Guide to the Human Genome
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Name: LOC100129509 Sequence: fasta or formatted (441aa) NCBI GI: 169205546
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {498aa} PREDICTED: hypothetical protein
alt prot {498aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         36           2
 C cysteine            1.1          5           1
 D aspartate           1.6          7           1
 E glutamate           5.9         26           2
 F phenylalanine       2.0          9           1
 G glycine            10.2         45           2
 H histidine           3.2         14           1
 I isoleucine          1.6          7           1
 K lysine              2.9         13           1
 L leucine            14.7         65           3
 M methionine          0.9          4           1
 N asparagine          0.9          4           1
 P proline             9.5         42           2
 Q glutamine           6.1         27           2
 R arginine            7.0         31           1
 S serine              7.9         35           3
 T threonine           5.4         24           1
 V valine              6.8         30           3
 W tryptophan          2.9         13           2
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129509          0.941   PREDICTED: hypothetical protein 
LOC100129509          0.941   PREDICTED: hypothetical protein 
LOC100129218          0.064   PREDICTED: hypothetical protein 
LOC100129218          0.064   PREDICTED: hypothetical protein 
LOC100129218          0.064   PREDICTED: hypothetical protein 
LOC100291384          0.017   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.017   PREDICTED: hypothetical protein XP_002343004 
LOC100291560          0.015   PREDICTED: hypothetical protein XP_002345645 
LOC100289976          0.015   PREDICTED: hypothetical protein XP_002346488 
LOC100288941          0.015   PREDICTED: hypothetical protein XP_002342332 
HEG1                  0.011   HEG homolog 1 
FAM22G                0.011   hypothetical protein LOC441457 
RREB1                 0.010   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.010   ras responsive element binding protein 1 isoform 1 [...
ZSWIM5                0.010   zinc finger, SWIM domain containing 5 
LOC100291290          0.009   PREDICTED: hypothetical protein XP_002347363 
LOC100288147          0.009   PREDICTED: hypothetical protein XP_002343226 
C2orf55               0.009   hypothetical protein LOC343990 
TTN                   0.009   titin isoform N2-A 
MYO15A                0.009   myosin XV 
LOC729417             0.009   PREDICTED: hypothetical protein 
LOC729417             0.009   PREDICTED: hypothetical protein 
LOC729417             0.009   PREDICTED: hypothetical protein 
PLB1                  0.009   phospholipase B1 
C19orf45              0.008   hypothetical protein LOC374877 
RUFY4                 0.008   RUN and FYVE domain containing 4 
C1orf172              0.008   hypothetical protein LOC126695 
ADAM33                0.008   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.008   ADAM metallopeptidase domain 33 isoform beta preprop...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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