| Name: LOC653889 | Sequence: fasta or formatted (406aa) | NCBI GI: 169172639 | |
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Description: PREDICTED: similar to U5 snRNP-associated 102 kDa protein
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Referenced in:
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 12.6 51 2 C cysteine 2.2 9 1 D aspartate 3.4 14 1 E glutamate 10.1 41 2 F phenylalanine 3.0 12 2 G glycine 3.4 14 1 H histidine 2.7 11 1 I isoleucine 4.2 17 1 K lysine 8.9 36 2 L leucine 11.1 45 3 M methionine 2.0 8 2 N asparagine 3.4 14 1 P proline 3.4 14 1 Q glutamine 3.9 16 2 R arginine 7.4 30 2 S serine 5.7 23 2 T threonine 2.5 10 1 V valine 4.4 18 1 W tryptophan 3.7 15 1 Y tyrosine 2.0 8 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 PREDICTED: similar to U5 snRNP-associated 102 kDa p... PRPF6 0.975 PRP6 pre-mRNA processing factor 6 homolog CRNKL1 0.045 crooked neck-like 1 protein PDCD11 0.035 programmed cell death 11 TMTC1 0.029 transmembrane and tetratricopeptide repeat containin... XAB2 0.027 XPA binding protein 2 OGT 0.020 O-linked GlcNAc transferase isoform 2 OGT 0.020 O-linked GlcNAc transferase isoform 1 PRPF39 0.020 PRP39 pre-mRNA processing factor 39 homolog TTC33 0.017 tetratricopeptide repeat domain 33 TMTC3 0.017 transmembrane and tetratricopeptide repeat containi... SART3 0.015 squamous cell carcinoma antigen recognized by T cells... TMTC4 0.015 transmembrane and tetratricopeptide repeat containi... TMTC4 0.015 transmembrane and tetratricopeptide repeat containi... TPM4 0.012 tropomyosin 4 isoform 1 TPM3 0.012 tropomyosin 3 isoform 1 FKBP8 0.012 FK506-binding protein 8 CEP250 0.012 centrosomal protein 2 UTP6 0.012 hepatocellular carcinoma-associated antigen 66 [Homo... TTC7A 0.012 tetratricopeptide repeat domain 7A PPL 0.011 periplakin TPM4 0.011 tropomyosin 4 isoform 2 TPM3 0.011 tropomyosin 3 isoform 5 TPM3 0.011 tropomyosin 3 isoform 4 LOC645202 0.010 PREDICTED: hypothetical protein LOC645202 CDC27 0.010 cell division cycle protein 27 isoform 1 CDC27 0.010 cell division cycle protein 27 isoform 2 LOC283685 0.010 PREDICTED: golgi autoantigen, golgin subfamily a-li... POLL 0.010 DNA-directed DNA polymerase lambda SMC1B 0.009 SMC1 structural maintenance of chromosomes 1-like 2 ...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
