Guide to the Human Genome
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Name: FZD1 Sequence: fasta or formatted (647aa) NCBI GI: 4503825
Description:

frizzled 1

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         55           2
 C cysteine            3.6         23           2
 D aspartate           2.8         18           1
 E glutamate           5.1         33           3
 F phenylalanine       5.6         36           2
 G glycine            10.0         65           4
 H histidine           1.9         12           1
 I isoleucine          4.3         28           2
 K lysine              4.0         26           2
 L leucine            10.2         66           5
 M methionine          2.3         15           2
 N asparagine          2.2         14           2
 P proline             7.0         45           5
 Q glutamine           4.6         30           4
 R arginine            4.8         31           3
 S serine              5.9         38           2
 T threonine           5.4         35           2
 V valine              6.0         39           2
 W tryptophan          2.5         16           2
 Y tyrosine            3.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   frizzled 1 
FZD7                  0.674   frizzled 7 
FZD2                  0.674   frizzled 2 
FZD5                  0.373   frizzled 5 precursor 
FZD8                  0.364   frizzled 8 
FZD10                 0.356   frizzled 10 
FZD3                  0.344   frizzled 3 
FZD6                  0.329   frizzled 6 
FZD9                  0.318   frizzled 9 
FZD4                  0.317   frizzled 4 
SMO                   0.127   smoothened 
FRZB                  0.075   frizzled-related protein 
SFRP4                 0.072   secreted frizzled-related  protein 4 
SFRP2                 0.060   secreted frizzled-related protein 2 precursor 
SFRP5                 0.059   secreted frizzled-related protein 5 
SFRP1                 0.059   secreted frizzled-related protein 1 
CORIN                 0.054   corin 
MFRP                  0.038   membrane frizzled-related protein 
CPZ                   0.029   carboxypeptidase Z isoform 1 
CPZ                   0.029   carboxypeptidase Z isoform 2 precursor 
COL18A1               0.017   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
LOC100290189          0.014   PREDICTED: hypothetical protein XP_002347700 
LOC100289086          0.014   PREDICTED: hypothetical protein XP_002344149 
LMTK3                 0.009   lemur tyrosine kinase 3 
C6orf174              0.009   hypothetical protein LOC387104 
FNTA                  0.009   farnesyltransferase, CAAX box, alpha isoform c [Homo...
FNTA                  0.009   farnesyltransferase, CAAX box, alpha isoform a 
KIAA1602              0.009   hypothetical protein LOC57701 
TAF4                  0.008   TBP-associated factor 4 
SMARCA4               0.008   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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