Guide to the Human Genome
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Name: LOC100289289 Sequence: fasta or formatted (1281aa) NCBI GI: 239745211
Description:

PREDICTED: hypothetical protein XP_002343409

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        105           3
 C cysteine            1.8         23           1
 D aspartate           3.0         38           2
 E glutamate          10.7        137           3
 F phenylalanine       2.0         26           1
 G glycine             8.3        106           3
 H histidine           2.6         33           2
 I isoleucine          2.7         34           1
 K lysine              4.4         56           3
 L leucine            12.2        156           4
 M methionine          2.6         33           1
 N asparagine          3.1         40           2
 P proline             5.5         70           3
 Q glutamine           8.0        103           3
 R arginine            6.2         80           2
 S serine              7.2         92           2
 T threonine           3.5         45           1
 V valine              5.1         65           2
 W tryptophan          1.9         24           2
 Y tyrosine            1.2         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343409 
GOLGA2                0.129   Golgi autoantigen, golgin subfamily a, 2 
GOLGA6B               0.043   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6D               0.042   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.042   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6                0.042   golgi autoantigen, golgin subfamily a, 6 
LOC728080             0.039   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.039   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.039   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.039   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.038   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.038   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.038   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.038   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.037   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.037   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.037   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.037   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.036   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.036   PREDICTED: Golgin subfamily A member 8-like protein...
LOC727909             0.036   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.036   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.035   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC728498             0.035   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.035   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC728498             0.035   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC283685             0.035   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GOLGA8B               0.035   golgi autoantigen, golgin subfamily a, 8B 
GOLGA8A               0.035   golgi autoantigen, golgin subfamily a, 8A 
LOC390561             0.034   PREDICTED: similar to hect domain and RLD 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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