Search of human proteins with 169180155

Search of human proteins with 169180155

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169180155 PREDICTED: similar to microtubule-associated
proteins 1A/1B light chain 3 [Homo sapiens]
         (377 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169179756 PREDICTED: similar to microtubule-associated protei...   770   0.0  
gi|169180155 PREDICTED: similar to microtubule-associated protei...   770   0.0  
gi|169183885 PREDICTED: similar to microtubule-associated protei...   249   2e-66
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ...   214   1e-55
gi|148277548 microtubule-associated protein 1 light chain 3 beta...   210   1e-54
gi|14210522 microtubule-associated protein 1 light chain 3 alpha...   176   3e-44
gi|31563518 microtubule-associated protein 1 light chain 3 alpha...   162   4e-40
gi|239755918 PREDICTED: similar to microtubule-associated protei...   141   1e-33
gi|239750436 PREDICTED: similar to microtubule-associated protei...   141   1e-33
gi|239744738 PREDICTED: similar to microtubule-associated protei...   141   1e-33
gi|51972260 microtubule-associated protein 1 light chain 3 gamma...   114   1e-25
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi...    78   1e-14
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap...    63   4e-10
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]          62   8e-10
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]          33   0.32 
gi|12383066 axotrophin [Homo sapiens]                                  30   2.7  
gi|153791466 AMIGO protein [Homo sapiens]                              30   3.6  
gi|148539890 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl...    30   4.6  
gi|148539888 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl...    30   4.6  
gi|194239709 dedicator of cytokinesis 9 isoform d [Homo sapiens]       29   6.1  
gi|194239707 dedicator of cytokinesis 9 isoform c [Homo sapiens]       29   6.1  
gi|194239705 dedicator of cytokinesis 9 isoform b [Homo sapiens]       29   6.1  
gi|24308029 dedicator of cytokinesis 9 isoform a [Homo sapiens]        29   6.1  
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6...    29   6.1  
gi|110611228 utrophin [Homo sapiens]                                   29   7.9  

>gi|169179756 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 377

 Score =  770 bits (1989), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MEKTDNSVCHLVNVVGICALAIQHAHRRETQPKELFNRSQNRAKHILHKDASVSSCGGDF 60
           MEKTDNSVCHLVNVVGICALAIQHAHRRETQPKELFNRSQNRAKHILHKDASVSSCGGDF
Sbjct: 1   MEKTDNSVCHLVNVVGICALAIQHAHRRETQPKELFNRSQNRAKHILHKDASVSSCGGDF 60

Query: 61  KGGGSGEWKRQNFHDSFSSNVLGYCDPTYPPLLQSTGQETRPLTQAATLTQASCLSPDSW 120
           KGGGSGEWKRQNFHDSFSSNVLGYCDPTYPPLLQSTGQETRPLTQAATLTQASCLSPDSW
Sbjct: 61  KGGGSGEWKRQNFHDSFSSNVLGYCDPTYPPLLQSTGQETRPLTQAATLTQASCLSPDSW 120

Query: 121 GRVAERPNLGQGKFLVQLVGDMGEEANFSLHRSLQVCPQTCQLVWPPSFWWAAGPLVTPS 180
           GRVAERPNLGQGKFLVQLVGDMGEEANFSLHRSLQVCPQTCQLVWPPSFWWAAGPLVTPS
Sbjct: 121 GRVAERPNLGQGKFLVQLVGDMGEEANFSLHRSLQVCPQTCQLVWPPSFWWAAGPLVTPS 180

Query: 181 DQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSLPVRYQFGRR 240
           DQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSLPVRYQFGRR
Sbjct: 181 DQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSLPVRYQFGRR 240

Query: 241 IPIQEAFLTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKT 300
           IPIQEAFLTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKT
Sbjct: 241 IPIQEAFLTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKT 300

Query: 301 KFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGF 360
           KFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGF
Sbjct: 301 KFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGF 360

Query: 361 LYMVYASQETYGMKLSV 377
           LYMVYASQETYGMKLSV
Sbjct: 361 LYMVYASQETYGMKLSV 377


>gi|169180155 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 377

 Score =  770 bits (1989), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MEKTDNSVCHLVNVVGICALAIQHAHRRETQPKELFNRSQNRAKHILHKDASVSSCGGDF 60
           MEKTDNSVCHLVNVVGICALAIQHAHRRETQPKELFNRSQNRAKHILHKDASVSSCGGDF
Sbjct: 1   MEKTDNSVCHLVNVVGICALAIQHAHRRETQPKELFNRSQNRAKHILHKDASVSSCGGDF 60

Query: 61  KGGGSGEWKRQNFHDSFSSNVLGYCDPTYPPLLQSTGQETRPLTQAATLTQASCLSPDSW 120
           KGGGSGEWKRQNFHDSFSSNVLGYCDPTYPPLLQSTGQETRPLTQAATLTQASCLSPDSW
Sbjct: 61  KGGGSGEWKRQNFHDSFSSNVLGYCDPTYPPLLQSTGQETRPLTQAATLTQASCLSPDSW 120

Query: 121 GRVAERPNLGQGKFLVQLVGDMGEEANFSLHRSLQVCPQTCQLVWPPSFWWAAGPLVTPS 180
           GRVAERPNLGQGKFLVQLVGDMGEEANFSLHRSLQVCPQTCQLVWPPSFWWAAGPLVTPS
Sbjct: 121 GRVAERPNLGQGKFLVQLVGDMGEEANFSLHRSLQVCPQTCQLVWPPSFWWAAGPLVTPS 180

Query: 181 DQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSLPVRYQFGRR 240
           DQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSLPVRYQFGRR
Sbjct: 181 DQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSLPVRYQFGRR 240

Query: 241 IPIQEAFLTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKT 300
           IPIQEAFLTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKT
Sbjct: 241 IPIQEAFLTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKT 300

Query: 301 KFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGF 360
           KFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGF
Sbjct: 301 KFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGF 360

Query: 361 LYMVYASQETYGMKLSV 377
           LYMVYASQETYGMKLSV
Sbjct: 361 LYMVYASQETYGMKLSV 377


>gi|169183885 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 157

 Score =  249 bits (637), Expect = 2e-66
 Identities = 127/128 (99%), Positives = 127/128 (99%)

Query: 250 RARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRD 309
           R RPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRD
Sbjct: 30  RTRPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRD 89

Query: 310 VNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQE 369
           VNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQE
Sbjct: 90  VNMSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQE 149

Query: 370 TYGMKLSV 377
           TYGMKLSV
Sbjct: 150 TYGMKLSV 157


>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
           [Homo sapiens]
          Length = 125

 Score =  214 bits (544), Expect = 1e-55
 Identities = 111/126 (88%), Positives = 118/126 (93%), Gaps = 3/126 (2%)

Query: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
           P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD   VN
Sbjct: 2   PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59

Query: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
           MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMVYASQET+
Sbjct: 60  MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119

Query: 372 GMKLSV 377
           GMKLSV
Sbjct: 120 GMKLSV 125


>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
           [Homo sapiens]
          Length = 125

 Score =  210 bits (535), Expect = 1e-54
 Identities = 110/126 (87%), Positives = 117/126 (92%), Gaps = 3/126 (2%)

Query: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
           P+EKTFKQRRTF+QRV DVRLI+EQHP K PVI ERY+GEKQLPVLDKTKFLVPD   VN
Sbjct: 2   PSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59

Query: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
           MSELIKIIRRRLQLNANQAF L+VNGHSMVSVSTP+SEVYESEKDEDGFLYMV ASQET+
Sbjct: 60  MSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETF 119

Query: 372 GMKLSV 377
           GMKLSV
Sbjct: 120 GMKLSV 125


>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
           isoform a [Homo sapiens]
          Length = 121

 Score =  176 bits (446), Expect = 3e-44
 Identities = 88/121 (72%), Positives = 105/121 (86%), Gaps = 3/121 (2%)

Query: 253 PAEKTFKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
           P+++ FKQRR+F  R  +V+ I++QHP+K PVI ERY+GEKQLPVLDKTKFLVPD   VN
Sbjct: 2   PSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD--HVN 59

Query: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
           MSEL+KIIRRRLQLN  QAF L+VN HSMVSVSTP++++YE EKDEDGFLYMVYASQET+
Sbjct: 60  MSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETF 119

Query: 372 G 372
           G
Sbjct: 120 G 120


>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
           isoform b [Homo sapiens]
          Length = 125

 Score =  162 bits (411), Expect = 4e-40
 Identities = 80/104 (76%), Positives = 93/104 (89%), Gaps = 2/104 (1%)

Query: 269 DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELIKIIRRRLQLNAN 328
           +V+ I++QHP+K PVI ERY+GEKQLPVLDKTKFLVPD   VNMSEL+KIIRRRLQLN  
Sbjct: 23  EVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD--HVNMSELVKIIRRRLQLNPT 80

Query: 329 QAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
           QAF L+VN HSMVSVSTP++++YE EKDEDGFLYMVYASQET+G
Sbjct: 81  QAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 124


>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
           light chain 3 beta [Homo sapiens]
          Length = 105

 Score =  141 bits (355), Expect = 1e-33
 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)

Query: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313
           +EKTFKQ  TF+                     RYQGEK+LPVLDKTKFLVPD   VNMS
Sbjct: 3   SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39

Query: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373
           EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G 
Sbjct: 40  ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99

Query: 374 KLSV 377
           KLSV
Sbjct: 100 KLSV 103


>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
           light chain 3 beta [Homo sapiens]
          Length = 105

 Score =  141 bits (355), Expect = 1e-33
 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)

Query: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313
           +EKTFKQ  TF+                     RYQGEK+LPVLDKTKFLVPD   VNMS
Sbjct: 3   SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39

Query: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373
           EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G 
Sbjct: 40  ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99

Query: 374 KLSV 377
           KLSV
Sbjct: 100 KLSV 103


>gi|239744738 PREDICTED: similar to microtubule-associated proteins
           1A/1B light chain 3 [Homo sapiens]
          Length = 105

 Score =  141 bits (355), Expect = 1e-33
 Identities = 81/124 (65%), Positives = 88/124 (70%), Gaps = 23/124 (18%)

Query: 254 AEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMS 313
           +EKTFKQ  TF+                     RYQGEK+LPVLDKTKFLVPD   VNMS
Sbjct: 3   SEKTFKQCCTFK---------------------RYQGEKELPVLDKTKFLVPD--HVNMS 39

Query: 314 ELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373
           EL KII+R L+LNANQAF L+VNG S VSVSTP SEVYE EKDEDGFLY VYASQE +G 
Sbjct: 40  ELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPTSEVYEGEKDEDGFLYTVYASQEMFGR 99

Query: 374 KLSV 377
           KLSV
Sbjct: 100 KLSV 103


>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
           [Homo sapiens]
          Length = 147

 Score =  114 bits (285), Expect = 1e-25
 Identities = 60/121 (49%), Positives = 84/121 (69%), Gaps = 3/121 (2%)

Query: 253 PAEKTFKQRRTFQQRVD-VRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVN 311
           P+ + FKQR++   R + V  I+ + P K PV+ ERY  E  LP LDKTKFLVP  +++ 
Sbjct: 8   PSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVP--QELT 65

Query: 312 MSELIKIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETY 371
           M++ + IIR R+ L A +AF L+VN  S+VS+S  ++E+Y   KDEDGF+YM YASQET+
Sbjct: 66  MTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF 125

Query: 372 G 372
           G
Sbjct: 126 G 126


>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
           sapiens]
          Length = 117

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 5/116 (4%)

Query: 258 FKQRRTFQQR-VDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
           FK+  + + R V+   I+ ++P + PVI E+  G  Q+  +DK K+LVP   D+ +++ +
Sbjct: 5   FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPS--DITVAQFM 61

Query: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
            IIR+R+QL + +A  L V+  ++   S  + ++YE EKDEDGFLY+ Y+ + T+G
Sbjct: 62  WIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116


>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
           sapiens]
          Length = 117

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 36/116 (31%), Positives = 66/116 (56%), Gaps = 5/116 (4%)

Query: 258 FKQRRTFQQRV-DVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
           +K+   F+ R  +   I++++P + PVI E+   + ++P LDK K+LVP   D+ + +  
Sbjct: 5   YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS--DLTVGQFY 61

Query: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
            +IR+R+ L    A    VN +++   S  + ++YE   +ED FLY+ Y+ +  YG
Sbjct: 62  FLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116


>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
          Length = 117

 Score = 62.0 bits (149), Expect = 8e-10
 Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 5/117 (4%)

Query: 258 FKQRRTFQQR-VDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
           +K+   F++R  +   I++++P + PVI E+   + ++  LDK K+LVP   D+ + +  
Sbjct: 5   YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAP-KARIGDLDKKKYLVPS--DLTVGQFY 61

Query: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGM 373
            +IR+R+ L A  A    VN + +   S  + ++Y+   +ED FLY+ Y+ +  YG+
Sbjct: 62  FLIRKRIHLRAEDALFFFVN-NVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL 117


>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
          Length = 2322

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 25/82 (30%), Positives = 32/82 (39%)

Query: 172  AAGPLVTPSDQGGSSSREREFLIFSPGDESNDTARPRTKEVPREGVCEIFPGGRSPSCSL 231
            AAG LV     GG+      F     G      A P+T E     V ++      P  S+
Sbjct: 1780 AAGQLVYAHGGGGTQQDGFHFRAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQASV 1839

Query: 232  PVRYQFGRRIPIQEAFLTRARP 253
            P+R   G R PI  A L+   P
Sbjct: 1840 PLRLTRGSRAPISRAQLSVVDP 1861


>gi|12383066 axotrophin [Homo sapiens]
          Length = 704

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 251 ARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDV 310
           A     TF  RR+ Q  ++ R +  ++   SP I    Q    +P   +    VPD R  
Sbjct: 287 ASSMSSTFFSRRSSQDSLNTRSLNSENSYVSPRILTASQSRSNVPSASE----VPDNRAS 342

Query: 311 NMSELIKIIRRRLQLNA 327
             S+  + +RRR  L++
Sbjct: 343 EASQGFRFLRRRWGLSS 359


>gi|153791466 AMIGO protein [Homo sapiens]
          Length = 493

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 334 VVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYGMKLSV 377
           V NG   VSVS   S +++  + EDG +Y  YA  ET+   LSV
Sbjct: 313 VTNG--TVSVSKDGSLLFQQVQVEDGGVYTCYAMGETFNETLSV 354


>gi|148539890 mannosyl (beta-1,4-)-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
          Length = 533

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 158 PQTCQLVWPPSFWWAAGPLVTPSDQGGSSSREREFLIFSPGDESNDTARPRT--KEVPRE 215
           P T  L  PP       P   P    GSS+R     + S        AR RT  +   R+
Sbjct: 120 PGTKMLERPPP----GRPEEKPEGANGSSARRPPRYLLS--------ARERTGGRGARRK 167

Query: 216 GV-CEIFPGGRSPSCSLPVRYQFGRRIPIQEAFLTRARP 253
            V C   PG   PSC +P   Q+   +P +E  + R  P
Sbjct: 168 WVECVCLPGWHGPSCGVPTVVQYS-NLPTKERLVPREVP 205


>gi|148539888 mannosyl (beta-1,4-)-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
          Length = 533

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 16/99 (16%)

Query: 158 PQTCQLVWPPSFWWAAGPLVTPSDQGGSSSREREFLIFSPGDESNDTARPRT--KEVPRE 215
           P T  L  PP       P   P    GSS+R     + S        AR RT  +   R+
Sbjct: 120 PGTKMLERPPP----GRPEEKPEGANGSSARRPPRYLLS--------ARERTGGRGARRK 167

Query: 216 GV-CEIFPGGRSPSCSLPVRYQFGRRIPIQEAFLTRARP 253
            V C   PG   PSC +P   Q+   +P +E  + R  P
Sbjct: 168 WVECVCLPGWHGPSCGVPTVVQYS-NLPTKERLVPREVP 205


>gi|194239709 dedicator of cytokinesis 9 isoform d [Homo sapiens]
          Length = 1253

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 293 QLPVLDKTKFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHS 339
           +L + DK+ +L+    +V M E I I+ + LQLN   A     NG S
Sbjct: 249 ELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDS 295


>gi|194239707 dedicator of cytokinesis 9 isoform c [Homo sapiens]
          Length = 1254

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 293 QLPVLDKTKFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHS 339
           +L + DK+ +L+    +V M E I I+ + LQLN   A     NG S
Sbjct: 250 ELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDS 296


>gi|194239705 dedicator of cytokinesis 9 isoform b [Homo sapiens]
          Length = 2068

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 293 QLPVLDKTKFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHS 339
           +L + DK+ +L+    +V M E I I+ + LQLN   A     NG S
Sbjct: 249 ELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDS 295


>gi|24308029 dedicator of cytokinesis 9 isoform a [Homo sapiens]
          Length = 2069

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 293 QLPVLDKTKFLVPDVRDVNMSELIKIIRRRLQLNANQAFLLVVNGHS 339
           +L + DK+ +L+    +V M E I I+ + LQLN   A     NG S
Sbjct: 250 ELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDS 296


>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
           isoform a [Homo sapiens]
          Length = 1047

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 18/112 (16%)

Query: 42  RAKHILHKDASVSSCGGDFKGGGSGEWKRQNFHD-SFSSNVLGYCDPTYPPLLQSTGQET 100
           R KH+  +   +   GGD         KR+  H   F +++      T  P  + + +  
Sbjct: 295 RVKHVEFQGVEILWTGGD---------KRETQHPIDFETSL----QRTASPDSKESSKVP 341

Query: 101 RPLTQAATLTQASCLSP----DSWGRVAERPNLGQGKFLVQLVGDMGEEANF 148
           R L  +A L  +S L+     +SW   +ERP    G F    + + GE+  F
Sbjct: 342 RHLISSAGLCNSSSLTENVWDESWKAPSERPGTSSGTFSPVRLDESGEDEVF 393


>gi|110611228 utrophin [Homo sapiens]
          Length = 3433

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 248 LTRARPAEKTFKQRRTFQQRVDVRLIQEQHPAKSPVITERYQGEKQLPVLD-KTKFLVPD 306
           + ++R  E    Q++TF + ++ R  +   P  + + T+   G K L +L+  T   +P 
Sbjct: 21  IIKSRSDEHNDVQKKTFTKWINARFSKSGKPPINDMFTDLKDGRKLLDLLEGLTGTSLPK 80

Query: 307 VRDVNMSELIKIIRRRLQ-LNANQAFLLVVNGHSMV 341
            R       +  + R LQ L+ N   L+ + G  +V
Sbjct: 81  ERGSTRVHALNNVNRVLQVLHQNNVELVNIGGTDIV 116


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,784,028
Number of Sequences: 37866
Number of extensions: 773946
Number of successful extensions: 2012
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 25
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.