SMG6 1567

Name: SMG6	Sequence: fasta or formatted (1419aa)		NCBI GI: 115511020
Description: Smg-6 homolog, nonsense mediated mRNA decay factor		Referenced in: RNases and RNA Stability Telomere Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 89 3 C cysteine 1.4 20 2 D aspartate 6.6 94 3 E glutamate 8.7 124 4 F phenylalanine 2.5 36 2 G glycine 6.5 92 3 H histidine 1.4 20 1 I isoleucine 3.6 51 2 K lysine 6.7 95 2 L leucine 10.2 145 2 M methionine 1.8 25 1 N asparagine 3.9 55 2 P proline 6.0 85 3 Q glutamine 5.2 74 3 R arginine 8.4 119 4 S serine 7.9 112 2 T threonine 4.1 58 2 V valine 5.1 72 2 W tryptophan 0.9 13 1 Y tyrosine 2.8 40 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Smg-6 homolog, nonsense mediated mRNA decay factor ... SMG7 0.027 SMG-7 homolog isoform 1 SMG7 0.027 SMG-7 homolog isoform 2 SMG7 0.024 SMG-7 homolog isoform 4 SMG5 0.018 SMG5 homolog nonsense mediated mRNA decay factor [H... C1orf26 0.012 hypothetical protein LOC54823 C1orf26 0.012 hypothetical protein LOC54823 PPIG 0.011 peptidylprolyl isomerase G HDGF2 0.010 hepatoma-derived growth factor-related protein 2 iso... HDGF2 0.010 hepatoma-derived growth factor-related protein 2 iso... PRPF38B 0.009 PRP38 pre-mRNA processing factor 38 (yeast) domain ... THOC2 0.009 THO complex 2 LOC100286959 0.009 PREDICTED: hypothetical protein XP_002343921 SUPT5H 0.009 suppressor of Ty 5 homolog isoform b SUPT5H 0.009 suppressor of Ty 5 homolog isoform a SUPT5H 0.009 suppressor of Ty 5 homolog isoform a SUPT5H 0.009 suppressor of Ty 5 homolog isoform a RPGR 0.008 retinitis pigmentosa GTPase regulator isoform C [Hom... RBM25 0.008 RNA binding motif protein 25 SFRS4 0.008 splicing factor, arginine/serine-rich 4 EPB41L2 0.008 erythrocyte membrane protein band 4.1-like 2 isofor... EPB41L2 0.008 erythrocyte membrane protein band 4.1-like 2 isofor... EPB41L2 0.008 erythrocyte membrane protein band 4.1-like 2 isoform ... LOC100133599 0.007 PREDICTED: hypothetical protein SFRS12 0.007 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.007 splicing factor, arginine/serine-rich 12 isoform b [... ZNF469 0.007 zinc finger protein 469 CALD1 0.007 caldesmon 1 isoform 5 MPHOSPH8 0.007 M-phase phosphoprotein 8 ARID4B 0.007 AT rich interactive domain 4B isoform 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.