Guide to the Human Genome
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Name: FAM189B Sequence: fasta or formatted (668aa) NCBI GI: 38146116
Description:

hypothetical protein LOC10712 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {572aa} hypothetical protein LOC10712 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         45           3
 C cysteine            4.3         29           2
 D aspartate           3.9         26           1
 E glutamate           4.0         27           3
 F phenylalanine       2.8         19           2
 G glycine             7.8         52           3
 H histidine           2.1         14           1
 I isoleucine          2.5         17           2
 K lysine              1.9         13           1
 L leucine            12.4         83           3
 M methionine          1.3          9           2
 N asparagine          0.7          5           1
 P proline            11.5         77           4
 Q glutamine           2.2         15           2
 R arginine            8.2         55           3
 S serine             13.6         91           5
 T threonine           5.1         34           3
 V valine              6.0         40           2
 W tryptophan          1.0          7           1
 Y tyrosine            1.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC10712 isoform a 
FAM189B               0.748   hypothetical protein LOC10712 isoform b 
FAM189A1              0.176   hypothetical protein LOC23359 
FAM189A2              0.065   chromosome 9 open reading frame 61 
FAM189A2              0.065   chromosome 9 open reading frame 61 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
SAMD1                 0.015   sterile alpha motif domain containing 1 
KIAA1522              0.014   hypothetical protein LOC57648 
SRRM2                 0.014   splicing coactivator subunit SRm300 
NACA                  0.014   nascent polypeptide-associated complex alpha subuni...
CBLL1                 0.013   Cas-Br-M (murine) ecotropic retroviral transforming...
TNK2                  0.013   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.013   tyrosine kinase, non-receptor, 2 isoform 2 
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 3 ...
ADAMTS19              0.013   ADAM metallopeptidase with thrombospondin type 1 mo...
LOC388279             0.012   PREDICTED: hypothetical protein 
LMTK3                 0.012   lemur tyrosine kinase 3 
PRR12                 0.012   proline rich 12 
INPPL1                0.012   inositol polyphosphate phosphatase-like 1 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
ATN1                  0.011   atrophin-1 
ATN1                  0.011   atrophin-1 
SYN1                  0.011   synapsin I isoform Ia 
SYN1                  0.011   synapsin I isoform Ib 
LOC100292845          0.011   PREDICTED: hypothetical protein 
LOC100289230          0.011   PREDICTED: hypothetical protein XP_002342600 
MINK1                 0.011   misshapen/NIK-related kinase isoform 2 
SFRS15                0.011   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.011   splicing factor, arginine/serine-rich 15 isoform 1 [...
PRRT1                 0.011   NG5 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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