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Search of human proteins with 169209448
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209448 PREDICTED: hypothetical protein [Homo sapiens]
(260 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209448 PREDICTED: hypothetical protein [Homo sapiens] 531 e-151
gi|169210084 PREDICTED: hypothetical protein [Homo sapiens] 530 e-151
gi|169210523 PREDICTED: hypothetical protein [Homo sapiens] 529 e-150
gi|27436893 tapasin isoform 1 precursor [Homo sapiens] 34 0.15
gi|27436897 tapasin isoform 3 precursor [Homo sapiens] 34 0.15
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ... 31 0.95
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 30 2.1
gi|116325985 transcript expressed during hematopoiesis 2 [Homo s... 29 4.7
gi|4885377 histone cluster 1, H1d [Homo sapiens] 29 4.7
gi|38194229 kelch-like 17 [Homo sapiens] 29 4.7
gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [... 28 6.1
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term... 28 6.1
gi|41281996 HEAT repeat containing 3 [Homo sapiens] 28 6.1
gi|21389443 transmembrane protein 125 [Homo sapiens] 28 6.1
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ... 28 8.0
gi|32964823 antimicrobial peptide RYA3 [Homo sapiens] 28 8.0
>gi|169209448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 531 bits (1369), Expect = e-151
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP 60
MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP
Sbjct: 1 MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP 60
Query: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG 120
GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG
Sbjct: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG 120
Query: 121 VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG 180
VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG
Sbjct: 121 VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG 180
Query: 181 AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS 240
AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS
Sbjct: 181 AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS 240
Query: 241 KVQPPAALCHIGPDALTVKA 260
KVQPPAALCHIGPDALTVKA
Sbjct: 241 KVQPPAALCHIGPDALTVKA 260
>gi|169210084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 530 bits (1365), Expect = e-151
Identities = 259/260 (99%), Positives = 260/260 (100%)
Query: 1 MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP 60
MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP
Sbjct: 1 MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP 60
Query: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG 120
GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG
Sbjct: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG 120
Query: 121 VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG 180
VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG
Sbjct: 121 VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG 180
Query: 181 AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS 240
AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS
Sbjct: 181 AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS 240
Query: 241 KVQPPAALCHIGPDALTVKA 260
+VQPPAALCHIGPDALTVKA
Sbjct: 241 EVQPPAALCHIGPDALTVKA 260
>gi|169210523 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 529 bits (1362), Expect = e-150
Identities = 259/260 (99%), Positives = 259/260 (99%)
Query: 1 MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATDIGCRRRRSHRRRRRP 60
MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFG RGGPAGATDIGCRRRRSHRRRRRP
Sbjct: 1 MHVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGGRGGPAGATDIGCRRRRSHRRRRRP 60
Query: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG 120
GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG
Sbjct: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPG 120
Query: 121 VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG 180
VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG
Sbjct: 121 VGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGG 180
Query: 181 AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS 240
AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS
Sbjct: 181 AQDRVAFGALHATPRGALPNPKLAEGASVLVMGNEAPIVTLCAFIWFWCCGIVFIGTFVS 240
Query: 241 KVQPPAALCHIGPDALTVKA 260
KVQPPAALCHIGPDALTVKA
Sbjct: 241 KVQPPAALCHIGPDALTVKA 260
>gi|27436893 tapasin isoform 1 precursor [Homo sapiens]
Length = 448
Score = 33.9 bits (76), Expect = 0.15
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 12 EVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATD-IGCRRRRSHRRRRRPGSV--AEDLL 68
E P + +++H P GG + RGGP G + +R S R GSV + L
Sbjct: 308 EAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQ 367
Query: 69 PPSILQVLHVVEMLVRLHMNTEVAFGSCGVVT 100
PP + H R+H + A G VT
Sbjct: 368 PPPVTTEQHGARYACRIHHPSLPASGRSAEVT 399
>gi|27436897 tapasin isoform 3 precursor [Homo sapiens]
Length = 412
Score = 33.9 bits (76), Expect = 0.15
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 12 EVPGHVGLIITHLAPPGGFGFWFGRRGGPAGATD-IGCRRRRSHRRRRRPGSV--AEDLL 68
E P + +++H P GG + RGGP G + +R S R GSV + L
Sbjct: 308 EAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQ 367
Query: 69 PPSILQVLHVVEMLVRLHMNTEVAFGSCGVVT 100
PP + H R+H + A G VT
Sbjct: 368 PPPVTTEQHGARYACRIHHPSLPASGRSAEVT 399
>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor
[Homo sapiens]
Length = 1419
Score = 31.2 bits (69), Expect = 0.95
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 41 AGATDIGCRRRRSHRRRRRP 60
AG TD GCRRRR R + RP
Sbjct: 271 AGLTDNGCRRRRQDRTKERP 290
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 30.0 bits (66), Expect = 2.1
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 33/136 (24%)
Query: 35 GRRGGPAGATDIGCRRRRSHRRRRR------------------PGSVAEDLLPP----SI 72
GR G GA + G RR+ + RR PG+ A LP +
Sbjct: 223 GRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQHGAP 282
Query: 73 LQVLHVVEMLVRL---------HMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPGVGL 123
L V HV + R H T A G + L L R +C P L
Sbjct: 283 LDVAHVPDSGPRAASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTCPP--PL 340
Query: 124 PAFAVDTGAPRLRVLL 139
PA ++ GA R R+ L
Sbjct: 341 PAASLAAGAERARLNL 356
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 30.0 bits (66), Expect = 2.1
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 33/136 (24%)
Query: 35 GRRGGPAGATDIGCRRRRSHRRRRR------------------PGSVAEDLLPP----SI 72
GR G GA + G RR+ + RR PG+ A LP +
Sbjct: 223 GRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQHGAP 282
Query: 73 LQVLHVVEMLVRL---------HMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPGVGL 123
L V HV + R H T A G + L L R +C P L
Sbjct: 283 LDVAHVPDSGPRAASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTCPP--PL 340
Query: 124 PAFAVDTGAPRLRVLL 139
PA ++ GA R R+ L
Sbjct: 341 PAASLAAGAERARLNL 356
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 30.0 bits (66), Expect = 2.1
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 33/136 (24%)
Query: 35 GRRGGPAGATDIGCRRRRSHRRRRR------------------PGSVAEDLLPP----SI 72
GR G GA + G RR+ + RR PG+ A LP +
Sbjct: 223 GRESGSTGAINQGRRRKDAARRLPNRNLLRDLSLPRGAQSSPLPGARASSFLPAPQHGAP 282
Query: 73 LQVLHVVEMLVRL---------HMNTEVAFGSCGVVTHLAAERLVTTRVALASCQPGVGL 123
L V HV + R H T A G + L L R +C P L
Sbjct: 283 LDVAHVPDSGPRAASAPARTPGHARTRAAAGPAAYLRGLMVASLAWVRRHAHTCPP--PL 340
Query: 124 PAFAVDTGAPRLRVLL 139
PA ++ GA R R+ L
Sbjct: 341 PAASLAAGAERARLNL 356
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 30.0 bits (66), Expect = 2.1
Identities = 22/40 (55%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 38 GGPAGATD-IGCRRRRSHRRRRR---PGSVAEDLLPPSIL 73
G P GA D I CR RSH RRR+ PGSV PPS L
Sbjct: 1037 GFPGGADDRILCRVGRSHSRRRQGLAPGSVL--CFPPSSL 1074
>gi|116325985 transcript expressed during hematopoiesis 2 [Homo
sapiens]
Length = 113
Score = 28.9 bits (63), Expect = 4.7
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 40 PAGATDIGCRRRRSHRRRRRPGSV-AEDLLPPSILQVLHVVEMLVRL-HMNTEVAFGSCG 97
P GA + GC R H RRRR +V ++L +V + +V L H A+ G
Sbjct: 9 PLGALEQGCPIRVEHDRRRRQFTVRLNGCHDRAVLLYEYVGKRIVDLQHTEVPDAYRGRG 68
Query: 98 VVTHLAAERL 107
+ HLA L
Sbjct: 69 IAKHLAKAAL 78
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 28.9 bits (63), Expect = 4.7
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 98 VVTHLAAERLVTTRVALASCQPGVGLPAFAVDTGAPRLRVLLLHVCLQGLLVLIVPVALG 157
++T A + V+LA+ + + + V+ R+++ L + +G LV
Sbjct: 44 LITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGAS 103
Query: 158 ALECLTRVTRMHHGHVAAQRAGGAQDRVAFGALHATPRGALPNPKLAEGAS 208
L + G A++AG A+ R P GA PK GA+
Sbjct: 104 GSFKLNKKAASGEGKPKAKKAGAAKPR--------KPAGAAKKPKKVAGAA 146
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 28.9 bits (63), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 96 CGVVTHLAAERLVTTRVALASCQP 119
C +V H+AA+ + +V LASC P
Sbjct: 92 CDIVLHVAAKEIRAHKVVLASCSP 115
>gi|55770854 N-methyl-D-aspartate receptor subunit 2C precursor [Homo
sapiens]
Length = 1233
Score = 28.5 bits (62), Expect = 6.1
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 2 HVLLTGHVNAEVPGHVGLIITHLAPPGGFGFWFGRRGGPAG 42
HV L H +A +P G + HL P G W GP G
Sbjct: 1148 HVCL--HAHAHLPFCWGAVCPHLPPCASHGSWLSGAWGPLG 1186
>gi|122937480 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 10 [Homo sapiens]
Length = 615
Score = 28.5 bits (62), Expect = 6.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 47 GCRRRRSHRRRRRPGSVAE 65
GCRRRR RR RR GS +
Sbjct: 147 GCRRRRRQRRSRRLGSAGD 165
>gi|41281996 HEAT repeat containing 3 [Homo sapiens]
Length = 680
Score = 28.5 bits (62), Expect = 6.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 53 SHRRRRRPGSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAFGSC 96
SH+RR R + DLLPP+ ++ + +L E+ C
Sbjct: 331 SHKRRVRRKTFVSDLLPPTDKELRETIALLTAQQTALEIIVNMC 374
>gi|21389443 transmembrane protein 125 [Homo sapiens]
Length = 219
Score = 28.5 bits (62), Expect = 6.1
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 142 VCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGGAQD 183
+CL LLVL+ + A++ + + + H HVA R+GG D
Sbjct: 74 LCLLALLVLVKQLMSSAVQDMNCIRQAH--HVALLRSGGGAD 113
>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
sapiens]
Length = 80
Score = 28.1 bits (61), Expect = 8.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 6 TGHVNAEVPGHVGLIITHLAPPGGFGFW 33
TGH + +P GL L PGG FW
Sbjct: 36 TGHADGNIPAGPGLCSPQLLLPGGQLFW 63
>gi|32964823 antimicrobial peptide RYA3 [Homo sapiens]
Length = 476
Score = 28.1 bits (61), Expect = 8.0
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 61 GSVAEDLLPPSILQVLHVVEMLVRLHMNTEVAF---GSCGVVTHLAAERLVTTRVALASC 117
G E+L P +L L + V+L ++T+V G G + LAAE VT+RVALA
Sbjct: 94 GLKIEELTLPKVLLKL-LPGFGVQLSLHTKVGMHCSGPLGGLLQLAAEVNVTSRVALAVS 152
Query: 118 QPGVGLPAFAVDTGAPRLRVLLLHVCL-QGLL 148
G + R LL H+ L GLL
Sbjct: 153 SRGTPILIL------KRCSTLLGHISLFSGLL 178
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.142 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,284,553
Number of Sequences: 37866
Number of extensions: 517649
Number of successful extensions: 1644
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1635
Number of HSP's gapped (non-prelim): 20
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.