Guide to the Human Genome
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Search of human proteins with 110825988

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
         (1621 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110825988 TAR RNA binding protein 1 [Homo sapiens]                3227   0.0  
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ...    40   0.014
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ...    40   0.014
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]     39   0.053
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ...    38   0.091
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]            38   0.091
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            37   0.20 
gi|147903292 nuclear localized factor 1 [Homo sapiens]                 37   0.20 
gi|4557439 cyclin-dependent kinase 3 [Homo sapiens]                    36   0.27 
gi|223634006 hypothetical protein LOC441869 [Homo sapiens]             35   0.45 
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom...    35   0.59 
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ...    34   1.0  
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]            34   1.0  
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s...    34   1.0  
gi|54873602 hypothetical protein LOC220382 [Homo sapiens]              34   1.0  
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ...    34   1.3  
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ...    34   1.3  
gi|89363026 calponin-homology and microtubule-associated protein...    34   1.3  
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    33   2.2  
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]            33   2.2  
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]            33   2.2  
gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo ...    33   2.2  
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ...    33   2.2  
gi|239743230 PREDICTED: hypothetical protein [Homo sapiens]            32   3.8  
gi|239508907 PREDICTED: hypothetical protein [Homo sapiens]            32   3.8  
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    32   3.8  
gi|55956786 spindle assembly associated Sfi1 homolog isoform a [...    32   5.0  
gi|55956784 spindle assembly associated Sfi1 homolog isoform b [...    32   5.0  
gi|9507173 taste receptor T2R5 [Homo sapiens]                          32   5.0  
gi|222144283 hypothetical protein LOC65998 [Homo sapiens]              32   6.5  

>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
          Length = 1621

 Score = 3227 bits (8368), Expect = 0.0
 Identities = 1621/1621 (100%), Positives = 1621/1621 (100%)

Query: 1    MEWVLAEALLSQSRDPRALLGALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEA 60
            MEWVLAEALLSQSRDPRALLGALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEA
Sbjct: 1    MEWVLAEALLSQSRDPRALLGALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEA 60

Query: 61   AREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGRPQLAAAL 120
            AREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGRPQLAAAL
Sbjct: 61   AREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGRPQLAAAL 120

Query: 121  AEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDE 180
            AEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDE
Sbjct: 121  AEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDE 180

Query: 181  AGPAEDAAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVLSALAEKL 240
            AGPAEDAAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVLSALAEKL
Sbjct: 181  AGPAEDAAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVLSALAEKL 240

Query: 241  LPEPGGDRARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRARYLLQRAVEVSAELGA 300
            LPEPGGDRARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRARYLLQRAVEVSAELGA
Sbjct: 241  LPEPGGDRARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRARYLLQRAVEVSAELGA 300

Query: 301  DCTCGPQEGNGPSLFWWSERKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFEY 360
            DCTCGPQEGNGPSLFWWSERKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFEY
Sbjct: 301  DCTCGPQEGNGPSLFWWSERKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFEY 360

Query: 361  AVSEENGCWLFHPSWHMCIYKRMFESENKILSKEGVIHFLELYETKILPFSPEFSEFIIG 420
            AVSEENGCWLFHPSWHMCIYKRMFESENKILSKEGVIHFLELYETKILPFSPEFSEFIIG
Sbjct: 361  AVSEENGCWLFHPSWHMCIYKRMFESENKILSKEGVIHFLELYETKILPFSPEFSEFIIG 420

Query: 421  PLMDALSESSLYSRSPGQPIGSCSPLGLKLQKFLVTYISLLPEEIKSSFLLKFIRKMTSR 480
            PLMDALSESSLYSRSPGQPIGSCSPLGLKLQKFLVTYISLLPEEIKSSFLLKFIRKMTSR
Sbjct: 421  PLMDALSESSLYSRSPGQPIGSCSPLGLKLQKFLVTYISLLPEEIKSSFLLKFIRKMTSR 480

Query: 481  HWCAVPILFLSKALANVPRHKALGIDGLLALRDVIHCTMITHQILLRGAAQCYLLQTAMN 540
            HWCAVPILFLSKALANVPRHKALGIDGLLALRDVIHCTMITHQILLRGAAQCYLLQTAMN
Sbjct: 481  HWCAVPILFLSKALANVPRHKALGIDGLLALRDVIHCTMITHQILLRGAAQCYLLQTAMN 540

Query: 541  LLDVEKVSLSDVSTFLMSLRQEESLGRGTSLWTELCDWLRVNESYFKPSPTCSSIGLHKT 600
            LLDVEKVSLSDVSTFLMSLRQEESLGRGTSLWTELCDWLRVNESYFKPSPTCSSIGLHKT
Sbjct: 541  LLDVEKVSLSDVSTFLMSLRQEESLGRGTSLWTELCDWLRVNESYFKPSPTCSSIGLHKT 600

Query: 601  SLNAYVKSIVQEYVKSSAWETGENCFMPDWFEAKLVSLMVLLAVDVEGMKTQYSGKQRTE 660
            SLNAYVKSIVQEYVKSSAWETGENCFMPDWFEAKLVSLMVLLAVDVEGMKTQYSGKQRTE
Sbjct: 601  SLNAYVKSIVQEYVKSSAWETGENCFMPDWFEAKLVSLMVLLAVDVEGMKTQYSGKQRTE 660

Query: 661  NVLRIFLDPLLDVLMKFSTNAYMPLLKTDRCLQLLLKLLNTCRLKGSSAQDDEVSTVLQN 720
            NVLRIFLDPLLDVLMKFSTNAYMPLLKTDRCLQLLLKLLNTCRLKGSSAQDDEVSTVLQN
Sbjct: 661  NVLRIFLDPLLDVLMKFSTNAYMPLLKTDRCLQLLLKLLNTCRLKGSSAQDDEVSTVLQN 720

Query: 721  FFMSTTESISEFILRRLTMNELNSVSDLDRCHLYLMVLTELINLHLKVGWKRGNPIWRVI 780
            FFMSTTESISEFILRRLTMNELNSVSDLDRCHLYLMVLTELINLHLKVGWKRGNPIWRVI
Sbjct: 721  FFMSTTESISEFILRRLTMNELNSVSDLDRCHLYLMVLTELINLHLKVGWKRGNPIWRVI 780

Query: 781  SLLKNASIQHLQEMDSGQEPTVGSQIQRVVSMAALAMVCEAIDQKPELQLDSLHAGPLES 840
            SLLKNASIQHLQEMDSGQEPTVGSQIQRVVSMAALAMVCEAIDQKPELQLDSLHAGPLES
Sbjct: 781  SLLKNASIQHLQEMDSGQEPTVGSQIQRVVSMAALAMVCEAIDQKPELQLDSLHAGPLES 840

Query: 841  FLSSLQLNQTLQKPHAEEQSSYAHPLECSSVLEESSSSQGWGKIVAQYIHDQWVCLSFLL 900
            FLSSLQLNQTLQKPHAEEQSSYAHPLECSSVLEESSSSQGWGKIVAQYIHDQWVCLSFLL
Sbjct: 841  FLSSLQLNQTLQKPHAEEQSSYAHPLECSSVLEESSSSQGWGKIVAQYIHDQWVCLSFLL 900

Query: 901  KKYHTLIPTTGSEILEPFLPAVQMPIRTLQSALEALTVLSSDQVLPVFHCLKVLVPKLLT 960
            KKYHTLIPTTGSEILEPFLPAVQMPIRTLQSALEALTVLSSDQVLPVFHCLKVLVPKLLT
Sbjct: 901  KKYHTLIPTTGSEILEPFLPAVQMPIRTLQSALEALTVLSSDQVLPVFHCLKVLVPKLLT 960

Query: 961  SSESLCIESFDMAWKIISSLSNTQLIFWANLKAFVQFVFDNKVLTIAAKIKGQAYFKIKE 1020
            SSESLCIESFDMAWKIISSLSNTQLIFWANLKAFVQFVFDNKVLTIAAKIKGQAYFKIKE
Sbjct: 961  SSESLCIESFDMAWKIISSLSNTQLIFWANLKAFVQFVFDNKVLTIAAKIKGQAYFKIKE 1020

Query: 1021 IMYKIIEMSAIKTGVFNTLISYCCQSWIVSASNVSQGSLSSAKNYSELILEACIFGTVFR 1080
            IMYKIIEMSAIKTGVFNTLISYCCQSWIVSASNVSQGSLSSAKNYSELILEACIFGTVFR
Sbjct: 1021 IMYKIIEMSAIKTGVFNTLISYCCQSWIVSASNVSQGSLSSAKNYSELILEACIFGTVFR 1080

Query: 1081 RDQRLVQDVQTFIENLGHDCAANIVMENTKREDHYVRICAVKFLCLLDGSNMSHKLFIED 1140
            RDQRLVQDVQTFIENLGHDCAANIVMENTKREDHYVRICAVKFLCLLDGSNMSHKLFIED
Sbjct: 1081 RDQRLVQDVQTFIENLGHDCAANIVMENTKREDHYVRICAVKFLCLLDGSNMSHKLFIED 1140

Query: 1141 LAIKLLDKDELVSKSKKRYYVNSLQHRVKNRVWQTLLVLFPRLDQNFLNGIIDRIFQAGF 1200
            LAIKLLDKDELVSKSKKRYYVNSLQHRVKNRVWQTLLVLFPRLDQNFLNGIIDRIFQAGF
Sbjct: 1141 LAIKLLDKDELVSKSKKRYYVNSLQHRVKNRVWQTLLVLFPRLDQNFLNGIIDRIFQAGF 1200

Query: 1201 TNNQASIKYFIEWIIILILHKFPQFLPKFWDCFSYGEENLKTSICTFLAVLSHLDIITQN 1260
            TNNQASIKYFIEWIIILILHKFPQFLPKFWDCFSYGEENLKTSICTFLAVLSHLDIITQN
Sbjct: 1201 TNNQASIKYFIEWIIILILHKFPQFLPKFWDCFSYGEENLKTSICTFLAVLSHLDIITQN 1260

Query: 1261 IPEKKLILKQALIVVLQWCFNHNFSVRLYALVALKKLWTVCKVLSVEEFDALTPVIESSL 1320
            IPEKKLILKQALIVVLQWCFNHNFSVRLYALVALKKLWTVCKVLSVEEFDALTPVIESSL
Sbjct: 1261 IPEKKLILKQALIVVLQWCFNHNFSVRLYALVALKKLWTVCKVLSVEEFDALTPVIESSL 1320

Query: 1321 HQVESMHGAGNAKKNWQRIQEHFFFATFHPLKDYCLETIFYILPRLSGLIEDEWITIDKF 1380
            HQVESMHGAGNAKKNWQRIQEHFFFATFHPLKDYCLETIFYILPRLSGLIEDEWITIDKF
Sbjct: 1321 HQVESMHGAGNAKKNWQRIQEHFFFATFHPLKDYCLETIFYILPRLSGLIEDEWITIDKF 1380

Query: 1381 TRFTDVPLAAGFQWYLSQTQLSKLKPGDWSQQDIGTNLVEADNQAEWTDVQKKIIPWNSR 1440
            TRFTDVPLAAGFQWYLSQTQLSKLKPGDWSQQDIGTNLVEADNQAEWTDVQKKIIPWNSR
Sbjct: 1381 TRFTDVPLAAGFQWYLSQTQLSKLKPGDWSQQDIGTNLVEADNQAEWTDVQKKIIPWNSR 1440

Query: 1441 VSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCI 1500
            VSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCI
Sbjct: 1441 VSDLDLELLFQDRAARLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCI 1500

Query: 1501 SDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEK 1560
            SDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEK
Sbjct: 1501 SDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEK 1560

Query: 1561 SLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTK 1620
            SLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTK
Sbjct: 1561 SLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLSHGDTK 1620

Query: 1621 P 1621
            P
Sbjct: 1621 P 1621


>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
            sapiens]
          Length = 5033

 Score = 40.4 bits (93), Expect = 0.014
 Identities = 46/150 (30%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 111  AGRPQLAAALAEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVAL 170
            AG  +  A  AEE    L        A A   V+AA G  LR      L  RV       
Sbjct: 4260 AGAAEAGAEGAEEGAAGLEGTAATAAAGATARVVAAAGRALRGLSYRSLRRRVRRLRRLT 4319

Query: 171  ALGGGGDGDEAGPAEDAAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASL-GSGRVE-- 227
            A              +AA  VA  L   + + G A   A  G L     SL G G VE  
Sbjct: 4320 A-------------REAATAVAALLWAAVTRAGAAGAGAAAGALGLLWGSLFGGGLVEGA 4366

Query: 228  EKLLVLSALAEKLLPEPGGDRARGAREAGP 257
            +K+ V   LA   +P+P  D   G + AGP
Sbjct: 4367 KKVTVTELLAG--MPDPTSDEVHGEQPAGP 4394



 Score = 31.2 bits (69), Expect = 8.5
 Identities = 50/174 (28%), Positives = 59/174 (33%), Gaps = 37/174 (21%)

Query: 44   EDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAA 103
            E +E  G+G A A  E A E AAG     L       A G           RV+ AAG A
Sbjct: 4253 ETDEDEGAGAAEAGAEGAEEGAAG-----LEGTAATAAAGA--------TARVVAAAGRA 4299

Query: 104  LRSCV------RLAGRPQLAAALAEEALRDLL-AGWRAPGAEAAVEVLAAVGPCLRPRED 156
            LR         R+    +L A  A  A+  LL A     GA  A     A+G        
Sbjct: 4300 LRGLSYRSLRRRVRRLRRLTAREAATAVAALLWAAVTRAGAAGAGAAAGALGLLWGSLFG 4359

Query: 157  GPLLERVAGTAVALALGG-----------------GGDGDEAGPAEDAAALVAG 193
            G L+E      V   L G                 GGD D  G +E A     G
Sbjct: 4360 GGLVEGAKKVTVTELLAGMPDPTSDEVHGEQPAGPGGDADGEGASEGAGDAAEG 4413


>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
            sapiens]
          Length = 5038

 Score = 40.4 bits (93), Expect = 0.014
 Identities = 46/150 (30%), Positives = 56/150 (37%), Gaps = 18/150 (12%)

Query: 111  AGRPQLAAALAEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVAL 170
            AG  +  A  AEE    L        A A   V+AA G  LR      L  RV       
Sbjct: 4265 AGAAEAGAEGAEEGAAGLEGTAATAAAGATARVVAAAGRALRGLSYRSLRRRVRRLRRLT 4324

Query: 171  ALGGGGDGDEAGPAEDAAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASL-GSGRVE-- 227
            A              +AA  VA  L   + + G A   A  G L     SL G G VE  
Sbjct: 4325 A-------------REAATAVAALLWAAVTRAGAAGAGAAAGALGLLWGSLFGGGLVEGA 4371

Query: 228  EKLLVLSALAEKLLPEPGGDRARGAREAGP 257
            +K+ V   LA   +P+P  D   G + AGP
Sbjct: 4372 KKVTVTELLAG--MPDPTSDEVHGEQPAGP 4399



 Score = 31.2 bits (69), Expect = 8.5
 Identities = 50/174 (28%), Positives = 59/174 (33%), Gaps = 37/174 (21%)

Query: 44   EDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAA 103
            E +E  G+G A A  E A E AAG     L       A G           RV+ AAG A
Sbjct: 4258 ETDEDEGAGAAEAGAEGAEEGAAG-----LEGTAATAAAGA--------TARVVAAAGRA 4304

Query: 104  LRSCV------RLAGRPQLAAALAEEALRDLL-AGWRAPGAEAAVEVLAAVGPCLRPRED 156
            LR         R+    +L A  A  A+  LL A     GA  A     A+G        
Sbjct: 4305 LRGLSYRSLRRRVRRLRRLTAREAATAVAALLWAAVTRAGAAGAGAAAGALGLLWGSLFG 4364

Query: 157  GPLLERVAGTAVALALGG-----------------GGDGDEAGPAEDAAALVAG 193
            G L+E      V   L G                 GGD D  G +E A     G
Sbjct: 4365 GGLVEGAKKVTVTELLAGMPDPTSDEVHGEQPAGPGGDADGEGASEGAGDAAEG 4418


>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
          Length = 651

 Score = 38.5 bits (88), Expect = 0.053
 Identities = 24/60 (40%), Positives = 25/60 (41%)

Query: 134 APGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDEAGPAEDAAALVAG 193
           AP  E A E   A  P   P +    L        AL LGG GD DE G A D AA   G
Sbjct: 33  APPPEGAQEAAPAPRPPPEPDDAAAALRLALDQLSALGLGGAGDTDEEGAAGDGAAAAGG 92


>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
           sapiens]
          Length = 537

 Score = 37.7 bits (86), Expect = 0.091
 Identities = 34/93 (36%), Positives = 46/93 (49%), Gaps = 23/93 (24%)

Query: 157 GPLLERVAGTAVALA-LGGGGDGDEAGPAED-----------AAALVAGRLLPVLV--QC 202
           GP +E +AG   + A L G G     GPAE            AA+ V+G  LP+++  + 
Sbjct: 283 GPQVEALAGELSSWAQLWGEGQAPRPGPAERPFPGEKGPPGAAASAVSGSWLPIMLESEA 342

Query: 203 GG--AALRAVW-------GGLAAPGASLGSGRV 226
           GG  AA +A W       G  AAPG SLG+ R+
Sbjct: 343 GGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRL 375


>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
          Length = 782

 Score = 37.7 bits (86), Expect = 0.091
 Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 21/157 (13%)

Query: 20  LGALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGR 79
           +G LCQ  A+ + +              A+G  GA  L   AR++ + Y   + R L  +
Sbjct: 312 VGGLCQVAAAYQELFA------------AQGPAGAEKLAAFARQLGSRYFALVERRL-AQ 358

Query: 80  PAGGPDPSLQPR-----HRRRVLRAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRA 134
             GG D SL  R     HRR  LRA GA L +        ++   +A E L   L G RA
Sbjct: 359 EQGGGDNSLLVRALDRFHRR--LRAPGALLAAAGLADAATEIVERVARERLGHHLQGLRA 416

Query: 135 PGAEAAVEVLAAV-GPCLRPREDGPLLERVAGTAVAL 170
                  +V  A+  P +  +E   L E +A  A ++
Sbjct: 417 AFLGCLTDVRQALAAPRVAGKEGPGLAELLANVASSI 453


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 59/217 (27%), Positives = 83/217 (38%), Gaps = 14/217 (6%)

Query: 74  RSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGRPQLAAALAEEALRDLLAG-- 131
           R  + R  GG  P  + +  R+    AGA  R   +  GR + +AA  +     L +   
Sbjct: 438 RGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKK-QGRQKASAAGTKSRGGGLKSHSG 496

Query: 132 ---WR-APGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDEAGPAEDA 187
              WR    AEAA E   A G   R R+  P  ++ A  A A +  GG    +   A  A
Sbjct: 497 KNLWRRGQKAEAAGEKATAAGAKSRGRKQ-PRRQKPA-VAGAKSRVGGSKSRQRQKAVAA 554

Query: 188 AALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVLSALAEKLLPEPGGD 247
            A   G       + GG      WG  AA   + G G  +      +A   K     GG 
Sbjct: 555 GATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGK 614

Query: 248 RARGAREAGPDARRCWRFWRTVQAGLGQADALTRKRA 284
           +A   + AG  A+   + WR      GQ DA   ++A
Sbjct: 615 KAWRQKAAGTGAKSRKKPWRR-----GQKDAAAAEKA 646


>gi|147903292 nuclear localized factor 1 [Homo sapiens]
          Length = 369

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 31/80 (38%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 41  QRLEDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGR-PAGG-PDPSLQPRHRRRVLR 98
           +RLE E     G AG     A E   G     LR LR   PAGG P P         VLR
Sbjct: 240 ERLEAEGTVALGRAGDALRLAAEYCPGTGRLRLRLLRAESPAGGAPGPRAVSCRLSLVLR 299

Query: 99  AAGAALRSCVRLAGRPQLAA 118
             G ALR C  + GR + A+
Sbjct: 300 PPGTALRQCSTVVGRSRKAS 319


>gi|4557439 cyclin-dependent kinase 3 [Homo sapiens]
          Length = 305

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 1527 IDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEI 1586
            +D  Q+ +  G    GV   AK+ +  Q    +K  L L  E EG+P+  I+++ +  E+
Sbjct: 1    MDMFQKVEKIGEGTYGVVYKAKNRETGQLVALKKIRLDL--EMEGVPSTAIREISLLKEL 58

Query: 1587 PQQGIIRSLN-VHVSGAL-LIWEYTRQQLLSHGDTKP 1621
                I+R L+ VH    L L++E+  Q L  + D+ P
Sbjct: 59   KHPNIVRLLDVVHNERKLYLVFEFLSQDLKKYMDSTP 95


>gi|223634006 hypothetical protein LOC441869 [Homo sapiens]
          Length = 399

 Score = 35.4 bits (80), Expect = 0.45
 Identities = 59/191 (30%), Positives = 70/191 (36%), Gaps = 28/191 (14%)

Query: 28  ASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPS 87
           A+A R   LRFLL R    +AR   GA AL  AA    +  +  LL         G DP 
Sbjct: 211 AAAGRGAALRFLLARGARVDARDGAGATALGLAAALGRSQDIEVLL-------GHGADPG 263

Query: 88  LQPRHRRRVL-RAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRAPGAEAAVEVLAA 146
           ++ RH R  L RAA       V+L     L    AE   RD L     P   A+ E    
Sbjct: 264 IRDRHGRSALHRAAARGHLLAVQL-----LVTQGAEVDARDTLG--LTPLHHASREGHVE 316

Query: 147 VGPCLRPR----------EDGPL---LERVAGTAVALALGGGGDGDEAGPAEDAAALVAG 193
           V  CL  R             PL    ER  G  V L L  G          + A +  G
Sbjct: 317 VAGCLLDRGAQVDATGWLRKTPLHLAAERGHGPTVGLLLSRGASPTLRTQWAEVAQMPEG 376

Query: 194 RLLPVLVQCGG 204
            L   L + GG
Sbjct: 377 DLPQALPELGG 387



 Score = 35.0 bits (79), Expect = 0.59
 Identities = 60/177 (33%), Positives = 69/177 (38%), Gaps = 16/177 (9%)

Query: 36  LRFLLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRR 95
           +R LLQR     A    G  AL EAA       +  LL       A      L P H   
Sbjct: 90  VRLLLQRGAPVGAVDRAGRTALHEAAWH-GHSRVAELLLQRGASAAARSGTGLTPLHWAA 148

Query: 96  VLRAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRAPGAEAAV-EVLAAVGPCLRPR 154
            L     A R  +  A  P  AAA AE+A     A W A G   AV E+LAA G  L   
Sbjct: 149 ALGHTLLAAR--LLEAPGPGPAAAEAEDARGWTAAHWAAAGGRLAVLELLAAGGAGL--- 203

Query: 155 EDGPLLERVA---GTAVALALGGGG-----DGDEAGPAEDAAALVAGRLLPVLVQCG 203
            DG LL   A   G A+   L  G      DG  A     AAAL   + + VL+  G
Sbjct: 204 -DGALLVAAAAGRGAALRFLLARGARVDARDGAGATALGLAAALGRSQDIEVLLGHG 259


>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
           sapiens]
          Length = 999

 Score = 35.0 bits (79), Expect = 0.59
 Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 181 AGPAEDAAAL---VAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSGRVEEKLLVLSALA 237
           AG AE  + L   +   LLP +   G AA     GG    G S  S          S+L+
Sbjct: 112 AGRAEQGSTLRRRIREHLLPAVK--GPAAASGAAGGTPPGGRSPDSAPSSSS--ASSSLS 167

Query: 238 EKLLPEPGGDRAR--GAREAGPDARRC 262
               P P GDRAR  GAR  GP A  C
Sbjct: 168 SSPQPPPRGDRARDEGARRQGPGAHLC 194


>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
           sapiens]
          Length = 284

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 53/185 (28%), Positives = 64/185 (34%), Gaps = 26/185 (14%)

Query: 19  LLGALCQGEA-SAERVETLRFLLQRLEDEEARGSGGAGALPE--------AAREVAAGYL 69
           L G  C  +A SAE  E   FLL R     A         PE         AR      +
Sbjct: 6   LRGQRCADKAGSAESEENRNFLLMRPGQRTAPAGSPTTPRPENDPSREIGEARASGQDQV 65

Query: 70  VPLLRS--------LRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAG----RPQLA 117
           +P   +        L  R    P P+  PR R R LR     LR+ V +AG    R  L 
Sbjct: 66  LPTHPAPCHSYPTRLPDRHPRPPAPAPAPRERARGLR-----LRTVVGVAGVLVERDDLH 120

Query: 118 AALAEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGD 177
           A LA + +  LL         A +   AA    L     G   ER      +   GGGG 
Sbjct: 121 ALLAIQVIVQLLCAAAEARGAATLPAAAATTTALDGPGAGGGAERGGSGRSSAGGGGGGG 180

Query: 178 GDEAG 182
           G   G
Sbjct: 181 GGGGG 185


>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 378

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 55/171 (32%), Positives = 64/171 (37%), Gaps = 26/171 (15%)

Query: 25  QGEASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLR-SLRGRPAGG 83
           Q  AS E     R L  +LE   AR +  A    E A+  A   LV  LR SLR      
Sbjct: 149 QEAASRELESKCRALESQLE---ARAAANAELRREVAQREA---LVSALRCSLRTEERRF 202

Query: 84  PDPSLQPRHRRRVL------RAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRAPGA 137
            +   +  HR  VL          AA  SC   A R +L AA A+   R   A   +PGA
Sbjct: 203 LEELRRRSHRATVLGTELQKHTEAAAYLSCQLHAARQRLQAAAAQ---RPQPAPAASPGA 259

Query: 138 EAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDEAGPAEDAA 188
                     GP  RP       +R  G  V   L G       GPA DAA
Sbjct: 260 P---------GPS-RPAARAQPAQRARGPGVGARLAGVTRDGRGGPARDAA 300


>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
           sapiens]
          Length = 378

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 55/171 (32%), Positives = 64/171 (37%), Gaps = 26/171 (15%)

Query: 25  QGEASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLR-SLRGRPAGG 83
           Q  AS E     R L  +LE   AR +  A    E A+  A   LV  LR SLR      
Sbjct: 149 QEAASRELESKCRALESQLE---ARAAANAELRREVAQREA---LVSALRCSLRTEERRF 202

Query: 84  PDPSLQPRHRRRVL------RAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRAPGA 137
            +   +  HR  VL          AA  SC   A R +L AA A+   R   A   +PGA
Sbjct: 203 LEELRRRSHRATVLGTELQKHTEAAAYLSCQLHAARQRLQAAAAQ---RPQPAPAASPGA 259

Query: 138 EAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALGGGGDGDEAGPAEDAA 188
                     GP  RP       +R  G  V   L G       GPA DAA
Sbjct: 260 P---------GPS-RPAARAQPAQRARGPGVGARLAGVTRDGRGGPARDAA 300


>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
          Length = 426

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 59/224 (26%), Positives = 80/224 (35%), Gaps = 30/224 (13%)

Query: 21  GALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVA-AGYLVPLLRSLRG- 78
           GAL  G    +  E  R LL  ++   +          ++ R+V    YL   ++   G 
Sbjct: 48  GALLSGAEGGDVREATRDLLSFIDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGL 107

Query: 79  ---RPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGRPQLAAALAEEALRDLLAGWRAP 135
               P G P PS      +R L A  A           P +AA    +A     A   A 
Sbjct: 108 MGAAPPGPPSPSAADTPAKRPLAAPSA-----------PTVAAPAHGKAAPRREASQAAA 156

Query: 136 GAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVALALG------GGGDGDEAGPAEDAAA 189
            A      LAA+   LR    G   E   G   A A G      GG  GD AGPA  A A
Sbjct: 157 AASLQSRSLAALFDSLRHVPGGA--EPAGGEVAAPAAGLGGAGTGGAGGDVAGPA-GATA 213

Query: 190 LVAGRLLPVLVQCGGAAL-----RAVWGGLAAPGASLGSGRVEE 228
           +   R +P+  +    +      RA  GG    G  +  G +E+
Sbjct: 214 IPGARKVPLRARNLPPSFFTEPSRAGGGGCGPSGPDVSLGDLEK 257


>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
           sapiens]
          Length = 427

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 11/58 (18%)

Query: 180 EAGPAEDAAALVAGRLLPVLV--QCGG--AALRAVW-------GGLAAPGASLGSGRV 226
           E GP   AA+ V+G  LP+++  + GG  AA +A W       G  AAPG SLG+ R+
Sbjct: 208 EKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRL 265


>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
           sapiens]
          Length = 427

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 11/58 (18%)

Query: 180 EAGPAEDAAALVAGRLLPVLV--QCGG--AALRAVW-------GGLAAPGASLGSGRV 226
           E GP   AA+ V+G  LP+++  + GG  AA +A W       G  AAPG SLG+ R+
Sbjct: 208 EKGPPGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPRL 265


>gi|89363026 calponin-homology and microtubule-associated protein
           [Homo sapiens]
          Length = 236

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 39  LLQRLEDEEARGSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDP 86
           L QRLE+ + R   GAG+L E A +  +GY+  +  S + R  G PDP
Sbjct: 107 LRQRLEERQRRRKQGAGSLQELAPQDGSGYM-DVGVSQKARGEGVPDP 153


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
           [Homo sapiens]
          Length = 3969

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 25/141 (17%)

Query: 50  GSGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVR 109
           G GG   L  A R+     L+P      G P GG  P   P        AA A       
Sbjct: 20  GGGGRRGLGGAPRQRVPALLLP-----PGPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGV 74

Query: 110 LAGRPQLAAALAEEALRDLLAGWRA----------PGAEAAVEVLAAVGPCLRPREDGPL 159
             G    +AA +  A     +   A          PG +AA++V AA+G  LR       
Sbjct: 75  PGGAAAASAASSSSASSSSSSSSSASSGPALLRVGPGFDAALQVSAAIGTNLR------R 128

Query: 160 LERVAGTAVALALGGGGDGDE 180
              V G +     GGGG G++
Sbjct: 129 FRAVFGESG----GGGGSGED 145


>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 39/109 (35%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 55  GALPEAAREVAAGYLVPLLRSLRGR-PAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGR 113
           G  P  A    +   +PL    R R P     P L+PRH R+ +   G      V  A  
Sbjct: 7   GTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPAARA 66

Query: 114 PQLAAALAEEALRDLLAGW-------RAPGAEAAVEVLAAV-GPCLRPR 154
             LA ALA  A R LLAG        R PG    V VL  V GP   PR
Sbjct: 67  LALALALALAAGRRLLAGLGLGRPRSRPPGRALLVVVLLVVLGPGSVPR 115


>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 344

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 39/109 (35%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 55  GALPEAAREVAAGYLVPLLRSLRGR-PAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGR 113
           G  P  A    +   +PL    R R P     P L+PRH R+ +   G      V  A  
Sbjct: 7   GTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPAARA 66

Query: 114 PQLAAALAEEALRDLLAGW-------RAPGAEAAVEVLAAV-GPCLRPR 154
             LA ALA  A R LLAG        R PG    V VL  V GP   PR
Sbjct: 67  LALALALALAAGRRLLAGLGLGRPRSRPPGRALLVVVLLVVLGPGSVPR 115


>gi|239745211 PREDICTED: hypothetical protein XP_002343409 [Homo
            sapiens]
          Length = 1281

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 798  QEPTVGSQIQRVVSMAALAMVCEAIDQKPELQLDSLHAGPLESFLSSLQLNQTLQKPHAE 857
            QE +  ++  +VV +    M C+  + K +L+L  L    L S+  +   NQ LQ+P  E
Sbjct: 938  QENSALAEQLQVVLIDKAGMQCDLEELKKKLELTELTLQQLSSWCEAPDANQQLQQPTDE 997

Query: 858  EQSSYAHPLECSSVLEESSSSQGWGKIVAQYIHDQ 892
                 AH      V+E     Q   +  A+Y+H +
Sbjct: 998  RAQLEAH---LGQVMEWLKYLQMEREQYAEYLHGE 1029


>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
           sapiens]
          Length = 344

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 39/109 (35%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 55  GALPEAAREVAAGYLVPLLRSLRGR-PAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGR 113
           G  P  A    +   +PL    R R P     P L+PRH R+ +   G      V  A  
Sbjct: 7   GTGPVGAPSRCSPSALPLTSPRRPRAPPPTLAPHLRPRHLRKEVERGGPLGPVRVPAARA 66

Query: 114 PQLAAALAEEALRDLLAGW-------RAPGAEAAVEVLAAV-GPCLRPR 154
             LA ALA  A R LLAG        R PG    V VL  V GP   PR
Sbjct: 67  LALALALALAAGRRLLAGLGLGRPRSRPPGRALLVVVLLVVLGPGSVPR 115


>gi|239743230 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 130 AGWRAPGAEAAVEVLAAVGPCL--RPREDGPLLE-RVAGTAVALALGGGGDGDEAGPAED 186
           AG+ A   +   EV+ A       RP + G ++   VAG  V L  G G   D  GP   
Sbjct: 192 AGFEAESVDGLAEVMGATAEVALARPVKSGAVVVGAVAGVVVCLKKGAGKGTDAGGPMLL 251

Query: 187 AAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSG 224
                 G +  VLV  G   L         PGA L  G
Sbjct: 252 KTGWKVGAV--VLVVVGREELEGAVAVTEGPGAPLAPG 287


>gi|239508907 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 130 AGWRAPGAEAAVEVLAAVGPCL--RPREDGPLLE-RVAGTAVALALGGGGDGDEAGPAED 186
           AG+ A   +   EV+ A       RP + G ++   VAG  V L  G G   D  GP   
Sbjct: 192 AGFEAESVDGLAEVMGATAEVALARPVKSGAVVVGAVAGVVVCLKKGAGKGTDAGGPMLL 251

Query: 187 AAALVAGRLLPVLVQCGGAALRAVWGGLAAPGASLGSG 224
                 G +  VLV  G   L         PGA L  G
Sbjct: 252 KTGWKVGAV--VLVVVGREELEGAVAVTEGPGAPLAPG 287


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 32.3 bits (72), Expect = 3.8
 Identities = 40/133 (30%), Positives = 46/133 (34%), Gaps = 18/133 (13%)

Query: 51  SGGAGALPEAAREVAAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRL 110
           +G AGA P A  E A G       + R RP GG      P   RR L  AG A     +L
Sbjct: 68  AGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPA-PPAAKL 126

Query: 111 AGRPQLAAALAEEALRDLLAGWRAPGAEAAVEVLAAVGPCLRPREDGPLLERVAGTAVAL 170
              P+ +A                 G+ A V   AAV     P   GP          A 
Sbjct: 127 RPPPEGSA-----------------GSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAAR 169

Query: 171 ALGGGGDGDEAGP 183
           A  G G G   GP
Sbjct: 170 AGPGPGPGPGPGP 182


>gi|55956786 spindle assembly associated Sfi1 homolog isoform a
           [Homo sapiens]
          Length = 1242

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 95  RVLRAAGAALRSCVRLAGRPQLAAALA-EEALRDLLAGWRAP--GAEAAVEVLAAVGPCL 151
           R+LR A +   S  +L  + Q+ AA +   A+R     W+    G     + LAA+ P  
Sbjct: 892 RLLRFAASMKASRQQLQAQQQVQAAHSLHRAVRRCATLWKQKVLGRGGKPQPLAAIAPSR 951

Query: 152 RPREDGPLLERVAGTAVALALGGGGDG 178
           +   +GPLL R+A         G GDG
Sbjct: 952 KVTFEGPLLNRIA--------AGAGDG 970


>gi|55956784 spindle assembly associated Sfi1 homolog isoform b
           [Homo sapiens]
          Length = 1211

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 95  RVLRAAGAALRSCVRLAGRPQLAAALA-EEALRDLLAGWRAP--GAEAAVEVLAAVGPCL 151
           R+LR A +   S  +L  + Q+ AA +   A+R     W+    G     + LAA+ P  
Sbjct: 861 RLLRFAASMKASRQQLQAQQQVQAAHSLHRAVRRCATLWKQKVLGRGGKPQPLAAIAPSR 920

Query: 152 RPREDGPLLERVAGTAVALALGGGGDG 178
           +   +GPLL R+A         G GDG
Sbjct: 921 KVTFEGPLLNRIA--------AGAGDG 939


>gi|9507173 taste receptor T2R5 [Homo sapiens]
          Length = 299

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 1205 ASIKYFIEWIIILILHKFPQFLPKFW----DCFSYGEENLKTSICTFLAVLSHLDIITQN 1260
            A  ++ ++W+IIL L  FP F    W      F            TFL+V     I T +
Sbjct: 52   AGCRFLLQWLIILDLSLFPLFQSSRWLRYLSIFWVLVSQASLWFATFLSVFYCKKITTFD 111

Query: 1261 IPEKKLILKQALIVVLQWCFNHNFSVRLYALVAL 1294
             P   L LKQ    +  WC    F + L   V +
Sbjct: 112  RP-AYLWLKQRAYNLSLWCLLGYFIINLLLTVQI 144


>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
          Length = 678

 Score = 31.6 bits (70), Expect = 6.5
 Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 18/124 (14%)

Query: 9   LLSQSRDPRALLGALCQGEASAERVETLRFLLQRLEDEEARGSGGAGALPEAAREVAAGY 68
           ++S S D    LGA   GEA    V+      +  E+EE  G+G     P+   +  AG 
Sbjct: 162 VISNSWDAHLGLGAC--GEAEGLGVQGAEEEEEEEEEEEEEGAGVPACPPKGPGKAPAG- 218

Query: 69  LVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSCVRLAGRPQLAAALAEEALRDL 128
                   R +  GGP   + PR RR  L A+        R  G   L A   E  L++ 
Sbjct: 219 -----GGCRRQRRGGP---VAPRARRLRLSASR-------RAGGSRGLGARRLERRLKES 263

Query: 129 LAGW 132
           L  W
Sbjct: 264 LQNW 267


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,173,876
Number of Sequences: 37866
Number of extensions: 2631875
Number of successful extensions: 7471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7431
Number of HSP's gapped (non-prelim): 79
length of query: 1621
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1505
effective length of database: 13,855,062
effective search space: 20851868310
effective search space used: 20851868310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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