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Search of human proteins with 169166352
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169166352 PREDICTED: hypothetical protein [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169167231 PREDICTED: hypothetical protein [Homo sapiens] 296 3e-81
gi|169166924 PREDICTED: hypothetical protein [Homo sapiens] 296 3e-81
gi|169166352 PREDICTED: hypothetical protein [Homo sapiens] 296 3e-81
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 30 0.84
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 30 0.84
gi|31077092 neurogenin 2 [Homo sapiens] 29 1.1
gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo... 28 1.9
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 28 1.9
gi|239754614 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|239743215 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|4503923 gastrin preproprotein [Homo sapiens] 27 4.2
gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo ... 27 4.2
gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo ... 27 4.2
gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens] 27 5.5
gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo sapiens] 27 5.5
gi|156523262 hypothetical protein LOC112752 isoform 1 [Homo sapi... 27 5.5
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 26 9.3
gi|4503023 carnitine O-palmitoyltransferase precursor [Homo sapi... 26 9.3
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr... 26 9.3
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p... 26 9.3
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr... 26 9.3
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr... 26 9.3
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p... 26 9.3
gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3 pr... 26 9.3
gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1 pr... 26 9.3
gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2 p... 26 9.3
gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1 p... 26 9.3
gi|29789072 zinc finger, ZZ-type containing 3 [Homo sapiens] 26 9.3
>gi|169167231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 296 bits (759), Expect = 3e-81
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG 60
MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG
Sbjct: 1 MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG 60
Query: 61 WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK 120
WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK
Sbjct: 61 WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK 120
Query: 121 NQGRTEEIKQKRKNEFIEAL 140
NQGRTEEIKQKRKNEFIEAL
Sbjct: 121 NQGRTEEIKQKRKNEFIEAL 140
>gi|169166924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 296 bits (759), Expect = 3e-81
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG 60
MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG
Sbjct: 1 MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG 60
Query: 61 WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK 120
WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK
Sbjct: 61 WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK 120
Query: 121 NQGRTEEIKQKRKNEFIEAL 140
NQGRTEEIKQKRKNEFIEAL
Sbjct: 121 NQGRTEEIKQKRKNEFIEAL 140
>gi|169166352 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 296 bits (759), Expect = 3e-81
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG 60
MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG
Sbjct: 1 MSGRIIQVESPVLILIAIHSQPVLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLG 60
Query: 61 WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK 120
WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK
Sbjct: 61 WNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNK 120
Query: 121 NQGRTEEIKQKRKNEFIEAL 140
NQGRTEEIKQKRKNEFIEAL
Sbjct: 121 NQGRTEEIKQKRKNEFIEAL 140
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 29.6 bits (65), Expect = 0.84
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 76 GRAAGEDLEIWYR--QPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIKQKRK 133
GRAAGE+ + R P+V P P SR + P +N ++ E+K K +
Sbjct: 902 GRAAGEEAKQLARVPSPYVRTPVVESARPNSTSSREAEPRKGEPAYENPKKSSEVKVKEE 961
Query: 134 NE 135
+
Sbjct: 962 RK 963
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 29.6 bits (65), Expect = 0.84
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 76 GRAAGEDLEIWYR--QPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIKQKRK 133
GRAAGE+ + R P+V P P SR + P +N ++ E+K K +
Sbjct: 926 GRAAGEEAKQLARVPSPYVRTPVVESARPNSTSSREAEPRKGEPAYENPKKSSEVKVKEE 985
Query: 134 NE 135
+
Sbjct: 986 RK 987
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 29.3 bits (64), Expect = 1.1
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 47 SWVSTQAPDMDDLGWNLSPSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPG 106
S ++ AP + SP +C L + P AG D++ W P P +++ AP P
Sbjct: 215 SCTNSPAPSSSVSSNSTSPYSCTLSPASP---AGSDMDYWQPPP----PDKHRYAPHLPI 267
Query: 107 SR 108
+R
Sbjct: 268 AR 269
>gi|5032173 nuclear receptor subfamily 2, group F, member 1 [Homo
sapiens]
Length = 423
Score = 28.5 bits (62), Expect = 1.9
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 50 STQAPDMDDLGWNLS-PSACWLCDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSR 108
S + P D G N P+ G G AGE + Q PH PQ PG
Sbjct: 7 SWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQ----QAGSGAPH----TPQTPGQP 58
Query: 109 RSNPSPATAGNKNQG 123
+ +P TAG+K QG
Sbjct: 59 GAPATPGTAGDKGQG 73
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 28.5 bits (62), Expect = 1.9
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 73 SGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPA 115
SGPG A G+ EI + F YKL P +RRS P+ A
Sbjct: 10 SGPGAAMGDCAEI--KSQFRTREGFYKLLPGDGAARRSGPASA 50
>gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 490
Score = 28.1 bits (61), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 90 PFVCLPHRYKLAPQRPGSRRSNPS----PATAGNKNQGRTEEIKQKRKNE 135
P C P R + P P +R+ P P T G K +G+ E K+++K +
Sbjct: 346 PGNCSPER-RSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEK 394
>gi|239743215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 28.1 bits (61), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 90 PFVCLPHRYKLAPQRPGSRRSNPS----PATAGNKNQGRTEEIKQKRKNE 135
P C P R + P P +R+ P P T G K +G+ E K+++K +
Sbjct: 176 PGNCSPER-RSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEK 224
>gi|4503923 gastrin preproprotein [Homo sapiens]
Length = 101
Score = 27.3 bits (59), Expect = 4.2
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 72 DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113
D+ G A DLE+ W Q HR +L PQ P ++PS
Sbjct: 31 DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73
>gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo
sapiens]
Length = 297
Score = 27.3 bits (59), Expect = 4.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 88 RQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEE-IKQKRKN 134
+ P +C+P R PQ+PGS S P P + Q E I+ +RKN
Sbjct: 3 KTPTLCIPDRQHQLPQQPGS--SPPDP-----EEQRELEPLIRTRRKN 43
>gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo
sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 4.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 88 RQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEE-IKQKRKN 134
+ P +C+P R PQ+PGS S P P + Q E I+ +RKN
Sbjct: 193 KTPTLCIPDRQHQLPQQPGS--SPPDP-----EEQRELEPLIRTRRKN 233
>gi|25014103 interleukin 28 receptor, alpha isoform 1 [Homo sapiens]
Length = 520
Score = 26.9 bits (58), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 47 SWVSTQAPDMDDLGWNLSPSACWLCDSGPGRAAGED 82
SW ST D W+ + S+ +L + GPG+ G D
Sbjct: 389 SWASTV-----DSSWDRAGSSGYLAEKGPGQGPGGD 419
>gi|28416909 interleukin 28 receptor, alpha isoform 2 [Homo sapiens]
Length = 491
Score = 26.9 bits (58), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 47 SWVSTQAPDMDDLGWNLSPSACWLCDSGPGRAAGED 82
SW ST D W+ + S+ +L + GPG+ G D
Sbjct: 360 SWASTV-----DSSWDRAGSSGYLAEKGPGQGPGGD 390
>gi|156523262 hypothetical protein LOC112752 isoform 1 [Homo
sapiens]
Length = 213
Score = 26.9 bits (58), Expect = 5.5
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 24 LGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDL 59
L +CYH+T HR + LE + + PD++++
Sbjct: 83 LNACYHKTHHRDLGLASLEEADIPII----PDLEEV 114
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 26.2 bits (56), Expect = 9.3
Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 94 LPHRYKLAPQRPGSRRSNPSPATAGNKNQG 123
+PH +P PGS+ + PSP+++ ++++G
Sbjct: 200 VPHN---SPSPPGSKSATPSPSSSVHEDEG 226
>gi|4503023 carnitine O-palmitoyltransferase precursor [Homo
sapiens]
Length = 658
Score = 26.2 bits (56), Expect = 9.3
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 23 VLGSCYHQTEHRQICFPQLESQIVSWVSTQAPDMDDLGWNLSPSACWLCDSGPGRAAGED 82
++ + ++Q ++ P+LE I ++S Q P ++D + + C ++G G+ E
Sbjct: 39 IVPTMHYQDSLPRLPIPKLEDTIRRYLSAQKPLLNDGQFRKTEQFCKSFENGIGKELHEQ 98
Query: 83 L 83
L
Sbjct: 99 L 99
>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
precursor [Homo sapiens]
Length = 171
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
precursor [Homo sapiens]
Length = 171
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
precursor [Homo sapiens]
Length = 213
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
precursor [Homo sapiens]
Length = 206
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
precursor [Homo sapiens]
Length = 224
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3
precursor [Homo sapiens]
Length = 229
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1
precursor [Homo sapiens]
Length = 252
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2
precursor [Homo sapiens]
Length = 208
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1
precursor [Homo sapiens]
Length = 247
Score = 26.2 bits (56), Expect = 9.3
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 71 CDSGPGRAAGEDLEIWYRQPFVCLPHRYKLAPQRPGSRRSNPSPATAGNKNQGRTEEIK 129
C PG+ A WYR PF + H Y+ + G + + +GRTE +K
Sbjct: 53 CRISPGKNATGMEVGWYRPPFSRVVHLYRNGKDQDGDQ---------APEYRGRTELLK 102
>gi|29789072 zinc finger, ZZ-type containing 3 [Homo sapiens]
Length = 903
Score = 26.2 bits (56), Expect = 9.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 104 RPGSRRSNPSPATAGNKNQGRTEEIKQKRKNE 135
R +R P P GN N GRT ++KQ+ E
Sbjct: 48 RSPKKRPEPVPIQKGN-NNGRTTDLKQQSTRE 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,794,627
Number of Sequences: 37866
Number of extensions: 348621
Number of successful extensions: 997
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 28
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.