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Search of human proteins with 169168928
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168928 PREDICTED: hypothetical protein [Homo sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168928 PREDICTED: hypothetical protein [Homo sapiens] 323 4e-89
gi|169168601 PREDICTED: hypothetical protein [Homo sapiens] 321 2e-88
gi|169169523 PREDICTED: hypothetical protein [Homo sapiens] 321 2e-88
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 32 0.28
gi|89027871 PREDICTED: hypothetical protein [Homo sapiens] 31 0.48
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 31 0.48
gi|113419909 PREDICTED: hypothetical protein [Homo sapiens] 30 0.63
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 0.63
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 0.63
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 0.63
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 0.63
gi|169204930 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|239750393 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|239744694 PREDICTED: hypothetical protein [Homo sapiens] 30 0.82
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 30 1.1
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 30 1.1
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 30 1.1
gi|239757367 PREDICTED: hypothetical protein [Homo sapiens] 29 1.4
gi|239751919 PREDICTED: hypothetical protein XP_002348040 [Homo ... 29 1.4
gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo ... 29 1.4
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 29 1.4
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 29 1.4
gi|211971097 hypothetical protein LOC441317 [Homo sapiens] 29 1.8
gi|110431336 zinc finger and SCAN domain containing 1 [Homo sapi... 29 1.8
gi|49472835 bridging integrator 2 [Homo sapiens] 29 1.8
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 28 2.4
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 28 2.4
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 28 2.4
gi|169173146 PREDICTED: hypothetical protein [Homo sapiens] 28 2.4
gi|89027843 PREDICTED: hypothetical protein LOC441328 [Homo sapi... 28 2.4
>gi|169168928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 323 bits (828), Expect = 4e-89
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE 60
MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE
Sbjct: 1 MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE 60
Query: 61 PKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS 120
PKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS
Sbjct: 61 PKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS 120
Query: 121 LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF 154
LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF
Sbjct: 121 LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF 154
>gi|169168601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 321 bits (822), Expect = 2e-88
Identities = 153/154 (99%), Positives = 153/154 (99%)
Query: 1 MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE 60
MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE
Sbjct: 1 MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE 60
Query: 61 PKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS 120
PKCLGSRERPVPFFSSL TSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS
Sbjct: 61 PKCLGSRERPVPFFSSLATSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS 120
Query: 121 LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF 154
LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF
Sbjct: 121 LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF 154
>gi|169169523 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 321 bits (822), Expect = 2e-88
Identities = 153/154 (99%), Positives = 153/154 (99%)
Query: 1 MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE 60
MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE
Sbjct: 1 MRVPRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPE 60
Query: 61 PKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS 120
PKCLGSRERPVPFFSSL TSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS
Sbjct: 61 PKCLGSRERPVPFFSSLATSSHFRLLTVPKQPPKTLRELGPGPEAENGRKKRSGRFIKLS 120
Query: 121 LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF 154
LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF
Sbjct: 121 LQILQYRHCLLSSLWMVCTHPCLQVFRKNAQELF 154
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 31.6 bits (70), Expect = 0.28
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 37 FLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERPVPFFSSLETSSHFRLLTVP-KQPPKT 95
F G+ + S + LC SP P R C+ S RP SL S ++ L+ P + P+
Sbjct: 806 FCGLSRDSSSMLLCSSPDRPPRCPLVCVLSPPRPSGSSPSLPASGSYQALSPPSRDSPEP 865
Query: 96 LREL 99
EL
Sbjct: 866 ASEL 869
>gi|89027871 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 30.8 bits (68), Expect = 0.48
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 20 EKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERP-VPFFSSLE 78
+K PA SL T LG+ N S G+ P P CL ++P + F E
Sbjct: 260 DKRPAVTSLPCPPAATHSLGLGSNLSFGP--GAKRPAQAPIQACLNFPKKPRLGPFQIPE 317
Query: 79 TSSHFRLLTVPK--QPPKTLRELGPGPEAENGRK 110
++ L P+ QPP ELGP + GR+
Sbjct: 318 SAIQGGELGAPENLQPPPAATELGPSTSPQMGRR 351
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.8 bits (68), Expect = 0.48
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 21 KGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERPVPFFSSLETS 80
K P P Q+ Q+ LG+ P + +P PPS P+ GS P
Sbjct: 2328 KAPLTPRASQVEPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPY--------- 2378
Query: 81 SHFRLLTVPKQPPKTLRELGPGPEA 105
QPP T R P PE+
Sbjct: 2379 ---------AQPPLTPRPQPPPPES 2394
>gi|113419909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 30.4 bits (67), Expect = 0.63
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 20 EKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERP-VPFFSSLE 78
+K PA S T LG+ N S S G+ P P CL ++P + F E
Sbjct: 260 DKRPAVTSQPCPSAATHSLGLGSNLSFGS--GAKRPAQAPIQACLNFPKKPRLGPFQIPE 317
Query: 79 TSSHFRLLTVPK--QPPKTLRELGPGPEAENGRK 110
++ L P+ QPP ELGP + GR+
Sbjct: 318 STIQGGELGAPENLQPPPAATELGPSRSPQMGRR 351
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 30.4 bits (67), Expect = 0.63
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 46 LISLCGSPGPPSRP-EPKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPE 104
+ISL GSPGPP P EP G P P + +P K + PGP
Sbjct: 1353 IISLPGSPGPPGTPGEPGMQGEPGPPGP-------PGNLGPCGPRGKPGKDGKPGTPGPA 1405
Query: 105 AENGRKKRSG 114
E G K G
Sbjct: 1406 GEKGNKGSKG 1415
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 30.4 bits (67), Expect = 0.63
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 46 LISLCGSPGPPSRP-EPKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPE 104
+ISL GSPGPP P EP G P P + +P K + PGP
Sbjct: 1353 IISLPGSPGPPGTPGEPGMQGEPGPPGP-------PGNLGPCGPRGKPGKDGKPGTPGPA 1405
Query: 105 AENGRKKRSG 114
E G K G
Sbjct: 1406 GEKGNKGSKG 1415
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 30.4 bits (67), Expect = 0.63
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 46 LISLCGSPGPPSRP-EPKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPE 104
+ISL GSPGPP P EP G P P + +P K + PGP
Sbjct: 1353 IISLPGSPGPPGTPGEPGMQGEPGPPGP-------PGNLGPCGPRGKPGKDGKPGTPGPA 1405
Query: 105 AENGRKKRSG 114
E G K G
Sbjct: 1406 GEKGNKGSKG 1415
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 30.4 bits (67), Expect = 0.63
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 46 LISLCGSPGPPSRP-EPKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPE 104
+ISL GSPGPP P EP G P P + +P K + PGP
Sbjct: 1353 IISLPGSPGPPGTPGEPGMQGEPGPPGP-------PGNLGPCGPRGKPGKDGKPGTPGPA 1405
Query: 105 AENGRKKRSG 114
E G K G
Sbjct: 1406 GEKGNKGSKG 1415
>gi|169204930 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 0.82
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 4 PRHPGGSHRSAVGLLCEKG-------PAAP-SLVQIR---CQTVFLGIHPNR--SLISLC 50
P P RS+ LL +KG P AP S +IR +T G P R S++ L
Sbjct: 38 PHTPATGTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLA 97
Query: 51 GSPGP-PSRPEPKCLGSRERPVP 72
G P RP P+ G R P P
Sbjct: 98 SPAGDLPRRPRPRAGGGRHSPRP 120
>gi|239750393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 0.82
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 4 PRHPGGSHRSAVGLLCEKG-------PAAP-SLVQIR---CQTVFLGIHPNR--SLISLC 50
P P RS+ LL +KG P AP S +IR +T G P R S++ L
Sbjct: 38 PHTPATGTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLA 97
Query: 51 GSPGP-PSRPEPKCLGSRERPVP 72
G P RP P+ G R P P
Sbjct: 98 SPAGDLPRRPRPRAGGGRHSPRP 120
>gi|239744694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 0.82
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 4 PRHPGGSHRSAVGLLCEKG-------PAAP-SLVQIR---CQTVFLGIHPNR--SLISLC 50
P P RS+ LL +KG P AP S +IR +T G P R S++ L
Sbjct: 38 PHTPATGTRSSYRLLPQKGRGNLRGAPTAPVSFSRIRRNPLRTQLSGSPPRRPTSVLRLA 97
Query: 51 GSPGP-PSRPEPKCLGSRERPVP 72
G P RP P+ G R P P
Sbjct: 98 SPAGDLPRRPRPRAGGGRHSPRP 120
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 29.6 bits (65), Expect = 1.1
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 41 HPNRSLISLCGSPGPPSRPEPKCLGSRERPVPFFS--SLETSSHFRLLTVPKQPPKTLRE 98
HP L L SP P S GSR P + +LE + L +P PP+ L +
Sbjct: 1232 HPPSDLAFLAPSPSPGSSG-----GSRGSAPPGETRHNLEREEYTVLADLP--PPRRLAQ 1284
Query: 99 LGPGPEAE---NGRKKRSGR 115
PGP+A+ GR GR
Sbjct: 1285 RQPGPQAQCSSGGRTHSPGR 1304
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 16 GLLCEK--GPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSR-PEPKCLGSRERPVP 72
G +CE PAAP++ R G + SL S GS G P+ P P C SR P+P
Sbjct: 29 GTVCETRTAPAAPTMASPR------GSGSSTSL-STVGSEGDPAPGPTPACSASRPEPLP 81
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 29.6 bits (65), Expect = 1.1
Identities = 26/81 (32%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 39 GIHPNRSLISLCGSPGPPSRPEPKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRE 98
G P L+ G PGPP P G E P +SL LL P PP L
Sbjct: 569 GQPPPEPLLPPPGGPGPPLAP-----GEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLA 623
Query: 99 -----LGPGPEAENGRKKRSG 114
L GP A +G G
Sbjct: 624 SFLPLLALGPTAGDGEGSAEG 644
>gi|239757367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 129 CLLSSLWMVCTHPCLQVFRKNAQEL 153
CLL++L ++C HP + R++AQEL
Sbjct: 40 CLLAALRVLCHHPGPDLIRQDAQEL 64
>gi|239751919 PREDICTED: hypothetical protein XP_002348040 [Homo
sapiens]
Length = 134
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 129 CLLSSLWMVCTHPCLQVFRKNAQEL 153
CLL++L ++C HP + R++AQEL
Sbjct: 40 CLLAALRVLCHHPGPDLIRQDAQEL 64
>gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo
sapiens]
Length = 134
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 129 CLLSSLWMVCTHPCLQVFRKNAQEL 153
CLL++L ++C HP + R++AQEL
Sbjct: 40 CLLAALRVLCHHPGPDLIRQDAQEL 64
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 29.3 bits (64), Expect = 1.4
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
Query: 49 LCGSPGPPSRPEPK----CLGSR----ERPVPFFSSLETSSHFRLLTVPKQPPKTLRELG 100
L G PGPP P PK G R E+ +P FS+ +SS L P PP G
Sbjct: 904 LSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPP------G 957
Query: 101 P-GPEAENG 108
P GP+ + G
Sbjct: 958 PQGPKGDKG 966
Score = 26.6 bits (57), Expect = 9.1
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 48 SLCGSPGPPSRPEPKCLGSRERPVPFFSSLETSSHFRLLTVPKQPPKTLRELGPGPEAEN 107
S+ G PGP P G P F S+ ET L+ P PP PGP+ +
Sbjct: 871 SIPGPPGPRGPPGEGLPGPPGPPGSFLSNSET-----FLSGPPGPPGP-----PGPKGDQ 920
Query: 108 G 108
G
Sbjct: 921 G 921
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 29.3 bits (64), Expect = 1.4
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 17/58 (29%)
Query: 4 PRHPGGSHRSAVGLLCEKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEP 61
P PG + SAVGL ++G R L L G PGPP P P
Sbjct: 1299 PGQPGPAGISAVGLKGDRGATG-----------------ERGLAGLPGQPGPPGHPGP 1339
Score = 26.6 bits (57), Expect = 9.1
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 50 CGSPGPP---SRP----EPKCLGSRERPVP 72
CG PGPP RP EP +G + RP P
Sbjct: 1260 CGKPGPPGSTGRPGAEGEPGAMGPQGRPGP 1289
>gi|211971097 hypothetical protein LOC441317 [Homo sapiens]
Length = 464
Score = 28.9 bits (63), Expect = 1.8
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 20 EKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERP-VPFFSSLE 78
+K PA S T LG+ N S G+ P P CL ++P + F E
Sbjct: 260 DKRPAVTSQPCPPAATHSLGLGSNLSFGP--GAKRPAQAPIQACLNFPKKPRLGPFQIPE 317
Query: 79 TSSHFRLLTVPK--QPPKTLRELGPGPEAENGRK 110
++ L P+ QPP ELGP + GR+
Sbjct: 318 SAIQGGELRAPENLQPPPAATELGPSTSPQMGRR 351
>gi|110431336 zinc finger and SCAN domain containing 1 [Homo
sapiens]
Length = 408
Score = 28.9 bits (63), Expect = 1.8
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 89 PKQPPKTLRELGPGPEAENGRKKRSGRFIKLSLQILQYRHCLLSSLWMVC 138
P+ P + ++ PGP + + + RF + + H L LW +C
Sbjct: 14 PQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHVASGPHLALGQLWTLC 63
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 28.9 bits (63), Expect = 1.8
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 10/108 (9%)
Query: 7 PGGSHRSAVGLLCEKGPAAPSLVQI--RCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCL 64
P + S G L G + S ++ R +T G + S+ + PPSRP P
Sbjct: 363 PSSTTPSPGGALSPSGQPSSSATEVVLRTRTASEGSEQPKKRASIQRTSAPPSRPPPPRA 422
Query: 65 GSRERPVP-FFSSLETSSHFRLLTVPK-------QPPKTLRELGPGPE 104
+ RP S T+S T P+ P+T E+ P PE
Sbjct: 423 TASPRPSSGNIPSSPTASGGGSPTSPRASLGTGTASPRTSLEVSPNPE 470
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 51 GSPGPPSRPEPKCLGSRERPVPFFSSLETSSH 82
G PGPP P P G +P+P SS +T H
Sbjct: 1540 GLPGPPGSPGPP--GEVIQPLPILSSKKTRRH 1569
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 51 GSPGPPSRPEPKCLGSRERPVPFFSSLETSSH 82
G PGPP P P G +P+P SS +T H
Sbjct: 1489 GLPGPPGSPGPP--GEVIQPLPILSSKKTRRH 1518
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 28.5 bits (62), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 51 GSPGPPSRPEPKCLGSRERPVPFFSSLETSSH 82
G PGPP P P G +P+P SS +T H
Sbjct: 1528 GLPGPPGSPGPP--GEVIQPLPILSSKKTRRH 1557
>gi|169173146 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 2.4
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 20 EKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERP-VPFFSSLE 78
+K PA S T LG+ N S G+ P P CL ++P + F E
Sbjct: 260 DKRPAVTSQPCPSAATHSLGLGSNLSFGP--GAKRPAQAPIQACLNFPKKPRLGPFQIPE 317
Query: 79 TSSHFRLLTVPK--QPPKTLRELGPGPEAENGRK 110
++ L P+ QPP ELGP + GR+
Sbjct: 318 STIQGGELGAPENLQPPPAATELGPSRSPQMGRR 351
>gi|89027843 PREDICTED: hypothetical protein LOC441328 [Homo
sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 2.4
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 20 EKGPAAPSLVQIRCQTVFLGIHPNRSLISLCGSPGPPSRPEPKCLGSRERP-VPFFSSLE 78
+K PA S T LG+ N S G+ P P CL ++P + F E
Sbjct: 260 DKRPAVTSQPCPPAATHSLGLGSNLSFGP--GAKRPAQAPIQACLNFPKKPRLGPFQIPE 317
Query: 79 TSSHFRLLTVPK--QPPKTLRELGPGPEAENGRK 110
++ L P+ QPP ELGP + GR+
Sbjct: 318 SAIQGGELGAPENLQPPPAATELGPSTSPQMGRR 351
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,331,433
Number of Sequences: 37866
Number of extensions: 466731
Number of successful extensions: 2030
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1893
Number of HSP's gapped (non-prelim): 237
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.