRLRTALPTSGSSAGELELLAGEVPARS-PGA 412
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 32.0 bits (71), Expect = 0.27
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 13 DFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPR 72
D WG +P P E P + + V S + D W P S PW G ++P
Sbjct: 332 DPWGGTPA--PAAGEGPTPDPWGSSDGGVPVSGPSASDPWTPAPAFSDPWGG--SPAKPS 387
Query: 73 HPSTATEGSYFAKPQ--GRVSKTTVGITVTGACARALRMRIGGAESHSAPGS 122
T G + +P + + +G+ A L + G + S PG+
Sbjct: 388 TNGTTAAGGFDTEPDEFSDFDRLRTALPTSGSSAGELELLAGEVPARS-PGA 438
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 32.0 bits (71), Expect = 0.27
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
Query: 13 DFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPR 72
D WG +P P E P + + V S + D W P S PW G ++P
Sbjct: 418 DPWGGTPA--PAAGEGPTPDPWGSSDGGVPVSGPSASDPWTPAPAFSDPWGG--SPAKPS 473
Query: 73 HPSTATEGSYFAKPQ--GRVSKTTVGITVTGACARALRMRIGGAESHSAPGS 122
T G + +P + + +G+ A L + G + S PG+
Sbjct: 474 TNGTTAAGGFDTEPDEFSDFDRLRTALPTSGSSAGELELLAGEVPARS-PGA 524
>gi|4503825 frizzled 1 [Homo sapiens]
Length = 647
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 13 DFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPR 72
+FW +P+H G G P + S AL + +L+ + G+ P
Sbjct: 245 EFWTSNPQHGGGGHRGGFPGGAGASERGKFSCPRAL----KVPSYLNYHFLGEKDCGAPC 300
Query: 73 HPSTATEGSYFAKPQGRVSKTTVGITVTGACARAL 107
P+ YF + R S+T +GI CA L
Sbjct: 301 EPTKVYGLMYFGPEELRFSRTWIGIWSVLCCASTL 335
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 31.2 bits (69), Expect = 0.47
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 79 EGSYFAKPQGRVSKTTVGITVTGAC-ARALRMRIGGAESHSAPGSQAATPLNNSGYAEEG 137
+G F KP G G C +R L + G S GS+ P G EG
Sbjct: 159 KGCPFGKP---------GSGAAGPCQSRELLGKGSGGLSQELQGSERGLP-GGGGSGREG 208
Query: 138 RLALQPWRWLDQGSSTGQRGRGGHR--RPKAKPPGVR 172
RL +Q +D GS G+ G G + K + GVR
Sbjct: 209 RLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVR 245
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 31.2 bits (69), Expect = 0.47
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 79 EGSYFAKPQGRVSKTTVGITVTGAC-ARALRMRIGGAESHSAPGSQAATPLNNSGYAEEG 137
+G F KP G G C +R L + G S GS+ P G EG
Sbjct: 159 KGCPFGKP---------GSGAAGPCQSRELLGKGSGGLSQELQGSERGLP-GGGGSGREG 208
Query: 138 RLALQPWRWLDQGSSTGQRGRGGHR--RPKAKPPGVR 172
RL +Q +D GS G+ G G + K + GVR
Sbjct: 209 RLLVQQQLGVDTGSLPGKPGGPGEKSLAQKRQNTGVR 245
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 30.4 bits (67), Expect = 0.80
Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 4 DRSLRSRGHDFWGDSPEH---RPGRPEAGMPCRFPRTSPVVSSSWSA--LCDSWQPEMFL 58
D L S H G SP+ RPG P++ CR P P + A L DS QP
Sbjct: 424 DSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAP---PPEARGIRAPPLPDSPQPLASS 480
Query: 59 STPWRGQAGASEPRHPS----TATEGSYFAKPQGRVSKTTVGITVT---GACARALRMRI 111
PW +A A P+ TA EG A P R+ V +T G +R+L
Sbjct: 481 PGPWGLEALAGGDLMPAPADPTAREG--LAAPPRRLRSRKVSCPLTRSNGDLSRSL---- 534
Query: 112 GGAESHSAPGSQAAT 126
S S GS AA+
Sbjct: 535 ----SPSPLGSSAAS 545
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 30.4 bits (67), Expect = 0.80
Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 4 DRSLRSRGHDFWGDSPEH---RPGRPEAGMPCRFPRTSPVVSSSWSA--LCDSWQPEMFL 58
D L S H G SP+ RPG P++ CR P P + A L DS QP
Sbjct: 474 DSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAP---PPEARGIRAPPLPDSPQPLASS 530
Query: 59 STPWRGQAGASEPRHPS----TATEGSYFAKPQGRVSKTTVGITVT---GACARALRMRI 111
PW +A A P+ TA EG A P R+ V +T G +R+L
Sbjct: 531 PGPWGLEALAGGDLMPAPADPTAREG--LAAPPRRLRSRKVSCPLTRSNGDLSRSL---- 584
Query: 112 GGAESHSAPGSQAAT 126
S S GS AA+
Sbjct: 585 ----SPSPLGSSAAS 595
>gi|29789054 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 30.4 bits (67), Expect = 0.80
Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 4 DRSLRSRGHDFWGDSPEH---RPGRPEAGMPCRFPRTSPVVSSSWSA--LCDSWQPEMFL 58
D L S H G SP+ RPG P++ CR P P + A L DS QP
Sbjct: 474 DSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAP---PPEARGIRAPPLPDSPQPLASS 530
Query: 59 STPWRGQAGASEPRHPS----TATEGSYFAKPQGRVSKTTVGITVT---GACARALRMRI 111
PW +A A P+ TA EG A P R+ V +T G +R+L
Sbjct: 531 PGPWGLEALAGGDLMPAPADPTAREG--LAAPPRRLRSRKVSCPLTRSNGDLSRSL---- 584
Query: 112 GGAESHSAPGSQAAT 126
S S GS AA+
Sbjct: 585 ----SPSPLGSSAAS 595
>gi|239049440 FCH domain only 1 isoform a [Homo sapiens]
Length = 891
Score = 30.4 bits (67), Expect = 0.80
Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 4 DRSLRSRGHDFWGDSPEH---RPGRPEAGMPCRFPRTSPVVSSSWSA--LCDSWQPEMFL 58
D L S H G SP+ RPG P++ CR P P + A L DS QP
Sbjct: 474 DSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAP---PPEARGIRAPPLPDSPQPLASS 530
Query: 59 STPWRGQAGASEPRHPS----TATEGSYFAKPQGRVSKTTVGITVT---GACARALRMRI 111
PW +A A P+ TA EG A P R+ V +T G +R+L
Sbjct: 531 PGPWGLEALAGGDLMPAPADPTAREG--LAAPPRRLRSRKVSCPLTRSNGDLSRSL---- 584
Query: 112 GGAESHSAPGSQAAT 126
S S GS AA+
Sbjct: 585 ----SPSPLGSSAAS 595
>gi|19923812 oxysterol-binding protein-like protein 10 [Homo
sapiens]
Length = 764
Score = 30.4 bits (67), Expect = 0.80
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 91 SKTTVGITVTGACARALRMRIGGAESHSAPGSQAATPLNNSGYAEEGRL 139
S + + G +R+ +GG S S+PGS AA+P G E L
Sbjct: 29 SSPSCSLAGRGVSSRSAAAGLGGGGSRSSPGSVAASPSGGGGRRREPAL 77
>gi|126091130 Gab3 protein isoform 1 [Homo sapiens]
Length = 587
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 6 SLRSRGHDFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQ 65
++R+ D G S HR R +PCRF SP+ ++ +++ DS+ P Q
Sbjct: 351 NMRTWKADVEGQSLRHRDKRLSLNLPCRF---SPMYPTASASIEDSY-------VPMSPQ 400
Query: 66 AGAS 69
AGAS
Sbjct: 401 AGAS 404
>gi|18079323 Gab3 protein isoform 2 [Homo sapiens]
Length = 586
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 6 SLRSRGHDFWGDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQ 65
++R+ D G S HR R +PCRF SP+ ++ +++ DS+ P Q
Sbjct: 350 NMRTWKADVEGQSLRHRDKRLSLNLPCRF---SPMYPTASASIEDSY-------VPMSPQ 399
Query: 66 AGAS 69
AGAS
Sbjct: 400 AGAS 403
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 29.3 bits (64), Expect = 1.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 101 GACARALRMRIGGAESHSAPGSQAATPLNNSGYAEEGRLALQPWRWLDQGSSTGQRGRGG 160
G+CA+ R+ G + A G+ L++ + + G S G+RGR
Sbjct: 427 GSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGR-- 484
Query: 161 HRRPKAKPPG 170
++PKA P G
Sbjct: 485 -QKPKAAPEG 493
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 29.3 bits (64), Expect = 1.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 101 GACARALRMRIGGAESHSAPGSQAATPLNNSGYAEEGRLALQPWRWLDQGSSTGQRGRGG 160
G+CA+ R+ G + A G+ L++ + + G S G+RGR
Sbjct: 427 GSCAQGGRVAPGQRPAQGATGTDLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGR-- 484
Query: 161 HRRPKAKPPG 170
++PKA P G
Sbjct: 485 -QKPKAAPEG 493
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 29.3 bits (64), Expect = 1.8
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 39 PVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPRHPSTATEGSYFAKPQGRVSKTTVGIT 98
P SSSWSA+ + S W AS R + A G TT G
Sbjct: 9 PSESSSWSAVAGGLGAQPAQSGSWPAAGAASSRRMKYSLPSDGLCALSTG----TTPGGA 64
Query: 99 VTGA---CARALRMRIGGAESHSAP 120
+GA C RA+R + A SAP
Sbjct: 65 PSGAHSSCRRAVRPGLSVAGKASAP 89
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 29.3 bits (64), Expect = 1.8
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 27/145 (18%)
Query: 26 PEAGMPCRFPRTSPVVSSSWSALCDSWQPE--MFLSTPWRGQAGASEPRHPSTATEGSYF 83
PE + + ++S+S S + D PE + S P Q A PR
Sbjct: 116 PEITVSNMLGQDGTLLSNSISVMPDIRNPEGTQYSSHP---QMAAMRPRGQPADIRQQPG 172
Query: 84 AKPQGRVSKTTVGITVTGACARALRMRIGGAE----SHSAPGSQAATPLNNSGYAEEGRL 139
P G++ TT+ + A L + +GG+ S S PGS++ATP +S E
Sbjct: 173 MMPHGQL--TTINQSQLSA---QLGLNMGGSNVPHNSPSPPGSKSATPSPSSSVHE---- 223
Query: 140 ALQPWRWLDQGSSTGQRGRGGHRRP 164
D+G T + GG +RP
Sbjct: 224 --------DEGDDT-SKINGGEKRP 239
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 29.3 bits (64), Expect = 1.8
Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 24/162 (14%)
Query: 16 GDSPEHRPGRPEAGMPCRFPRTSPVVSSSWSALCDSWQPEMFLSTPWRGQAGASEPRHPS 75
G+ P H M P T P S S S S P +GQ
Sbjct: 124 GNGPSH------VSMQQTAPNTLPTTSMSISGPGYSHAGPASQGVPMQGQG--------- 168
Query: 76 TATEGSYFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAPGSQAATPLNNSGYAE 135
T G+Y ++ + V + A GG++ + S A + G +
Sbjct: 169 --TIGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIAMMGQGSQGSSM 226
Query: 136 EGRLALQPWRWLDQGSSTGQRGRG-------GHRRPKAKPPG 170
G+ + P+R QGSS G+ H + A+P G
Sbjct: 227 MGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMG 268
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 28.9 bits (63), Expect = 2.3
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 13/128 (10%)
Query: 19 PEHRPGRPEAGMPCRFPRTSPVVSSSWSALCD--SWQPEMFLSTPWR----GQAGASEPR 72
P+HRPG P A P P SS + AL +W+ P+R Q GA P
Sbjct: 355 PQHRPGDPAASTST--PEPDPADSSDFLALAGLRAWREHGVRPLPYRHPESQQEGAVAPW 412
Query: 73 HPSTATEGS-YFAKPQGRVSKTTVGITVTGACARALRMRIGGAESHSAP-GSQAATPLNN 130
P E + A+P+ S ++ +G ++ L + H P S +++P +
Sbjct: 413 GPRRVPEEQVHQAEPKTPSSPPSLASEPSGTSSQHL---VPSPPKHPRPRDSGSSSPRWS 469
Query: 131 SGYAEEGR 138
+ GR
Sbjct: 470 TDLQSRGR 477
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,532,869
Number of Sequences: 37866
Number of extensions: 407894
Number of successful extensions: 1212
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 110
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.