Guide to the Human Genome
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Name: LOC100131397 Sequence: fasta or formatted (162aa) NCBI GI: 169167589
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {162aa} PREDICTED: hypothetical protein
alt mRNA {162aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         23           2
 C cysteine            3.7          6           1
 D aspartate           1.9          3           2
 E glutamate           3.7          6           1
 F phenylalanine       1.9          3           1
 G glycine             9.9         16           2
 H histidine           2.5          4           1
 I isoleucine          1.9          3           1
 K lysine              4.3          7           1
 L leucine             8.0         13           1
 M methionine          1.2          2           1
 N asparagine          3.1          5           1
 P proline             9.3         15           1
 Q glutamine           4.9          8           1
 R arginine           10.5         17           3
 S serine             12.3         20           3
 T threonine           1.9          3           1
 V valine              3.7          6           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131397          1.000   PREDICTED: hypothetical protein 
LOC100131397          1.000   PREDICTED: hypothetical protein 
MEX3D                 0.033   ring finger and KH domain containing 1 
DGCR14                0.026   DiGeorge syndrome critical region protein 14 
MAML2                 0.026   mastermind-like 2 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
LOC100293604          0.026   PREDICTED: hypothetical protein 
FLJ22184              0.026   PREDICTED: hypothetical protein FLJ22184 
LOC100289721          0.026   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.026   PREDICTED: hypothetical protein XP_002343157 
SFRS16                0.026   splicing factor, arginine/serine-rich 16 
PI3                   0.023   elafin preproprotein 
LOC100291242          0.023   PREDICTED: hypothetical protein XP_002348020 
LOC100287950          0.023   PREDICTED: hypothetical protein XP_002343699 
NKD1                  0.023   naked cuticle homolog 1 
LOC100131165          0.023   PREDICTED: hypothetical protein 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
LOC100287171          0.020   PREDICTED: hypothetical protein XP_002342940 isofor...
LOC100287171          0.020   PREDICTED: hypothetical protein XP_002342939 isofor...
WASH1                 0.020   WAS protein family homolog 1 
TACC3                 0.020   transforming, acidic coiled-coil containing protein 3...
AIM1                  0.020   absent in melanoma 1 
MYLK3                 0.020   myosin light chain kinase 3 
MAST1                 0.020   microtubule associated serine/threonine kinase 1 [Ho...
TESK1                 0.020   testis-specific protein kinase 1 
OCA2                  0.016   oculocutaneous albinism II 
MARCKS                0.016   myristoylated alanine-rich protein kinase C substra...
B3GALT6               0.016   beta-1,3-galactosyltransferase 6 
MAGEB17               0.016   PREDICTED: melanoma antigen family B, 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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