Guide to the Human Genome
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Name: B3GALT6 Sequence: fasta or formatted (329aa) NCBI GI: 116268097
Description:

beta-1,3-galactosyltransferase 6

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.2         50           3
 C cysteine            2.1          7           2
 D aspartate           5.5         18           3
 E glutamate           6.1         20           2
 F phenylalanine       2.4          8           2
 G glycine             7.0         23           3
 H histidine           2.1          7           1
 I isoleucine          0.6          2           1
 K lysine              2.1          7           1
 L leucine            14.0         46           4
 M methionine          1.2          4           1
 N asparagine          0.6          2           1
 P proline             5.5         18           4
 Q glutamine           2.4          8           1
 R arginine           13.7         45           4
 S serine              5.2         17           1
 T threonine           2.1          7           1
 V valine              5.2         17           1
 W tryptophan          3.0         10           1
 Y tyrosine            4.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta-1,3-galactosyltransferase 6 
B3GALNT2              0.093   beta-1,3-N-acetylgalactosaminyltransferase 2 
B3GNT8                0.091   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GALT4               0.088   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4 [...
B3GNT7                0.085   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT3                0.080   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GALT5               0.074   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.074   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.074   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.074   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 ...
B3GALT5               0.074   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5 [...
B3GNT6                0.070   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
B3GALT2               0.068   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2 [...
B3GALT1               0.066   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GNT9                0.060   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltra...
B3GNT4                0.060   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GNT5                0.057   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...
B3GALNT1              0.049   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.049   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.049   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.049   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 ...
B3GALNT1              0.049   UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1 [...
B3GNT2                0.040   UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltrans...
LOC100289720          0.037   PREDICTED: hypothetical protein XP_002347139 
LOC100288842          0.037   PREDICTED: hypothetical protein XP_002342992 
INSM1                 0.014   insulinoma-associated 1 
LOC100290577          0.012   PREDICTED: hypothetical protein XP_002347620 
LOC100287438          0.012   PREDICTED: hypothetical protein XP_002343450 
DUSP8                 0.011   dual specificity phosphatase 8 
SNX26                 0.011   sorting nexin 26 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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